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From 10/15/2020 to 11/13/2020

11/13/2020

06:10 PM feature request #9301 (Closed): SpecimenTypeDesignationEditor: Add fields for citation and citationDetail
for all TypeDesignations where `typeStatus.hasDesignationSource() == true` field for citation and citationDetail need... Andreas Kohlbecker
05:41 PM feature request #8308 (Feedback): Extend specimen type designation editor
I can't see that there is anything missing:
type status:
![](picture825-1.png)
image references representi...
Andreas Kohlbecker
04:36 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
the Excel file belongs to the other ticket - cleaning up here .... Andreas Kohlbecker
04:35 PM bug #9290: stop setting Registration.citation as citation for TypeDesignations in all type editors by default
Update to the Excel file.
Now the reference type is also shown.
"Irregular" Reference Types are highlighted.
Andreas Kohlbecker
03:13 PM task #9300 (Feedback): Name Page: harmonize media specimen lectotype representations
Since the Citation part will end with a dot character, is seems incorrect to write "designated by", it better should ... Andreas Kohlbecker
03:10 PM task #9300 (In Progress): Name Page: harmonize media specimen lectotype representations
The name *Heterocapsa triquetra* f. *apiculata* Er.Lindem. has a media specimen as lectotype.
* The "designated ...
Andreas Kohlbecker
01:41 PM Revision d8d71f2a (taxeditor): ref #9266: minor
Katja Luther
01:39 PM Revision 0faab9c0 (taxeditor): fix #6947: fix error for empty lsid field
Katja Luther
01:39 PM bug #6947 (Resolved): Incorrect error for LSID field
Applied in changeset commit:taxeditor|0faab9c0c0eae654583982c6f067e89851f758ee. Katja Luther
11:09 AM feature request #9299 (Closed): Add LSID to author and reference details
Katja Luther
11:04 AM feature request #9298 (New): Preference for IDinSource, IdNamespace and original information in nomenclatural reference details view
IDInSource and IDNamespace are not needed for nomenclatural source therefore the display should be handled by a prefe... Katja Luther
10:42 AM feature request #9297 (Closed): Improve name of zip file for cdmLightExport
The zip file created by the cdmLight export should contain more informations about the data.
For example:
{TaxonN...
Katja Luther
10:39 AM Revision 316f9d85 (taxeditor): fix wrong background after changing rank in nameDetailElement
Katja Luther
10:11 AM feature request #9296 (New): Preference to show/not show infrageneric epithet for species
ERS:
Eingabe eines name in source: im Formular „New Scientific Name“ gibt es einen bug: das scroll-down-Menü für „Ra...
Katja Luther
10:09 AM feature request #9295 (New): Preference to set default reference type for new references
ERS:
Bei der Eingabe einer neuen Referenz steht der „Reference Type“ standardmäßig auf „Generic“. Der häufigste Fall...
Katja Luther
10:07 AM feature request #9294 (New): New person dialog with protected titleCache
ERS:
Wenn ich im Laufe der Eingabe einer neuen Referenz einen neuen Autor eingeben muss, öffnet sich im Dialogfeld „...
Katja Luther
09:06 AM feature request #9262 (In Progress): Several open issues for cdmlight export related to Cactaceae and other Caryophallales
Katja Luther
08:58 AM feature request #7700 (Closed): use TypeDesignationSetManager for creating typedesignation string in cdmlightExport
I think we can close this ticket as there is kind of a follow up ticket with #9279 Andreas Müller
08:22 AM Revision bdd421bd (taxeditor): fix empty datasource view
Katja Luther

11/12/2020

05:52 PM Revision 398413cc (cdmlib): ref #9253 removing initstrategy from DTO service method - cleaning up
Andreas Kohlbecker
04:44 PM Revision ba48bce0 (cdmlib): ref #9253 removing initstrategy from DTO service method
Andreas Kohlbecker
04:02 PM bug #9289 (Closed): LazyInitializationException (LIE) in NameTypeDesignationEditor
no more problems Andreas Kohlbecker
03:23 PM bug #9289: LazyInitializationException (LIE) in NameTypeDesignationEditor
fixed by commit:cdm-vaadin|84760d27
Andreas Kohlbecker
03:54 PM bug #9238 (Closed): pure entities in DerivateDTO.derivates may cause LIEs
Andreas Kohlbecker
03:52 PM task #9252 (Closed): Harmonize SpecimenOrOberservationBase related DTOs
this ticket is either completed or open tasks are copied to new tickets, so it can be closed Andreas Kohlbecker
03:50 PM task #9293 (New): Use use DTO for Set<IdentifiableSource> sources in SpecimenOrObservationBaseDTO
copied from #9252 Andreas Kohlbecker
03:21 PM Revision 84760d27 (cdm-vaadin): ref #6581 adapting init strategy to new original source handling
Andreas Kohlbecker
11:39 AM Revision 68e7703e (taxeditor): ref #9266: restructure nomenclatural source detail element
Katja Luther
11:04 AM Revision 468ead78 (taxeditor): ref #9266: restructure nomenclatural source detail element
Katja Luther

11/11/2020

03:36 PM Revision 9270c708 (cdmlib): ref #9262: add homotypic group sortindex
Katja Luther
12:28 PM feature request #9292 (New): find by name parts search implemented
Implement a search similar to the `TaxonListController.doFindByNamePart()` function which allows for filtering names ... Andreas Kohlbecker
11:41 AM Revision 8f36abc7 (taxeditor): ref #9199: fix problems with nomenclatural reference details
Katja Luther
11:34 AM bug #8592: consider renaming menu entry General->Switch User
Currently it is not wanted that users connect to another db as this does not work correctly due to static term proble... Andreas Müller
08:59 AM discussion #7917: Revise ReferenceSystemTerms
Do you really think that a measurement method is the same as the mathematical model that is needed to make sense of t... Andreas Kohlbecker
08:29 AM Revision adf08111 (cdmlib): ref #8774: save term tree informations
Katja Luther
08:24 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Katja Luther wrote:
> > ...
> > This is caused by dirty data, I cleaned up the database, n...
Katja Luther

11/10/2020

05:53 PM discussion #7917: Revise ReferenceSystemTerms
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> > > So you are planning to use the r...
Andreas Kohlbecker
05:51 PM discussion #7917: Revise ReferenceSystemTerms
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > So you are planning to use the reference system for computati...
Andreas Müller
11:07 AM discussion #7917: Revise ReferenceSystemTerms
Andreas Müller wrote:
> So you are planning to use the reference system for computations in the near future?
Plac...
Andreas Kohlbecker
09:44 AM discussion #7917: Revise ReferenceSystemTerms
So you are planning to use the reference system for computations in the near future? Andreas Müller
08:52 AM discussion #7917: Revise ReferenceSystemTerms
BTW: the CRS for GPS is WGS 84
For solving the the current misconception in the model we need to distinguish the *...
Andreas Kohlbecker
05:04 PM task #9291 (Closed): Clear all unnecesary TypeDesignation.citation entities and citationDetails
**This ticket should be solved after #9290 is being released and deployed to phycobank**
This is the query to whic...
Andreas Kohlbecker
04:59 PM bug #9290 (Closed): stop setting Registration.citation as citation for TypeDesignations in all type editors by default
As shown in the analysis ( attachment:"TaxonName and Typedesignation citations unequal_diff.xlsx" ) using the `Regist... Andreas Kohlbecker
02:48 PM Revision 2749233a (taxeditor): move menu item
Katja Luther
02:42 PM Revision e2669604 (taxeditor): show menu items only once
Katja Luther
12:19 PM bug #9286 (Resolved): Re-connect and change user should be disabled if no datasource is connected yet
Applied in changeset commit:taxeditor|cea74dc3dd7328308f0fda121d2ccc5b7246c9a8. Katja Luther
12:17 PM Revision 5affe60a (taxeditor): ref #8774: do not allow duplicates in character editor
Katja Luther
11:51 AM Revision e4a5c66f (taxeditor): ref #8774: do not allow duplicates in term tree editors if voc does not allow
Katja Luther
11:34 AM bug #9289 (Closed): LazyInitializationException (LIE) in NameTypeDesignationEditor
Buryatia belyaevae Kulikovskiy, Metzeltin & Lange-Bert. name type for Buryatia belyaevae Kulikovskiy, Metzeltin & Lan... Andreas Kohlbecker
09:43 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Katja Luther wrote:
> ...
> This is caused by dirty data, I cleaned up the database, now the feature trees and the ...
Andreas Müller
09:21 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> adding a child (which was a duplicate but the tree did not allow duplicates, don't know if t...
Katja Luther
09:12 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an...
Katja Luther

11/09/2020

03:44 PM Revision 59a68768 (cdmlib): fix syntax exception
Katja Luther
03:39 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Unordered trees should preferably be ordered alphabetically by label or idInVoc or whatever the first part of the use... Andreas Müller
03:29 PM bug #8774: Reimplement term tree editors to implement the general save strategy
When adding/removing terms the tree should stay expanded. Currently it collapses and you have to reopen it. Best woul... Andreas Müller
03:27 PM bug #8774: Reimplement term tree editors to implement the general save strategy
~~The duplicate check should be done when adding the term not only when saving it.~~
this is fixed.
Andreas Müller
03:22 PM bug #8774: Reimplement term tree editors to implement the general save strategy
adding a child (which was a duplicate but the tree did not allow duplicates, don't know if this is relevant):
~~~
...
Andreas Müller
03:13 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Changing the name of a vocabulary is not possible. The changes neither show up in the term t...
Andreas Müller
03:12 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Changing the name of a vocabulary is not possible. The changes neither show up in the term t...
Andreas Müller
03:11 PM bug #8774: Reimplement term tree editors to implement the general save strategy
~~Changing the name of a vocabulary is not possible. The changes neither show up in the term tree editor nor do they ... Andreas Müller
02:52 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an...
Katja Luther
02:49 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Can we show the details of a term anyway even if it is not editable in the term tree editor....
Katja Luther
02:44 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Can we show the details of a term anyway even if it is not editable in the term tree editor. This is because the pure... Andreas Müller
02:34 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Can we still Change the menu that way that we have Vocabularies instead of "Feature", "Named Area", "Others" and then... Andreas Müller
02:31 PM bug #8774: Reimplement term tree editors to implement the general save strategy
It is now possible to open 2 term tree Editors of the same type. This is not wanted as a term tree editor always edit... Andreas Müller
02:28 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
Trying to open the feature tree editor opened it in the buttom panel and no tree appeared and no conext menu existed ... Andreas Müller
02:25 PM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Drag&drop still seems to work like in the old version with no dirty flag but immediate save ...
Andreas Müller
02:07 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
~~Drag&drop still seems to work like in the old version with no dirty flag but immediate save of change.~~ Andreas Müller
03:16 PM feature request #9288 (Closed): Add symbols for flags in use for term trees in term tree editor
The flags are "allow duplicates", "order relevant" and "is flat".
As long as we do not have better symbols we coul...
Andreas Müller
02:49 PM feature request #9287 (Closed): Show term details in details view of term tree editor
From ticket #8774:
Can we show the details of a term anyway even if it is not editable in the term tree editor. Th...
Katja Luther
02:42 PM Revision cea74dc3 (taxeditor): fix #9286: add core expression to reconnect menu item
Katja Luther
02:12 PM bug #9286 (Closed): Re-connect and change user should be disabled if no datasource is connected yet
Currently choosing the re-connect leads to a NPE Andreas Müller
02:06 PM discussion #7917: Revise ReferenceSystemTerms
I remember the outcome differently.
> conglomerate of different types of possibilities to define what has been use...
Andreas Kohlbecker
01:33 PM discussion #7917: Revise ReferenceSystemTerms
We had discussed this issue some years ago and as far as I remember the result was, that the term ReferenceSystem mig... Andreas Müller
01:44 PM feature request #8402: ordering typedesignations in name and taxon page
follow up tasks are copied to #9283, #9284, #9285 Andreas Kohlbecker
01:43 PM task #9285 (New): apply the order of the chosen TermTrees to the typedesignations in name and taxon page
This should preferably implemented by adding a query parameter to the webservice delivering the typedesignations.
...
Andreas Kohlbecker
01:40 PM feature request #9284 (New): Admin UI to define the TermTrees as sort order preset
this is required at least for the order of typedesignations in name and taxon page, see #8402 Andreas Kohlbecker
01:37 PM task #9283 (New): Webservice for TermTrees implemented
this webservice may be similar to the vocabulary web service.
It is important that the order of terms is retained
Andreas Kohlbecker
01:23 PM bug #9215 (Closed): Drop down for empty rank does not work
This seems to be fully fixed. Andreas Müller
01:15 PM task #9266 (Feedback): Remove protologue section from TaxEditor
The protologue section should also be removed from local and DB preferences I guess as it probably has no effect to u... Andreas Müller

11/06/2020

10:03 PM Revision 361c1e1d (cdmlib): cleanup and javadoc
Andreas Müller
05:20 PM Revision 071a56e6 (cdm-dataportal): ref #8402 ref #9279 adapting sort order to latest changes in TypeDesignationSetManager - commenting
Andreas Kohlbecker
05:15 PM Revision 22354fa0 (cdm-dataportal): ref #8402 ref #9279 adapting sort order to latest changes in TypeDesignationSetManager
Andreas Kohlbecker
05:13 PM feature request #8402: ordering typedesignations in name and taxon page
The sort order should follow the order of the type designation status terms either of that in the vocabulary or in a ... Andreas Kohlbecker
05:12 PM task #9266 (Resolved): Remove protologue section from TaxEditor
The protologue section is removed/commented, please review afterwards I will remove the code completely. Katja Luther
05:09 PM Revision 8d385449 (taxeditor): rename/structure language preferences - admin prefs
Katja Luther
05:06 PM Revision 8ec0ee52 (taxeditor): rename/structure language preferences
Katja Luther
05:04 PM Revision 85ff485a (taxeditor): ref #9266: remove protologue section - needs to be cleaned up
Katja Luther
03:59 PM feature request #9282 (Closed): Add nomenclatural standing
According to #9272 there are 4 classes of nomenclatural standing. These should be stored together with the accordings... Andreas Müller
01:41 PM Revision b6099a9c (cdmlib): ref #8774: missing files
Katja Luther
01:26 PM Revision 9ad46d6b (cdmlib): ref #9252 piping baseofRecord through KeyTermValueProcessor
Andreas Kohlbecker
01:24 PM Revision d5d943cb (cdm-dataportal): ref #9252 adapting portal to latest DTO changes
Andreas Kohlbecker
01:22 PM feature request #9272: Add missing nomenclatural status
The situation has changed. Later isonym already exists as name relationship, not as status. At the same time there ar... Andreas Müller
01:06 PM feature request #9279: Improve type designation formatting and TypeDesignationSetManager
An example for unparsed specimen from Cactaceae: Selenicereus anthonyanus (Alexander) D.R.Hunt
Resulting in:
 –...
Andreas Müller
12:16 PM feature request #9279 (In Progress): Improve type designation formatting and TypeDesignationSetManager
Andreas Müller
12:05 PM bug #9281 (Closed): Set basionym not available for heterotypic synonyms after drag & drop
mail ERS:
beim Zusammenstellen von Synonymen in einer homotypischen Gruppe im Freitext-Editor ist es anschließend ...
Katja Luther
11:19 AM Revision b8a1c0fe (taxeditor): fix i18n
Katja Luther
10:46 AM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
all termtree editors are now switched to dtos. please review. Katja Luther
10:45 AM Revision a5c3b1fd (taxeditor): ref #8774: fix character creation
Katja Luther
10:44 AM Revision 2cb9b55f (cdmlib): ref #8774: fix getPath of termnode
Katja Luther

11/05/2020

05:18 PM task #9280 (Closed): Refactor: IKeyTerm.getMessage() --> IKeyTerm.getLabel()
The property name IKeyTerm.message is misleading and confusing it should be renamed to label
----
From email co...
Andreas Kohlbecker
04:04 PM report #8177 (Worksforme): Discuss: How to add originals of a type specimen
We concluded that adding of intermediate originals to a specimen is a special case for phycobank. This usecase in not... Andreas Kohlbecker
03:04 PM Revision c3e91e82 (taxeditor): add local to application MANIFEST
Katja Luther
02:58 PM Revision cee85ae0 (taxeditor): ref #9154: fix fragment.e4xmi
Katja Luther
02:21 PM Revision 1f3831c5 (cdmlib): cleanup
Andreas Müller
02:21 PM Revision ab1f58a9 (cdmlib): ref #9279 improve TypeDesignationSetManager
Andreas Müller
02:08 PM feature request #9279 (Closed): Improve type designation formatting and TypeDesignationSetManager
these are open issues from #7700 and general issues
Some issues are
* parameterize formatting (with citation, w...
Andreas Müller
12:50 PM Revision df35ccb3 (cdmlib): remove unused method in depracted FeatureNodeService
Katja Luther
11:55 AM Revision de68e009 (cdmlib): ref #8774: avoid NPE in delete method
Katja Luther
11:18 AM Revision f00aae44 (cdmlib): ref #8774: improve save method for new characternodes
Katja Luther
09:58 AM feature request #9277: User rights for name, name type, and specimen type notes
Submitters and curator(s) should have the same rights to create notes.
except for the status of the registrations:...
Wolf-Henning Kusber
09:23 AM feature request #9277 (New): User rights for name, name type, and specimen type notes
Submitters and curator(s) should have the same rights to create notes.
Name editor:
Technical (currently enabled ...
Wolf-Henning Kusber
09:47 AM feature request #9278 (New): Notes for references
Currently the curator has the option to fill
Editorial notes (for publication; not implemented yet)
Technical notes...
Wolf-Henning Kusber
09:32 AM Revision 8bf5dd93 (taxeditor): ref #8774: fix save of newly created character nodes
Katja Luther
09:29 AM Revision 25b3a146 (cdmlib): ref #8774: save method for new characternodes
Katja Luther

11/04/2020

04:20 PM Revision 6043d78e (cdm-dataportal): ref #9262 adapting dataportal to lowercase typedesignation status
Andreas Kohlbecker
03:16 PM Revision 002cdd32 (cdmlib): ref #9252 renaming property derivates to derivatives
Andreas Kohlbecker
03:16 PM Revision 0ff8cbcf (cdm-dataportal): ref #9252 renaming property derivates to derivatives - adapting dataportal
Andreas Kohlbecker
03:15 PM Revision 8b35bc36 (cdmlib): reference search for abbrevTitleCache and titleCache
Katja Luther
03:15 PM Revision 5a8468de (cdmlib): ref #9262: smaller changes
Katja Luther
03:09 PM Revision f51e4e4e (cdm-dataportal): ref #9252 removing deprecated property listLabel - adapting dataportal
Andreas Kohlbecker
03:09 PM Revision 03b91810 (cdmlib): ref #9252 removing deprecated property listLabel
Andreas Kohlbecker
03:04 PM Revision 8a605860 (cdm-dataportal): ref #9252 using IEnumTerm for recordBase - adapting dataportal
Andreas Kohlbecker
12:42 PM Revision 25dfcf2f (cdmlib): ref #9252 using IEnumTerm for recordBase
Andreas Kohlbecker
12:42 PM Revision 54b7f04e (cdmlib): ref #9252 documenting further needed refactoring
Andreas Kohlbecker
12:34 PM task #9252: Harmonize SpecimenOrOberservationBase related DTOs
tasks regarding DerivateDataDTO copied to other ticket Andreas Kohlbecker
12:31 PM task #9276 (New): improve DerivateDataDTO
copied from #9252
DerivateDataDTO needs harmonization:
* find better class name
* Use `List<MediaDTO>` instead...
Andreas Kohlbecker
12:08 PM task #9268: Check cdm for GC G1 humongous objects problem
Andreas Kohlbecker wrote:
> this finding can be especially relevant for imports and exports, therefore we should exa...
Katja Luther
12:00 PM task #9268 (Feedback): Check cdm for GC G1 humongous objects problem
this finding can be especially relevant for imports and exports, therefore we should examine I/O functionalities whic... Andreas Kohlbecker
11:29 AM task #9268: Check cdm for GC G1 humongous objects problem
further results from the test server after startup and running the Data Portal Cacher for E+M by 8,5% (attachment:g1-... Andreas Kohlbecker
10:47 AM task #9275 (New): Cleanup apache configuration from "AllowEncodedSlashes On"
see #7563 for servers which need to be cleaned Andreas Kohlbecker
10:42 AM bug #9240 (Closed): nomenclatural status missing in name and registration page
Andreas Kohlbecker

11/03/2020

09:27 PM Revision c2139d5c (cdmlib): cleanup
Andreas Müller
06:30 PM task #9268 (In Progress): Check cdm for GC G1 humongous objects problem
Andreas Kohlbecker
06:30 PM task #9268: Check cdm for GC G1 humongous objects problem
I enabled G1 GC logging as described in https://plumbr.io/handbook/gc-tuning-in-practice/other-examples/humongous-all... Andreas Kohlbecker
05:45 PM feature request #9134: Rule based creation of additional media representations "on the fly"
I improved the regex in the DefaultMediaTransformations for digilib, this is the new default:
~~~json
[ {
"sch...
Andreas Kohlbecker
05:42 PM Revision 41ed639d (cdmlib): ref #9134 improving regex in DefaultMediaTransformations for digilib
Andreas Kohlbecker
04:25 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
Thumbnails have been removed from cyprus DB (also from AUD tables).
So the only open issue is now to update links ...
Andreas Müller
01:59 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
Removing thumbnails:
~~~sql
SELECT *
FROM MediaRepresentation mr
INNER JOIN MediaRepresentationPart mrp ON mrp....
Andreas Müller
02:02 PM feature request #9274 (New): Analyze where recalculating of taxon navigator is really necessary
mail AM:
Wenn der Navigator verlinkt ist, wird sehr viel Zeit damit verbracht, den Navigator nach vielen Aktionen ...
Katja Luther
12:24 PM feature request #9273 (New): [DISCUSS] Unify Nomenclatural status and name relationships
Often these 2 represent the same. The unified class would be a relation which is either unary or binary.
Andreas Müller
11:48 AM bug #8751 (Rejected): Replace saveOrUpdate() in AbstractTermTreeEditor
Katja Luther
11:46 AM bug #8751 (Resolved): Replace saveOrUpdate() in AbstractTermTreeEditor
This is fixed by using dtos for the termtree editors. See #8774.
Maybe we should set the status to rejected becaus...
Katja Luther
11:42 AM Revision 2931e154 (cdmlib): ref #8774: reuse treeDto for all node dtos
Katja Luther
11:36 AM Revision 458132f7 (taxeditor): ref #8774: fix refresh after remove featurenode
Katja Luther
11:07 AM feature request #9272: Add missing nomenclatural status
We still need (Latin) abbreviations for these two status types. Andreas Müller
11:05 AM feature request #9272 (Closed): Add missing nomenclatural status
From the EDIT manual for nomenclatural status and name relationships.
Designations
* invalid names
* invali...
Andreas Müller
10:24 AM Revision 5790f731 (taxeditor): ref #8774: fix drag & drop in character editor
Katja Luther

11/02/2020

09:37 PM feature request #9271 (In Progress): Improve E+M dataportal performance
To fully release the E+M data portal which should try to improve the peformance to the performance difference between... Andreas Müller
09:20 PM Revision d772a673 (cdmlib): ref #6589 adapt cdmlight export to new protologue handling
Andreas Müller
09:19 PM Revision e0d5e5a8 (cdmlib): cleanup
Andreas Müller
08:46 PM feature request #3665 (In Progress): Further implementation of original spelling name caching
This has been mostly implemented in 4.7 and 4.8. Need to check if something is still open. Andreas Müller
08:36 PM bug #7781: original spelling is missing for accepted taxon in taxon page
As this is requested multiple times we should try to implement it in one of the next releases. Andreas Müller
08:35 PM feature request #9270: show original spelling on taxon page
This is probably a duplicate for #7781 Andreas Müller
08:28 PM feature request #9270 (Duplicate): show original spelling on taxon page
ERS:
Der Name Vulpia fontqueriana has original spelling Vulpia fontquerana.
Daher wird mir im Editor im Freitextb...
Andreas Müller
08:11 PM Revision d9495f8d (cdmlib): ref #8774: fix test in suite
Andreas Müller
08:08 PM Revision 12cee3aa (cdmlib): cleanup
Andreas Müller
05:02 PM Revision 7325a44d (cdmlib): cleanup
Andreas Müller
04:15 PM Revision 6320b0c9 (cdmlib): ref #6589 adapt cdmlib import scripts to new protologue handling
Andreas Müller
04:14 PM Revision 4f4efaf6 (cdmlib-apps): ref #6589 adapt import scripts to new protologue handling
Andreas Müller
03:08 PM Revision 41963d8b (taxeditor): ref #8774: smaller changes in character editor or correct right click menu usage
Katja Luther
03:07 PM Revision 63802ff3 (cdmlib): cleanup
Andreas Müller
03:03 PM Revision bb68e768 (cdmlib): cleanup
Andreas Müller
02:31 PM feature request #9134: Rule based creation of additional media representations "on the fly"
posting the SQL INSERT statement to add the default transformation to a DB:
~~~sql
INSERT INTO CdmPreference
(key_su...
Andreas Kohlbecker
01:57 PM feature request #9134: Rule based creation of additional media representations "on the fly"
Ok agreed, I am closing this ticket. Please open a new one for further discussion when needed. Andreas Kohlbecker
02:24 PM Revision 42b0120b (cdmlib): ref #8774: termnode dto tests - continue
Katja Luther
02:22 PM Revision 9958faa9 (cdmlib): ref #8774: correct termtyoe in characterDto
Katja Luther
02:15 PM Revision c10c3ee4 (cdmlib): ref #8774: avoid NPE when creating new Enum
Katja Luther
02:00 PM task #9269: discuss with the flora of greece people if the new image viewer is to be activated
I am assigning this ticket to you Andreas since you are the main contact for the FOG in the BDI group. Andreas Kohlbecker
01:59 PM task #9269 (New): discuss with the flora of greece people if the new image viewer is to be activated
please pass the ticket to me once we know the answer Andreas Kohlbecker
01:36 PM task #9268: Check cdm for GC G1 humongous objects problem
I can't see that we have objects of size in CDM real data Andreas Müller
01:16 PM task #9268 (New): Check cdm for GC G1 humongous objects problem
problems of the G1 when there are Objects >= 1MB in the heap:
https://dzone.com/articles/whats-wrong-with-big-ob...
Andreas Kohlbecker
01:13 PM task #8865: more external-links to be implemented
Email von Stefan Dressler und marco schmidt Frankfurt and Eckhard
Euro+Med/IDs:
für die Verlinkung zu uns wäre ...
Andreas Kohlbecker
11:29 AM Revision 5fe18fef (cdmlib): fix test (cont.)
Andreas Müller
11:14 AM Revision cc517ed6 (cdmlib): fix test
Andreas Müller
11:14 AM Revision 329ee45b (cdmlib): cleanup
Andreas Müller
10:23 AM Revision f6651fc4 (taxeditor): rename bundle name in local
Katja Luther
09:17 AM bug #9267: No sec reference for move change Synonym to accepted Taxon
please review Katja Luther
09:15 AM bug #9267 (Resolved): No sec reference for move change Synonym to accepted Taxon
Applied in changeset commit:cdmlib|593c7701c265521b6e3701942e0f6c7756304963. Katja Luther
09:01 AM bug #9267 (Closed): No sec reference for move change Synonym to accepted Taxon
mail WGB:
mir ist aufgefallen, dass beim Umwandeln eines Synonyms in einen akzeptierten Namen dem neuen Taxon eine...
Katja Luther
09:14 AM Revision 593c7701 (cdmlib): fix #9267: add no sec reference to newly created taxon moved from synonym
Katja Luther
08:44 AM bug #9263 (Resolved): Unify case for type designation status
This has been fixed by using lower case for specimen type designations now.
This lead to test failures in TypeDesi...
Andreas Müller

11/01/2020

08:51 AM Revision cafef344 (cdmlib): cleanup
Andreas Müller

10/30/2020

02:33 PM Revision db1795af (cdmlib): ref #8774: implement tests for dto handling - test changing representation
Katja Luther
02:23 PM Revision af4b4144 (cdmlib): ref #8774: implement tests for dto handling - comment the assert statement
Katja Luther
02:22 PM Revision 1edfe89d (cdmlib): ref #8774: implement tests for dto handling - continue
Katja Luther
02:20 PM Revision a1aece3d (cdmlib): ref #8774: implement tests for dto handling - continue
Katja Luther
02:03 PM feature request #6589 (Resolved): Handle protologue as original source with URI link
This is fixed now with model version 5.18.4.
However, #9266 and #9265 also need to be fixed before release
Andreas Müller
02:01 PM task #9266 (Closed): Remove protologue section from TaxEditor
after protologues have been moved now to nomenclaturalSource.externalLink. Andreas Müller
01:55 PM Revision cafb8a16 (cdmlib): ref #8774: implement tests for dto handling - to be continued
Katja Luther
01:54 PM Revision 22294efa (cdmlib): ref #8774: small change in dto creation
Katja Luther
12:36 PM Revision b029bf34 (cdmlib): fix test and cdmlight export with html tags
Katja Luther
12:36 PM Revision 5ec713a3 (cdmlib): revert: temporarily ignore CdmLightExportTest s
Andreas Müller
12:34 PM Revision a84e50c3 (cdmlib): temporarily ignore CdmLightExportTest s
Andreas Müller
10:55 AM Revision 9f095f86 (taxeditor): ref #6589 update taxeditor h2 test db
Andreas Müller
10:54 AM Revision 90b5ff20 (taxeditor): ref #8774: fix term combo for dto selection
Katja Luther
10:52 AM Revision 7fea2e65 (cdm-vaadin): ref #6589 update vaadin h2 test db
Andreas Müller
10:48 AM Revision bee1d8ab (cdmlib): ref #6589 fix update script (incorrect alias) and update remote-webapp h2 test db
Andreas Müller
10:47 AM Revision f5eab879 (cdmlib): ref #9262: fix homotypical group name comparator
Katja Luther
10:45 AM Revision f3ff329f (cdmlib): ref #8774: save plural of representation was missing
Katja Luther
10:40 AM Revision 1d4af21d (cdmlib): ref #8802 fix jaxb annotations for ExtendedTimePeriod
Andreas Müller
10:40 AM Revision 1d1b820e (cdmlib): ref #9263 use lower case for SpecimenTypeDesignationStatus
Andreas Müller
10:40 AM Revision cb45d97c (cdmlib): ref #6589 finalize update script for
Andreas Müller
10:40 AM Revision b45d1a7d (cdmlib): framework for SchemaUpdate to 5.18.4
Andreas Müller
09:23 AM feature request #9225 (Resolved): Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass
I think the vaadin test are now fixed (?). So can we close this ticket? Andreas Müller

10/29/2020

11:13 PM Revision d5603cc5 (cdmlib): ref #9262: add homotypic group strings
Katja Luther
09:50 PM Revision 900692d8 (taxeditor): revert changes
Katja Luther
09:19 PM Revision edc4e5ae (taxeditor): ref #8774: adapt term tree editors to dto usage
Katja Luther
04:54 PM Revision 4d68581f (cdmlib): ref #8774: further implementations for using term dtos in editor
Katja Luther
03:55 PM task #9265 (Closed): Adapt dataportal to new protologue handling
Protologues are now handled as external links of the nomenclatural source (#6589). The dataportals (and maybe webserv... Andreas Müller
03:54 PM feature request #6589: Handle protologue as original source with URI link
SQL to find linking data to DescriptionBase holding the protologue image
~~~sql
SELECT n.titleCache
FROM TaxonN...
Andreas Müller
03:54 PM feature request #6589: Handle protologue as original source with URI link
SQL to find linking data to TextData holding the protologue image
~~~sql
SELECT DO.sources_id -- DO.DescriptionEl...
Andreas Müller
03:53 PM feature request #6589: Handle protologue as original source with URI link
~~The following records (sources for textdata) should also be deleted from AUD tables in Cichorieae . All other DBs d... Andreas Müller
03:07 PM Revision a63cd5d3 (cdmlib): ref #8802 add TemporalData to jaxb annotation in DescriptionBase
Andreas Müller
03:07 PM Revision 2ee2a9f2 (cdmlib): cleanup
Andreas Müller

10/28/2020

12:14 PM Revision cc5f5067 (cdmlib): ref #69554: additional homotypic group strings
Katja Luther

10/27/2020

01:44 PM Revision 575c50be (taxeditor): catch widget is disposed
Katja Luther
01:09 PM Revision c64a02e7 (cdmlib): ref #69554: fix test
Katja Luther
11:58 AM Revision 9f7f7692 (cdmlib): ref #69554: adapt cdmLight export
Katja Luther
11:14 AM bug #9263 (In Progress): Unify case for type designation status
NKo: ich würde sagen, wenn es als Satzanfang ausgegeben wird, dann groß, sonst klein. Auf gar keinen Fall abkürzen.
...
Andreas Müller

10/26/2020

11:23 AM bug #9264 (Closed): Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button
mail WB:
ich habe die Caryophyllales_spp gerade aufgemacht und nach Hammada articulata gesucht und das Resultat (H...
Katja Luther

10/24/2020

09:28 AM feature request #9246 (Duplicate): Additional fields in cdmLIght export
this ticket duplicates #9262 Andreas Müller

10/23/2020

11:00 PM Revision f36cf20b (cdmlib): ref #9262 further cleanup citation handling in TypeDesignationSetManager (cont.)
Andreas Müller
10:55 PM Revision f323d2c8 (cdmlib): cleanup
Andreas Müller
10:55 PM Revision f9f1f4a3 (cdmlib): ref #9262 further cleanup citation handling in TypeDesignationSetManager
Andreas Müller
10:54 PM Revision f6cadc73 (cdmlib): cleanup TypeDesignationSetManager
Andreas Müller
10:49 PM Revision ef013705 (cdmlib): ref #9262 fix failing test by adding lectotype to name type status in test terms
Andreas Müller
08:48 PM Revision 085f44ab (cdmlib): ref #9262 unify buildString methods in TypeDesignationSetManager and unify some minor formatting issues
Andreas Müller
07:48 PM Revision b7900258 (cdmlib): remove deprecated method from TypeDesignationSetManager
Andreas Müller
06:00 PM bug #9263 (Closed): Unify case for type designation status
Current csv files use lower case for NameTypeDesignationStatus and upper case for SpecimenTypeDesignationStatus. This... Andreas Müller
05:43 PM Revision bdb70df7 (cdmlib): ref #9262 javadoc link to ticket
Andreas Müller
05:42 PM Revision ff136ac1 (cdmlib): correct rank for name type tests in TypeDesignationSetManagerTest
Andreas Müller
05:38 PM Revision 742c4c12 (cdmlib): ref #9262 add test for lecto-nametype with designated by and fide
Andreas Müller
04:49 PM Revision 0a854685 (cdm-dataportal): Merge branch 'occurrences-in-tables' into develop
Andreas Kohlbecker
04:49 PM Revision e809ac5d (cdm-dataportal): ref #7599, ref #8419 specimen tree view with nested tables
Andreas Kohlbecker
03:25 PM Revision 38cdb834 (cdmlib): ref #9262 move lectotype citation for name types in stringify(NameTypeDesignation) method
Andreas Müller
03:19 PM Revision e346d276 (cdmlib): cleanup
Andreas Müller
11:55 AM Revision 0ad005e1 (cdmlib): ref #9262 move designated by out of brackets
Andreas Müller
11:53 AM Revision 9bcc56f3 (cdmlib): cleanup
Andreas Müller
08:30 AM Revision 79180ba0 (cdm-vaadin): ref #7936 removing handler for redmine messaging exceptions
Andreas Kohlbecker

10/22/2020

07:14 PM Revision 9eab4a32 (cdmlib): ref #9262 fix et. al position in cdmlight
Andreas Müller
06:51 PM Revision f2ab76ab (cdmlib): fix linux compilation issue
Andreas Müller
06:46 PM Revision 5237bd86 (cdmlib): improve javadoc link
Andreas Müller
06:42 PM Revision 30190957 (cdmlib): ref #9262 fix fide and designated by handling for cdmlight export and TypeDesignationSetManager
Andreas Müller
06:28 PM Revision bef3ccce (cdmlib): cleanup
Andreas Müller
06:08 PM Revision 413ff959 (cdmlib): updating maven-antrun-plugin configuration to conform to version 3.0.0 - final bug fix
Andreas Kohlbecker
04:57 PM Revision d0a7386d (cdmlib): updating maven-antrun-plugin configuration to conform to version 3.0.0 - bug fix
Andreas Kohlbecker
04:31 PM Revision eea35c81 (cdmlib): updating maven-antrun-plugin configuration to conform to version 3.0.0 - bug fix
Andreas Kohlbecker
04:23 PM Revision 6b834cf6 (cdmlib): updating maven-antrun-plugin configuration to conform to version 3.0.0 - bug fix
Andreas Kohlbecker
04:11 PM Revision 9c9b6874 (cdmlib): ref #9252 adding MediaSpecimen.media to DerivedUnitDTO.listOfMedia
Andreas Kohlbecker
04:07 PM Revision a009dfe6 (cdmlib): fixing compilation problem stemming from outdated javadoc @link references
Andreas Kohlbecker
04:07 PM Revision 9db34f82 (cdmlib): updating maven-antrun-plugin configuration to conform to version 3.0.0
Andreas Kohlbecker
02:31 PM Revision 99bcfa16 (cdmlib): cleanup
Andreas Müller
01:40 PM Revision 772c2fdb (cdmlib): improve generics for TypeDesignationSetManager TypedEntityReference
Andreas Müller
01:40 PM Revision a06014f5 (cdmlib): cleanup
Andreas Müller
01:28 PM Revision 5370c90a (cdm-dataportal): ref #8419 table headers with internal links
Andreas Kohlbecker
01:28 PM Revision 3cea6e15 (cdm-dataportal): ref #8419 using tables to show occurrence details
Andreas Kohlbecker
01:26 PM Revision d7d8ad90 (cdm-dataportal): Merge branch 'support/5.17.2' into develop
Andreas Kohlbecker
12:45 PM feature request #9262 (Closed): Several open issues for cdmlight export related to Cactaceae and other Caryophallales
Mail WGB 2020-10-22:
1. ~~Fehlerhafter Literatur-Output – zwei Autoren + et al. statt Erstautor + et al., siehe an...
Andreas Müller
12:15 PM bug #9260 (Closed): error in pages.inc calling compose_taxon_node_status()
Andreas Kohlbecker
12:15 PM bug #9261 (Closed): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes()
Andreas Kohlbecker
12:15 PM bug #9261 (Resolved): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes()
Applied in changeset commit:cdmlib|8728f23bae0e8758c46f09837af01070922d1d41. Andreas Kohlbecker
11:35 AM bug #9261 (Closed): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes()
http://api.cybertaxonomy.org/caryophyllales/portal/taxon/b6ec8d50-7f37-4a17-af01-b1fae138c749/taxonNodes.json fails w... Andreas Kohlbecker
12:14 PM Revision 8728f23b (cdmlib): fix #9261 extending init strategy to avoid LIEs in TaxonController
Andreas Kohlbecker

10/21/2020

02:17 PM Revision 6e0129cb (cdm-dataportal): ref #9260 avoiding fatal error in case of web service failure
Andreas Kohlbecker
02:13 PM Revision 098e4095 (cdm-dataportal): ref #9259 adapting portal
Andreas Kohlbecker
01:09 PM Revision 63503e49 (cdm-dataportal): Merge branch 'support/5.17.2' into develop
Andreas Kohlbecker
12:42 PM Revision 8a788533 (cdm-dataportal): fixing bug in layer bounds calculation - 2
Andreas Kohlbecker
12:06 PM Revision b14f308a (cdm-dataportal): fixing bug in layer bounds calculation
Andreas Kohlbecker
10:02 AM bug #9260 (Closed): error in pages.inc calling compose_taxon_node_status()
http://caryophyllales.org/cdm_dataportal/taxon/b6ec8d50-7f37-4a17-af01-b1fae138c749
~~~
Recoverable fatal error: ...
Andreas Kohlbecker

10/20/2020

09:27 PM Revision 05b014a3 (taxeditor): revert "preliminary throw exception for invalid URIs"
Andreas Müller
07:49 PM Revision 27769d89 (taxeditor): fix NPE and ConcurrentModifiationException in removeLabelException()
Andreas Müller
07:18 PM Revision b4543dac (taxeditor): preliminary throw exception for invalid URIs
Andreas Müller
07:18 PM Revision 6ac89129 (taxeditor): cleanup
Andreas Müller
06:24 PM Revision 9de7a9ea (cdmlib): remove redmine-java-api version from parent pom
Andreas Müller
06:20 PM Revision 7e05cce6 (cdmlib): remove 2 deprecated methods from ImagesUtility
Andreas Müller
06:20 PM Revision dc9e54ed (cdmlib): cleanup
Andreas Müller
05:14 PM Revision 58618089 (cdm-dataportal): Merge branch 'support/5.17.2' into develop
Andreas Kohlbecker
05:02 PM Revision cfef9b81 (cdm-dataportal): adapting map extent calculation to modified behavior of area.php
Andreas Kohlbecker
02:56 PM Revision b1f25a11 (cdm-dataportal): ref #8419 speciemen tree view: defined order of child derivatives - adapting test case
Andreas Kohlbecker
02:35 PM Revision 17853a0b (cdm-dataportal): Merge branch 'support/5.17.2' into develop
Andreas Kohlbecker
02:35 PM Revision 4bf94c23 (cdm-dataportal): sending bbox to rest_gen.php only transformed for EPSG4326 - bugfix
Andreas Kohlbecker
02:15 PM Revision dc0f7c29 (cdm-dataportal): Merge branch 'support/5.17.2' into develop
Andreas Kohlbecker
01:53 PM Revision dab257a8 (cdm-dataportal): ref #8419 speciemen tree view: defined order of child derivatives
Andreas Kohlbecker
01:41 PM Revision 0a1cb264 (cdm-dataportal): test method comments
Andreas Kohlbecker
01:13 PM task #8081: Complete removal of redmine communication hub instances
all code has been removed now! see #7936 Andreas Kohlbecker
01:12 PM task #7315 (Rejected): remove workaround RedmineTransportAccessor
no longer needed, since the redmine message hub has been completely rejected Andreas Kohlbecker
01:10 PM bug #7936 (Closed): Consider complete removal of redmine communication hub code
Andreas Kohlbecker
01:08 PM Revision 2ee5f0e4 (cdmlib): ref #7936 removing redmine-api dependency and unused ExternalServiceException
Andreas Kohlbecker
01:08 PM Revision 03f21108 (cdmlib): ref #7936 full removal of redmine communication hub code
Andreas Kohlbecker
01:07 PM Revision d0db04ae (taxeditor): ref #7936 removing redmine-api dependency from taxeditor
Andreas Kohlbecker
11:50 AM Revision 1f22b30d (cdm-dataportal): sending bbox to rest_gen.php only transformed for EPSG4326
Andreas Kohlbecker
11:37 AM Revision af612856 (cdmlib): archive old schema updaters (combine packages)
Andreas Müller
11:30 AM Revision 3c3d7701 (cdm-dataportal): ref #9259 adapting dataportal to modified term serialization
Andreas Kohlbecker
10:20 AM Revision 55344030 (taxeditor): fix NPE in TypeDesignationSection
Andreas Müller
10:20 AM Revision ced08e17 (taxeditor): cleanup
Andreas Müller
07:54 AM Revision da072b17 (cdm-dataportal): Merge branch 'support/5.17.2' into develop
Andreas Kohlbecker
07:45 AM Revision 41910d88 (cdm-dataportal): fixing exuecution order problem in test class and reverting footnote key changes
Andreas Kohlbecker
07:35 AM Revision 8031902e (cdm-dataportal): ref #8419 supressing most significantIndentifier in specimen tree view
Andreas Kohlbecker

10/19/2020

11:29 PM bug #9245: Creating derived units from existing derived unit is not possible in specimen tree editor
This ticket needs to be fixed urgently as it makes the specimen tree editor impossible to use Andreas Müller
10:44 PM Revision 604416f3 (taxeditor): ref #9252 adapting Taxeditor to modified DTOs - 3
Andreas Kohlbecker
09:58 PM Revision 7b687a41 (cdm-dataportal): adapting to latest dto changes and to updated render template settings in DB
Andreas Kohlbecker
09:56 PM Revision 33d3036f (cdmlib): ref #9252 adding mostSignificantIdentifier to DerivedUnitDTO
Andreas Kohlbecker
09:41 PM Revision d9b0c185 (cdmlib): ref #9252 using TypedEntityReference for DerivedUnitDTO.associatedTaxa
Andreas Kohlbecker
07:50 PM Revision 7502200f (taxeditor): ref #9252 adapting Taxeditor to modified DTOs - 2
Andreas Kohlbecker
05:04 PM bug #6757: AbcdImportWizard has all configurator flags set to false
Is this still an open issue? If yes we should fix it soon (probably a no-brainer), if not, we should close this ticke... Andreas Müller
04:54 PM Revision 107fdc7d (taxeditor): ref #9204 update junit to 4.13.1 in TaxEditor (cont.)
Andreas Müller
04:28 PM Revision f0d35b30 (cdmlib): try to remove direct dependencies (junit and log4j) from cdmlib-parent (cont.)
Andreas Müller
04:20 PM Revision 82e4e13a (cdmlib): ref #9204 update junit to 4.13.1 in cdmlib
Andreas Müller
04:19 PM Revision 1879274b (taxeditor): ref #9204 update junit to 4.13.1 in TaxEditor
Andreas Müller
04:09 PM Revision 0eb187f5 (taxeditor): ref #9252 adapting Taxeditor to moodified DTOs
Andreas Kohlbecker
04:08 PM Revision e1779d28 (cdmlib): ref #9252 adding id as propery to recover lost UuidAndTitleCache property for the taxeditor
Andreas Kohlbecker
04:06 PM Revision ff730337 (cdmlib): try to remove direct dependencies (junit and log4j) from cdmlib-parent
Andreas Müller
02:09 PM Revision afcf5f85 (cdmlib): ref #9252 maving fieldUnitDTO creation into transactional context - fixing careless mistake
Andreas Kohlbecker
02:05 PM task #9252 (Resolved): Harmonize SpecimenOrOberservationBase related DTOs
should be solved now, needs review Andreas Kohlbecker
02:05 PM Revision de30431b (cdmlib): ref #9252 maving fieldUnitDTO creation into transactional context
Andreas Kohlbecker
01:55 PM Revision a870ef69 (cdmlib): try to fix failing (in suite) test (cont.)
Andreas Müller
01:49 PM Revision 41c4bff5 (cdmlib): try to fix failing (in suite) test (cont.)
Andreas Müller
01:49 PM Revision e9fcfee8 (cdmlib): cleanup
Andreas Müller
01:33 PM Revision e5f49216 (cdmlib): try to fix failing (in suite) test
Andreas Müller
01:33 PM Revision 28339232 (cdmlib): remove some further null values from test data
Andreas Müller
01:32 PM Revision 9e6f7278 (cdmlib): cleanup
Andreas Müller
01:15 PM Revision c8c5fe7b (cdmlib): cleanup
Andreas Müller
01:13 PM Revision d5b2e2e8 (cdm-dataportal): ref #8419 fixing bug render hints usage and new render template default for names in speciemen views
Andreas Kohlbecker
01:13 PM Revision 293a199b (cdmlib): remove some null values from test data
Andreas Müller
12:36 PM Revision d945b5ca (cdm-dataportal): forcing untiled maps for all wms requests - setting ratio for single tiles from options
Andreas Kohlbecker
12:29 PM Revision a9acb2d4 (cdm-dataportal): forcing untiled maps for all wms requests
Andreas Kohlbecker
09:56 AM task #9259 (Closed): reduce fields in TermBase json serializations
Andreas Kohlbecker
09:55 AM task #9259 (Resolved): reduce fields in TermBase json serializations
Applied in changeset commit:cdmlib|3ae4f12f20159b7e0ddb04c68f4bfc5fb17d5481. Andreas Kohlbecker
09:43 AM task #9259 (In Progress): reduce fields in TermBase json serializations
Andreas Kohlbecker
09:43 AM task #9259 (Closed): reduce fields in TermBase json serializations
The fields in json serializations produced by the TermBaseBeanProcessor can be reduced.
here an example of the cur...
Andreas Kohlbecker
09:55 AM Revision 3ae4f12f (cdmlib): fix #9259 reducing fields in TermBase json serializations
Andreas Kohlbecker
09:40 AM Revision ce9ce745 (cdm-dataportal): ref #9252 adapting test
Andreas Kohlbecker
09:39 AM Revision 56a041f8 (cdm-dataportal): ref #8419 specimen tree view: display of specimen type designations optional (disabled)
Andreas Kohlbecker
09:38 AM Revision 71d2f44c (cdm-dataportal): fixing outdated curly braces array syntax
Andreas Kohlbecker
08:59 AM Revision 2de25dc7 (cdm-dataportal): fixing outdated curly braces array syntax
Andreas Kohlbecker
08:28 AM Revision d1088a53 (cdm-dataportal): ref #9252 adapting portal to latest DTO changes
Andreas Kohlbecker
08:27 AM Revision 7e0e6396 (cdmlib): ref #9252 using DefinedTermBase for term fields in DTOs and TypedEdityRefernce for indentifications
Andreas Kohlbecker

10/16/2020

06:02 PM Revision 2e893626 (cdm-dataportal): ref #9252 localizing kind of unit in SpecimenOrObservationBaseDTO - adapting portal
Andreas Kohlbecker
06:01 PM Revision c15eb727 (cdmlib): ref #9252 localizing kind of unit in SpecimenOrObservationBaseDTO
Andreas Kohlbecker
01:50 PM feature request #9258 (Closed): Use Partial for date in FieldUnitDTO
Andreas Kohlbecker
01:50 PM feature request #9258 (Resolved): Use Partial for date in FieldUnitDTO
Applied in changeset commit:cdmlib|e0089f681023c823ee9424dfe2ac550065414474. Andreas Kohlbecker
12:11 PM feature request #9258 (Closed): Use Partial for date in FieldUnitDTO
FieldUnitDTO contains the date as pure string this has at least two problems:
* FieldUnitDTOs can not be reliably ...
Andreas Kohlbecker
01:50 PM Revision e0089f68 (cdmlib): fix #9258 using Partial for date field in FieldUnitDTO
Andreas Kohlbecker
01:06 PM Revision afead756 (cdm-dataportal): adapting portal and test to new FieldDTO.specimenIdentifier field - 2
Andreas Kohlbecker
01:05 PM Revision 7eb0d308 (cdm-dataportal): adapting portal and test to new FieldDTO.specimenIdentifier field
Andreas Kohlbecker
12:06 PM Revision eacf1ee2 (cdm-dataportal): ref #9252, ref #8423 adapting specimen tree view to fixed derivate path mergring and other changes
Andreas Kohlbecker
12:04 PM Revision 69b6c2b3 (cdmlib): ref #8419 ref #9252 introducing specimenIdentifier field in DTO and experimental accessionNumber cleanup
Andreas Kohlbecker
12:03 PM task #9253 (In Progress): revise OccurrenceServiceImpl.findFieldUnitDTO(..)
Andreas Kohlbecker
08:59 AM bug #8423 (Resolved): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives
Andreas Kohlbecker
08:59 AM bug #8423 (Closed): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives
Andreas Kohlbecker
08:58 AM Revision e4979fe2 (cdmlib): ref #8423 OccurrenceServiceImpl.findFieldUnitDTO() : fixing merge problem of derivate paths
Andreas Kohlbecker

10/15/2020

09:34 PM Revision 5d299395 (cdmlib): ref #9253 cleaning up caller of OccurrenceServiceImpl.findFieldUnitDTO(..)
Andreas Kohlbecker
09:30 PM bug #8423 (In Progress): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives
Andreas Kohlbecker
09:26 PM Revision 864cab25 (cdmlib): ref #8423 raising log level of problematic situation and code cleaning
Andreas Kohlbecker
05:40 PM Revision b1a675d1 (cdmlib): ref #8423 ref #9253, ref #9252 fixing duplicate addition of DerivedUnitDTOs
Andreas Kohlbecker
05:28 PM Revision 970272ed (cdmlib): ref #9252 basing SpecimenOrObservationBaseDTO on TypedEntityReference
Andreas Kohlbecker
04:48 PM Revision 7d539adb (cdm-dataportal): ref #9252 supressing FieldUnitDTO fields in specimen tree view
Andreas Kohlbecker
04:13 PM Revision 5830e16a (cdm-dataportal): ref #9252 adapting specimen tree view to more data coming witgh FieldUnitDTO
Andreas Kohlbecker
03:38 PM task #9252: Harmonize SpecimenOrOberservationBase related DTOs
now only the term related tasks are left to do Andreas Kohlbecker
03:36 PM task #9252 (In Progress): Harmonize SpecimenOrOberservationBase related DTOs
Andreas Kohlbecker
03:35 PM Revision a9527b12 (cdmlib): ref #9252 determinig hasTypes from actual data and fixing type probelms in methods
Andreas Kohlbecker
03:26 PM Revision 90957da7 (cdmlib-apps): latest changes to GreeceImageActivator
Andreas Müller
12:51 PM bug #9257 (Feedback): revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen
Hi Katja & AM, the current implementation partially filters for DerivedUnits of the type `SpecimenOrObservationType.P... Andreas Kohlbecker
12:14 PM bug #9257 (Closed): revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen
see FIXME comment in method Andreas Kohlbecker
12:46 PM Revision aa52b6f0 (cdmlib): ref #9257 comments including questions on missing filtering in the DrivedUnitDTO construction
Andreas Kohlbecker
12:27 PM Revision 06b2c5f6 (cdmlib): ref #9252 ref #9257 exposing SpecimenOrObservationType filter to factory method and better flag handling
Andreas Kohlbecker
12:17 PM bug #9256 (Resolved): CdmLightExport: NameTypeDesignation string misses parenthesis for authors
Katja Luther
11:58 AM bug #9256 (Closed): CdmLightExport: NameTypeDesignation string misses parenthesis for authors
mail WB:
ein unangenehmer (und, glaube ich, neuer) Bug in HomotypicGroup.csv:
In der Spalte „TypeSpecimenString...
Katja Luther
12:12 PM bug #9254 (Closed): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
Andreas Kohlbecker
11:40 AM bug #9254 (Resolved): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
Applied in changeset commit:cdmlib|5a1fd3284147ad65dc6408afa94956df19fd07e1. Andreas Kohlbecker
11:39 AM bug #9254 (Closed): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
The request on portal/occurrence/{uuid}/fieldUnitDTO.json with the uuid of a FieldUnit fails with a ClassCast exception Andreas Kohlbecker
12:10 PM Revision 80fc1bdb (cdmlib): ref #9256: fix bug in nametypedesignation string
Katja Luther
11:43 AM task #9255 (New): DerivateDataDTO implement support for TissueSample
see TODO comment in `public static DerivateDataDTO fromEntity()` at line 62. Andreas Kohlbecker
11:40 AM Revision 5a1fd328 (cdmlib): fix #9254 removing restriction to DerivedUnit in conmroller method
Andreas Kohlbecker
11:25 AM Revision ddef3633 (cdmlib): ref #9253 todo comment
Andreas Kohlbecker
11:09 AM task #9253 (Closed): revise OccurrenceServiceImpl.findFieldUnitDTO(..)
This intended function of `FieldUnitDTO OccurrenceServiceImpl.findFieldUnitDTO(DerivateDTO derivedUnitDTO, Collection... Andreas Kohlbecker
08:52 AM Revision 8dcc00a3 (cdmlib): ref #9252 adapting service method no new DTO name
Andreas Kohlbecker
08:34 AM Revision a72a8bbf (taxeditor): ref #9252 adapting texedior to renamed DTO classes
Andreas Kohlbecker
 

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