ref #7597 Use remote progress monitor for taxon aggregation

ref #7597 Fix multi rep exception

ref #7597 Extend compare wrapper to support all statistical measures

ref #7597 Set taxon as cdm entity of update result

ref #7597 Implement taxon description aggregation

ref #7611 implementing typeDesignation media service and MediaDTO

fixing wrong usage of findByTitle* Method with IIdentifiableEntityServiceConfigurator

fixing wrong usage of findByTitle* Method with IIdentifiableEntityServiceConfigurator

comment regarding #7608 in DerivedUnitFacadeCacheStrategy

ref #7608 string representations for media types implemented

cleanup

fix #7607 TypeDesignationSetManager: types without enclosing brackets

ref #7597 Refactor aggregation method + add taxon aggregation method

ref #7597 Refactor aggregation method

ref #7509 Add "computed" flag to description

ref #7589 Improve description search when adding specimens to the matrix

ref #7589 Delete taxon node from descriptive data set

Fix possible NoSuchElementException

minor

move getFieldUnits to findFieldUnits

Remove description from DescriptiveDataSet during deletion

ref #7573 adding AGTENTBASE to CdmPermissionClass and creating generic RoleProber

fix #7542: first remove synoným then add it to new accepted taxon to avoid orphan synonyms

Add service method to find a description for a dataset

ref #7561 removing associated name and protologue from OccurrencePortalController and FieldUnitDTO

ref #7550 pluggable Role tests for the UserHelper

ref #7348 implementing find service for registrations with user, typeDesignationStatus, registrationStatus, identifier and taxonname filters

ref #7348 typeDesignations as non bean property to supress it for RegistrationDTO serializations

ref #7348 TypeDesignationSetManager provides TaggedText representation

ref #7552 adding TypedEntityReference data to TaggedText

fix #6967 implementing registration/identifier endpoints for domain entity and DTO api

ref #7527 adding missing @Transactional to new service methods

ref #7550 relaxing bean dependencies for tests without security context

ref #7550 adding CdmUserHelper and interfaces in cdmlib (commit also contains a new conroller helper method)

Specify return value for data value

fix #7527 making page by parameter with criteria and restrictions available in the service layer

ref #7546 RegistrationIdentifierMinter can check for matching identifiers

ref #7509 aggregate quant. and categorical data (simple concatenation)

ref #7509 Adapt aggregation method parameter list

ref #7509 Generalize method parameter to List

Merge branch 'develop' into aggregation

Conflicts:¶

cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java¶

ref #7533 RegistrationService with typeStatus filter

ref #7528 ref #6655 introducing RegistrationStatusTransitions to provide a matrix of allowed RegistrationStatus transitions

removing unnecessary casts

java doc and formatting

cleanup

ref #7530 3 families and dianthus import (WFO Access Import)

cleanup

ref #7525 restoring all previously removed Criteria methods

fix #7525 replacing Criteria lists by cdm Restrictions in CdmEntityDaoBase.*ByTitle() methods

cleanup

ref #7509 Implement service method for common parent taxon node + test

remove deprecated method TaxonService.getAllMedia

ref #7509 Add service method for common parent taxon node

exception handling for classification filter in getAcceptedTaxonFor

fix NPE in IdentifiableServiceBase.getTitleSearchStringSqlized

cleanup

ref #3560 fix checkPublished in service base class

cleanup

ref #7439 SQLize title search for occurrences

cleanup

ref #3560 unpublished exception handling for TaxonController.doGetAcceptedFor

ref #7463:add subtask for saving and reindexing in moveTaxonNodes

cleanup

cleanup

cleanup

cleanup

cleanup

remove harmonization candidates in TaxonDao and NameService

cleanup

cleanup

smaller changes for longrunning tasks and progress monitor

cancel the longrunning thread cancels moveTaxonNode and set it to rollbackOnly

check in done() in remotingProgressMonitor whether result is already set

cleanup

progressmonitor should be set to done by progressMonitorThread not in service methods

fix problems with progress monitor

revert changes in cleanupThread of progressMOnitorManager

remove monitorThread from monitor and handle it in progressMonitorManager

ref #7463: do not move children of a moved node to the new parent but keep it as children

ref #7463: add only moved nodes to resultSet of moveTaxonNodes

ref #7487 fix ticket number 7486->7487

ref #7486 create test for pro parte search issue

rel #7478 implement pro parte synonym search in free text taxon and name search

cleanup

fix #7486 fix taxon full text search if doTaxon is missing

cleanup

Adjust specimen type designation display

ref #3560 fix includeUnpublished for taxon relationships and correct includePublished->includeUnpublished

use long instead of int (cont.)

use long instead of int (cont.)

use long instead of int (cont.)

use long instead of int in some of the count methods, use base methods for pageSize/number and order for criteria and queries, cleanup

minor

ref #3560 add includeUnpublished for taxon relationships

cleanup and remove rows(xxx) method

fix #7467 taxon name parts lookup method with support for wildcard searches, TaxonNameParts and filter

updating deprecation information on methods using int for hibernare result count which is now long

ref #3560 further improve full text taxonAndName search for publish flag, including tests

potentially fix uuid query factory method