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From 01/12/2020 to 02/10/2020

02/10/2020

05:27 PM bug #8812: Connection losses in taxeditor HTTP invoker (RemoteAccessException: Could not access HTTP invoker remote service at ...)
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > I don't think the dependency handling for httpcomponents is c...
Andreas Müller
05:16 PM bug #8812: Connection losses in taxeditor HTTP invoker (RemoteAccessException: Could not access HTTP invoker remote service at ...)
Andreas Müller wrote:
> I don't think the dependency handling for httpcomponents is correct. Dependencies inherited ...
Andreas Kohlbecker
04:53 PM bug #8812: Connection losses in taxeditor HTTP invoker (RemoteAccessException: Could not access HTTP invoker remote service at ...)
I don't think the dependency handling for httpcomponents is correct. Dependencies inherrited from cdmlib are handled ... Andreas Müller
05:23 PM Revision a2839297 (cdmlib): allow adding reverse representations to taxon relationship type during import
Andreas Müller
05:22 PM Revision b729928e (cdmlib): cleanup
Andreas Müller
05:20 PM Revision bed66cf1 (cdmlib): remove commented test dependencies from ext-pom
Andreas Müller
04:56 PM task #8840: Display identifiers in the dataportal
Andreas Kohlbecker wrote:
> Also consider transformation of IPNI-LSIDs to identifiers.
Can you explain what is me...
Andreas Müller
12:44 PM Revision 75785495 (taxeditor): cleanup
Andreas Müller
12:36 PM Revision b83b73a7 (taxeditor): ref #8812 logging of request duration in case of socket timeouts
Andreas Kohlbecker
12:34 PM Revision d9511145 (taxeditor): ref #8812 connect request timeouts and more doc on timeouts
Andreas Kohlbecker
11:38 AM Revision 76f6b44c (taxeditor): ref #8812 upgrading httpcomponents to 4.5.11 - cleanup
Andreas Kohlbecker
10:54 AM Revision 82227023 (taxeditor): ref #8812 upgrading httpcomponents to 4.5.11
Andreas Kohlbecker

02/06/2020

12:03 PM bug #8846 (Worksforme): Correctly parsed nomenclatural reference uncorrectly saved when taxon has relationship
Hallo liebes Editor Team,
ich habe einen etwas merkwürdigen Fehler, der ohne Fehlermeldung auftritt.
Wenn ich bei d...
Katja Luther
10:41 AM task #8844 (Closed): distinguish SocketTimeoutException from ConnectException
this looks good. Katja Luther

02/05/2020

05:51 PM bug #8845 (Closed): external links: GGBN not shoing up in admin section
Andreas Kohlbecker
05:50 PM bug #8845 (Resolved): external links: GGBN not shoing up in admin section
Applied in changeset commit:cdm-dataportal|10c4424f1f9360d42e2c22d9c4ddddc49b98e88b. Andreas Kohlbecker
05:35 PM bug #8845 (Closed): external links: GGBN not shoing up in admin section
This is most probably caused by commenting the "Fairchild Guide To Palms" link. By this the array keys are no longer ... Andreas Kohlbecker
05:50 PM Revision 10c4424f (cdm-dataportal): fix #8845 fixing bug in ext-links introduced by commenting broken link and invalid key for GGBN
Andreas Kohlbecker
04:51 PM task #8844 (Resolved): distinguish SocketTimeoutException from ConnectException
Hi Katja, can you please have a look at my solution? Andreas Kohlbecker
03:16 PM task #8844 (Closed): distinguish SocketTimeoutException from ConnectException
SocketTimeoutExceptions which are caused by bad network quality between client and server should be distinguished fro... Andreas Kohlbecker
04:50 PM Revision c29cc6f1 (taxeditor): ref #8844 specific message in case of SockeTimeoutExceptions
Andreas Kohlbecker
04:49 PM Revision 2c520578 (taxeditor): ref #8812 replacing deprecated usage of apache HttpClient by new classes
Andreas Kohlbecker
01:53 PM Revision 090b67e0 (cdmlib): ref #8562: adapt language preference predicates
Katja Luther
12:39 PM bug #8843 (New): Revise term caching
The actual mechanisms of the term caching in the teaxeditor is unclear and undocumented. Several parallel classes and... Andreas Kohlbecker
12:15 PM bug #8842 (Resolved): CdmServiceRequestExecutor is not stateleass and neither thread save nor access synchronized
The commit:taxeditor|1c21abc1 most probably removed at least two potential root causes for MultipleRepresentation pro... Andreas Kohlbecker
11:21 AM bug #8842 (In Progress): CdmServiceRequestExecutor is not stateleass and neither thread save nor access synchronized
Andreas Kohlbecker
12:03 PM Revision e2bff0b1 (taxeditor): ref #8842 claning up - removing obsolete classes and renaming
Andreas Kohlbecker
12:02 PM Revision 1c21abc1 (taxeditor): ref #8842 replacing caching in CdmServiceRequestExecutor by CachingHttpInvokerProxyFactoryBean to avoid having states
Andreas Kohlbecker

02/04/2020

04:34 PM Revision 7a05f578 (taxeditor): ref #8812 proper exception handling in RequestExecutor for more meaningful error messages
Andreas Kohlbecker
01:59 PM bug #8842 (Resolved): CdmServiceRequestExecutor is not stateleass and neither thread save nor access synchronized
CdmServiceRequestExecutor uses the field
~~~java
private RemoteInvocation currentRemoteInvocation;
~~~
to re...
Andreas Kohlbecker
11:10 AM Revision 9aae99e8 (taxeditor): ref #8841 cleaning up application context config - step 1
Andreas Kohlbecker
10:28 AM task #8841 (In Progress): clean up application context configuration
Andreas Kohlbecker
10:28 AM task #8841 (In Progress): clean up application context configuration
The spring app config in the taxeditor project is messy:
* obsolete XML configuration files
* obsolete context sc...
Andreas Kohlbecker

02/03/2020

05:12 PM bug #8812: Connection losses in taxeditor HTTP invoker (RemoteAccessException: Could not access HTTP invoker remote service at ...)
an analysis of the reported RemoteAccessException as found in my Emails shows that the exceptions are having specific... Andreas Kohlbecker
03:36 PM Revision 90b2c296 (cdm-dataportal): ref #8813 installing new version of DejaVu downloaded from font-squirrel
Andreas Kohlbecker
02:47 PM feature request #8044: Add "Move to..." menu to term editor
Applied in changeset commit:taxeditor|bac71f46b6eb8bf94a76efbb9217525700259da2. Katja Luther
02:37 PM feature request #8044 (Resolved): Add "Move to..." menu to term editor
this is fixed now, please review Katja Luther
02:47 PM Revision bac71f46 (taxeditor): fix #8044: remove injected method
Katja Luther
02:45 PM task #8813: Zen theme base font with better redability
The DejaVu font seems to cause Problem in Win10 where the render engine of edge and FF apparently is not using font s... Andreas Kohlbecker
02:39 PM bug #8763 (Duplicate): Remaining issues for "Move term" in term editor
as this ticket contains nearly the same issues mentioned in #8044, I close this ticket as duplicate Katja Luther
02:36 PM Revision cb827f5e (taxeditor): ref #8763: disable multiselect
Katja Luther
02:25 PM task #8840 (New): Display identifiers in the dataportal
identifiers for all cdm types need to be shown (`IdentifiableEntity.identifier`)
Identifiers exist in Caryophyllal...
Andreas Kohlbecker
01:35 PM Revision 419f60bc (cdm-dataportal): Revert "version param for fonts to force reloading"
This reverts commit 641bfcf8e442ac671dea910b9392ba610bc06237. Andreas Kohlbecker
01:30 PM Revision 641bfcf8 (cdm-dataportal): version param for fonts to force reloading
Andreas Kohlbecker
11:30 AM Revision a57fcfb4 (taxeditor): ref #8763: set search button to default
Katja Luther
09:54 AM Revision 501ec636 (cdmlib): ref #8044: add missing termcollection dto
Katja Luther

01/31/2020

09:47 AM Revision 87bd976a (cdmlib-apps): ref #1447 further improve findIdenticalNames for PESI
Andreas Müller
09:46 AM Revision fbdb38bb (cdmlib-apps): add inverse labels to pseudoaccepted relationship
Andreas Müller
09:45 AM Revision 6a6d7b26 (cdmlib-apps): cleanup
Andreas Müller

01/30/2020

05:07 PM bug #8839: Role misses toString method
Is there a reason for using getRole() instead of directly referencing the role field? For toString() methods it is be... Andreas Müller
11:39 AM bug #8839 (Resolved): Role misses toString method
Applied in changeset commit:cdmlib|a2c52f5908705d903861a83541ae556214bff646. Andreas Kohlbecker
11:36 AM bug #8839 (Closed): Role misses toString method
Error messages regarding missing roles are quite cryptical these days:
~~~
org.eclipse.e4.core.di.InjectionExcept...
Andreas Kohlbecker
04:54 PM feature request #4011: disallow changing publish flag for users with unsuffcient rights
So I put it back to you. Please decide if you need to pass it to Katja. Also if you want to change the milestone. But... Andreas Müller
11:00 AM feature request #4011: disallow changing publish flag for users with unsuffcient rights
this is still an open issue and causes confusion to the E+M editor - needs to be fixed quite soon. Andreas Kohlbecker
03:10 PM bug #8812 (In Progress): Connection losses in taxeditor HTTP invoker (RemoteAccessException: Could not access HTTP invoker remote service at ...)
Andreas Kohlbecker
02:51 PM Revision 2d38478f (taxeditor): ref #8044: search for vocs and do not show selected term
Katja Luther
02:50 PM Revision 1626b3d2 (cdmlib): ref #8044: add service/persistence method to get vocDto for pattern
Katja Luther
11:39 AM Revision a2c52f59 (cdmlib): fix #8839 toString() for Role
Andreas Kohlbecker
11:33 AM bug #8838 (Rejected): misapplied names without authors are not found
*Orobanche elatior* has an authorship and it is actually found as "*Orobanche elatior* Sutton" but it is not clear th... Andreas Kohlbecker
11:14 AM bug #8838 (Rejected): misapplied names without authors are not found
Example:
Orobanche elatior misapplied name for Orobanche centaurina in europlus med
Andreas Kohlbecker
10:56 AM bug #8837 (Worksforme): Name editor is not updated after change accepted to synonym
Andreas Kohlbecker
10:07 AM task #8835: DISCUSS if the UPDATE & DELETE permission stategy should become a general principle in the cdmlib
I take this ticket as I am more involved into this topic. Andreas Kohlbecker

01/29/2020

11:28 PM task #8835: DISCUSS if the UPDATE & DELETE permission stategy should become a general principle in the cdmlib
I think I should not be assignee. Katja, Andreas, can you please decide who will care? Andreas Müller
05:06 PM task #8835 (New): DISCUSS if the UPDATE & DELETE permission stategy should become a general principle in the cdmlib
During the E+M Training (2020-01-19) it turned out that the current default permissions are not complete to allow con... Andreas Kohlbecker
05:09 PM bug #8836 (Closed): add default role Editor-Reference (REFERENCE.[UPDATE,DELETE], TEAMORPERSONBASE.[UPDATE,DELETE])
During the E+M Training (2020-01-19) it turned out that the current default permissions are not complete to allow con... Andreas Kohlbecker
10:24 AM feature request #8749 (Resolved): Add proposalProvider to AbstractComboElement
Katja Luther
09:05 AM feature request #8749 (In Progress): Add proposalProvider to AbstractComboElement
Katja Luther

01/28/2020

02:02 PM bug #8733 (In Progress): Descriptive data set: Specimens of a newly added taxon are not listed in Select Specimen dialog of the matrix editor
When adding or deleting a taxonnode filter to descriptive dataset the specimen cache of the matrix is set to null and... Katja Luther
01:58 PM Revision cea4a1b4 (cdmlib): ref #8733: load descritive dataset before getting specimen
Katja Luther
01:58 PM Revision fa4b35d0 (cdmlib): handle cf determinations correctly
Katja Luther
12:32 PM bug #8833: distribution editor: Exception when filtering by taxon
solving this issue may be obsolete once #8834 is solved Andreas Kohlbecker
12:30 PM task #8834 (Closed): use TaxonNodeDto instead of UuidAndTitleCache
in #8815 the UuidAndTitleCache methods are to be removed. The vaadin apps need to be adapted accordingly. Andreas Kohlbecker
12:00 PM feature request #8756: Refresh button for structure tree and property tree in Character Editor
please review Katja Luther
11:59 AM feature request #8756 (Resolved): Refresh button for structure tree and property tree in Character Editor
Applied in changeset commit:taxeditor|e751d1723a238ce06ee6b1dc0cd67399a7ae8618. Katja Luther
12:00 PM Revision 5ad5e48c (taxeditor): fix #8756: code cleaning
Katja Luther
11:59 AM Revision e751d172 (taxeditor): fix #8756: add refresh button to structure and property tree viewer
Katja Luther
11:42 AM bug #8828 (Resolved): statistical values must not show empty brackets
Applied in changeset commit:cdm-dataportal|7f36e33afada1e19bcf605586e9ade4c64a2c264. Andreas Kohlbecker
11:42 AM Revision 7f36e33a (cdm-dataportal): fix #8828 removing empty brackets from statistical values in QuantitativeData and cleaning up
Andreas Kohlbecker
11:39 AM feature request #8688 (Resolved): Make OriginalSourceBase.cdmSource visible in TaxEditor
now only titleCache (for identifiable entities) or uuid (for cdmBase objects) is shown Katja Luther
11:37 AM Revision 27c58d84 (taxeditor): ref #8688: show only titleCache for IdentifiableEntities
Katja Luther
09:55 AM Revision 5a9bfdf8 (taxeditor): ref #8832: fix deselction of status when changing area in distribution detail element
Katja Luther

01/27/2020

04:49 PM bug #8833: distribution editor: Exception when filtering by taxon
This seems to be a bug in TaxonNodeDaoHibernateImpl.getUuidAndTitleCache() Andreas Kohlbecker
04:40 PM bug #8833 (Duplicate): distribution editor: Exception when filtering by taxon

====
might be fixed by fixing #8834
====
~~~
at javax.servlet.http.HttpServlet.service(HttpServle...
Andreas Kohlbecker
02:31 PM bug #8832 (Resolved): Choosing the area for distribution in details view clears the selected status
When selecting the area for a distribution and the status is already choosen, the status is cleared again. Katja Luther
12:49 PM bug #8830 (Resolved): add missing spaces to statistical value representations
Applied in changeset commit:cdm-dataportal|2dae60cd0f256dbf1c93bfcffaa28d0ca73d4c85. Andreas Kohlbecker
12:48 PM bug #8830 (In Progress): add missing spaces to statistical value representations
Andreas Kohlbecker
09:45 AM bug #8830 (Closed): add missing spaces to statistical value representations
Leerzeichen vor der Einheit und der Klammer:
~~„0 [] m“.~~ corrected after duscussion to: "0 m []"
Andreas Kohlbecker
12:49 PM Revision 2dae60cd (cdm-dataportal): fix #8830 adding missing spaces to statistical value representations
Andreas Kohlbecker
11:54 AM bug #8831: saving name editor throws NPE
Maybe this is because the scientific name is passed as name object not the uuid and loaded on server side. Katja Luther
10:51 AM bug #8831 (Worksforme): saving name editor throws NPE
after editing authors in name editor the following exception appears, this exception
~~~
last remote method : ht...
Katja Luther
11:42 AM bug #8829 (Closed): NullPointerException (NPE) in TaxonNodeService
Your fix is correct.
I added a further null check in the controller method so that the the service responds with t...
Andreas Kohlbecker
10:24 AM bug #8829 (Feedback): NullPointerException (NPE) in TaxonNodeService
The NPE in TaxonNodeServiceImpl.dto has been fixed. Please review and check that controller returns correct http erro... Andreas Müller
09:42 AM bug #8829 (Closed): NullPointerException (NPE) in TaxonNodeService
the request http://api.cybertaxonomy.org:80/euromed/taxonNode/f7a20e6e-c144-4d9e-b307-03a1f3b5305a causes
~~~
...
Andreas Kohlbecker
11:40 AM Revision 24ebd429 (cdmlib): ref #8829 sending http error code in case taxonNode uuid is not found
Andreas Kohlbecker
10:38 AM Revision acffd6b0 (cdmlib): cleanup
Andreas Müller
10:22 AM Revision 4a428ec2 (cdmlib): ref #8829 fix NPE in TaxonNodeServiceImpl.dto
Andreas Müller

01/24/2020

01:23 PM bug #8828: statistical values must not show empty brackets
Andreas Kohlbecker wrote:
> Hallo,
>
>
>
> ggf auch auf das Leerzeichen vor der Einheit (und ggf. der Klamme...
Andreas Kohlbecker
01:23 PM bug #8828: statistical values must not show empty brackets
Hallo,

ggf auch auf das Leerzeichen vor der Einheit (und ggf. der Klammer) achten. Ich habe nicht überprüft, ...
Andreas Kohlbecker
11:23 AM bug #8828 (Closed): statistical values must not show empty brackets
bei den Höhenangaben gab es nun jahrelang bei den Arten, wo Max. und Min. gleich sind, den Standard, dass dann nicht ... Andreas Kohlbecker
11:47 AM bug #8548: ReferenceEditor: Layout problem when opening Reference editor (new journal, new book, new thesis)
Layout in Reference editor is fine, now. If corrected within the production UI the ticket can be closed. Thanks a lot. Wolf-Henning Kusber
11:30 AM bug #8548 (Resolved): ReferenceEditor: Layout problem when opening Reference editor (new journal, new book, new thesis)
Hallo Henning, das Layoutproblem ist gelöst. Bitte teste das einmal im Test Server. Andreas Kohlbecker
11:27 AM bug #6036 (Closed): Problems with deleting type names
Katja Luther
11:12 AM bug #6036: Problems with deleting type names
The problem was that removing a NameTypeDesignation did not delete the NameTypeDesignation this is fixed now. I will ... Katja Luther
11:24 AM Revision 5d429a5f (taxeditor): fix #8749: fix selection in combo with proposalProvider
Katja Luther
11:18 AM Revision 88bf6890 (cdm-vaadin): ref #8548 fixed width for grid cells in reference editor
Andreas Kohlbecker

01/23/2020

03:24 PM Revision 0b79b471 (cdm-vaadin): ref #8706 adapting to new DateHeaderFilter package name
Andreas Kohlbecker
03:23 PM Revision 3db08ffa (cdmlib): ref #8706 moving DateHeaderFilter to cdmlib-remote to make it available for cdm-vaadin
Andreas Kohlbecker
01:53 PM task #8827 (New): Add Chapters to Term, TermTrees, Characters to the platform user documentation
Andreas Kohlbecker
01:36 PM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
removing of a specimen description from a descriptive dataset works in character matrix by selecting the whole row of... Katja Luther
01:16 PM task #8826 (New): DISCUSS: Display of name facts in the portal

[walter:]
Wenn ich mich richtig erinnere, greift das Portal bei der Darstellung von Fakten auf einen Feature Tre...
Andreas Kohlbecker
11:51 AM bug #8784: Deleting a specimen description not possible
please review Katja Luther
11:40 AM bug #8784 (Resolved): Deleting a specimen description not possible
Applied in changeset commit:taxeditor|8cc448f70b9f3752a606b01d147dcd46aa685178. Katja Luther
11:40 AM Revision 8cc448f7 (taxeditor): fix #8784: update factual data view after deleting specimen description
Katja Luther
10:49 AM bug #8825: Name features are shown in menu of factual data view of taxa when no preferences defined
please review. Katja Luther
10:48 AM bug #8825 (Resolved): Name features are shown in menu of factual data view of taxa when no preferences defined
Applied in changeset commit:taxeditor|b19e08c16ecd56b8e2b425975573c07ddd006a6b. Katja Luther
10:44 AM bug #8825 (Closed): Name features are shown in menu of factual data view of taxa when no preferences defined
The right click menu of a taxon factual data set shows taxon and name features when no preferences defined. The name ... Katja Luther
10:48 AM Revision b19e08c1 (taxeditor): fix #8825: fix creation of default taxon feature tree
Katja Luther
10:00 AM bug #8824 (Worksforme): No dirty flag when adding new factual data set
mail AM:
bei mir wird das dirty Flag nicht gesetzt, wenn ich Fact DataSets anlege, egal ob NameFacts oder TaxonFac...
Katja Luther
09:55 AM Revision 1630e9b0 (cdm-vaadin): ref #8706 DateHeaderFilter to add Date headers to all servlet responses
Andreas Kohlbecker
09:39 AM bug #8782 (Resolved): Delete a description included in a CdmSource should not be possible
now deletion is possible only for not referenced descriptions. Katja Luther

01/22/2020

03:09 PM bug #8791 (Resolved): Measurement units are not assigned to quantitative data in matrix
please review. Katja Luther
03:08 PM Revision b0127ea9 (taxeditor): ref #8791: add unit to quantitative data dialog
Katja Luther
03:08 PM Revision 0e8f77ab (cdmlib): ref #8791: add unit to rowWrapperDto when actualise quantitative data
Katja Luther
02:43 PM feature request #8823 (New): Better exception handling in cdm light export
Sometimes excpetions appear because of missing data (e.g. emtpy textual type designations) or wrong sort index. These... Katja Luther
11:46 AM Revision 8ec811cd (cdmlib): ref #1447 improve findIdenticalNames
Andreas Müller
11:43 AM Revision 0a1bd040 (cdmlib-apps): ref #1447 Improve FindIdenticalNames for PESI
Andreas Müller
11:41 AM Revision f39dcda1 (cdmlib-apps): ref #1447, ref #1445 TaxonNode mover for high level taxa
Andreas Müller
11:40 AM Revision b3273569 (cdmlib-apps): ref #1447 implement PESI commandline merger
Andreas Müller
11:37 AM Revision 40bb5f10 (cdmlib-apps): ref #2826 improve IF import to PESI (merge) requirements
Andreas Müller
10:02 AM feature request #8624 (Resolved): Add abbrev title cache to search in bulk editor
Katja Luther
10:01 AM Revision 72836bf3 (taxeditor): ref #8624: call service methods to search for titleCache and abbrevTitleCache
Katja Luther
10:00 AM Revision bdde6137 (cdmlib): ref #8624: add dao and service methods to search for titlecache or abbrev title cache
Katja Luther

01/21/2020

04:56 PM Revision 09e88a38 (cdmlib): ref #1447 reimplement getParentTaxonNodeDtoForRank() to fetch taxa of specific higher ranks
Andreas Müller
04:53 PM Revision 2d726275 (cdmlib): ref #1447 add ancestor id splitter to TreeIndex
Andreas Müller
02:14 PM Revision 820ca4ec (cdmlib): cleanup
Andreas Müller
12:29 PM Revision 4ebd1ae8 (cdmlib): code cleaning
Katja Luther
12:11 PM Revision 5af794eb (cdmlib): cleanup and add CdmRegEx
Andreas Müller
10:55 AM feature request #8749: Add proposalProvider to AbstractComboElement
this ticket was solved for vocabulary combo elemtents in 5.12 and for all other combo elements in 5.13 Katja Luther
10:55 AM feature request #8749 (Resolved): Add proposalProvider to AbstractComboElement
Applied in changeset commit:taxeditor|aae0ca069a639007aa180a7193fa0b510c0499d7. Katja Luther
10:55 AM Revision aae0ca06 (taxeditor): fix #8749: move proposal adapter creation to method in abstractComboDetailElement
Katja Luther
09:32 AM feature request #8822 (Worksforme): Handle exceptions caused by sortinex problems in cdm light export
The exception handling in cdm light should handle sortindex problems with better exception message.
At the moment...
Katja Luther

01/20/2020

04:44 PM Revision f7d60a17 (cdmlib): cleanup
Andreas Müller
04:44 PM Revision 2a055418 (cdmlib): add parameterized HQL API access
Andreas Müller
04:04 PM bug #8821 (New): ConcurrentModificationException during deduplication in bulk editor
Hallo,
etwas Neues – Referenzen Deduplizierung, nach delete Nachfrage Save für vorheriges Delete.
HG
W
~~~
log...
Andreas Müller
03:53 PM bug #8627: NullPointerException (NPE) on saving Specimen Editor (list)
AK, why is this a **copy** of #8626?
Did you mean "related to"?
Andreas Müller
03:50 PM bug #7699 (New): NPE in CdmTransientEntityCacher.getCacheElement()
This exception appears quite often therefore I put it to the current milestone.
We need to find to handle it so t...
Andreas Müller
03:06 PM feature request #8721 (Closed): Use webservice to get all biocase provider listed by gbif
Generally this works. Open issues moved to #8820 Andreas Müller
03:04 PM task #8820 (New): Improve BioCase provider selection list
Copied from #8721
* The access points should be searchable also by the accesspoint title, For the BGBM Herbarium t...
Andreas Müller
02:54 PM Revision caac9df5 (cdmlib): ref #8819: handle cf and aff names in abcd import
Katja Luther
02:54 PM Revision c02db033 (cdmlib): ref #8817: workaround for timeperiods with time 00:00:00 for missing time information
Katja Luther
02:52 PM feature request #8489 (Resolved): Further issues for DB preferences
putting back to 5.10 for review, no changes since then. Follow up ticket for open issues: #8818.
During review put n...
Andreas Müller
02:51 PM feature request #8819 (New): import cf. and aff. names as child taxa of the mentioned genus
Names with cf. or aff. should handled as child taxa of the mentioned genus for example *Amphora cf. minutissima W. Sm... Katja Luther
02:48 PM task #8818 (New): Remaining issues for DB preferences
Copied from #8489
* check wether all (wanted) preferences are available as db preferences
* menu.disableMul...
Andreas Müller
02:25 PM bug #8817 (New): abcd import gathering date contains T00:00:00 when time is missing
The string comes from biocase and the parser is not able to parse it.
This time information is wrong, this should be...
Katja Luther
02:00 PM Revision f96382ee (cdm-server): Merge branch 'release/5.12.0' into develop
jenkins
02:00 PM Revision 9d851ccc (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
01:59 PM Revision ef52afd4 (cdm-server): updating poms for branch'release/5.12.0' with non-snapshot versions
jenkins
01:58 PM Revision 61c84f74 (cdm-webapp): Merge branch 'release/5.12.0' into develop
jenkins
01:58 PM Revision f13c442c (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
01:57 PM Revision 005dbf5d (cdm-webapp): updating poms for branch'release/5.12.0' with non-snapshot versions
jenkins
01:57 PM Revision 2fe20cbb (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.12.0
jenkins
01:54 PM Revision 3f4fc198 (cdm-vaadin): Merge branch 'release/5.12.0' into develop
jenkins
01:54 PM Revision d411f69c (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
01:51 PM Revision 3a0c7116 (cdm-dataportal): Merge branch 'release/5.12.0' into develop
jenkins
01:51 PM Revision 01f28a92 (cdm-dataportal): updating poms for branch'release/5.12.0' with non-snapshot versions
jenkins
01:51 PM Revision 6c1a05e1 (cdm-dataportal): release-preparation: production level css
jenkins
01:51 PM Revision 4b9974cd (taxeditor): Merge branch 'release/5.12.0' into develop
jenkins
01:51 PM Revision 7da9e82a (taxeditor): Merge branch 'release/5.12.0'
jenkins
01:50 PM Revision 6d263bef (cdm-vaadin): updating poms for branch'release/5.12.0' with non-snapshot versions
jenkins
01:50 PM Revision 381041c8 (cdm-vaadin): jenkins bumping cdmlib.version to 5.12.0
jenkins
01:36 PM Revision b47ca96f (cdmlib): Updating develop poms back to pre merge state
jenkins
01:35 PM Revision 5bf0c1e8 (cdmlib): Merge branch 'master' into develop
jenkins
01:35 PM Revision f46e6cd3 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
01:35 PM Revision 8aeb85f2 (cdmlib): Merge branch 'release/5.12.0'
jenkins
01:19 PM Revision 9b054f3a (cdmlib): updating poms for branch'release/5.12.0' with non-snapshot versions
jenkins
01:16 PM Revision 41786238 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.12.0-SNAPSHOT
jenkins
01:16 PM Revision a73e3a0c (cdm-webapp): updating poms for 5.13.0-SNAPSHOT development
jenkins
01:16 PM Revision 34255452 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.13.0-SNAPSHOT
jenkins
01:03 PM Revision a4c74614 (taxeditor): Updated version in pom / project files to taxeditor version : 5.13.0-SNAPSHOT and cdmlib version : 5.13.0-SNAPSHOT
jenkins
01:03 PM Revision abbd53ac (taxeditor): Updated version in pom / project files to taxeditor version : 5.12.0 and cdmlib version : 5.12.0
jenkins
01:02 PM Revision e488b742 (cdm-vaadin): jenkins bumping cdmlib.version to 5.12.0-SNAPSHOT
jenkins
01:02 PM Revision 85bd4946 (cdm-vaadin): updating poms for 5.13.0-SNAPSHOT development
jenkins
01:02 PM Revision 06ece406 (cdm-vaadin): updating poms for 5.12.0 branch with snapshot versions
jenkins
01:02 PM Revision e3d5292e (cdm-vaadin): jenkins bumping cdmlib.version to 5.13.0-SNAPSHOT
jenkins
01:02 PM Revision ca702305 (cdm-dataportal): updating poms for 5.13.0-SNAPSHOT development
jenkins
01:02 PM Revision 6dbb7b01 (cdm-server): updating poms for 5.13.0-SNAPSHOT development
jenkins
12:59 PM Revision eeabb43a (cdmlib): updating poms for 5.13.0-SNAPSHOT development
jenkins
12:55 PM feature request #8677 (Closed): Add distribution aggregation to set subtree menu
>source type selection per source mode
maybe there is a misunderstanding, I meant source **type** . There is still...
Andreas Müller
12:50 PM feature request #8677: Add distribution aggregation to set subtree menu
>use message() for enumeration labels
This seems not yet to be used by "Aggregation mode". I move this to follow u...
Andreas Müller
12:45 PM feature request #8805 (Closed): In distribution editor synoms should be available as concatenated String
Works and ticket can be closed. Maybe in future we can also include ppSyns and MAN and maybe there is even the possib... Andreas Müller
10:48 AM feature request #8805 (Resolved): In distribution editor synoms should be available as concatenated String
Andreas Müller
12:21 PM Revision e756cd24 (cdmlib): ref #8815 adapt return type for uuidAndTitleCache method in taxonNodeService
Andreas Müller
12:17 PM bug #8736 (Closed): LazyInitializationException (LIE) during adding Specimens to Matrix Editor
Katja Luther
12:12 PM bug #8736 (Feedback): LazyInitializationException (LIE) during adding Specimens to Matrix Editor
I guess this can be closed in 5.12 as there is a follow up ticket in 5.13? Andreas Müller
11:45 AM Revision 5bb4d1e3 (cdmlib): preliminary ignore DistributionAggregationTest
Andreas Müller
11:24 AM feature request #6676 (Duplicate): A user with READ access to taxa but WRITE access to factual data cannot update the factual view via the name editor
Katja Luther wrote:
> I think this is fixed with #8810, @AK is this right?
Exactly.
Andreas Kohlbecker
11:07 AM feature request #6676 (Resolved): A user with READ access to taxa but WRITE access to factual data cannot update the factual view via the name editor
I think this is fixed with #8810, @AK is this right? Katja Luther
11:23 AM bug #8816 (Worksforme): NoSuchElementException during adding Specimens to Matrix Editor
Exception during adding Specimens to Matrix Editor
Server side:
~~~
[caryophyllales_spp] 11:42:48,590 INFO [Th...
Katja Luther
11:20 AM Revision f24b885c (cdmlib): cleanup
Andreas Müller
11:20 AM bug #6585 (Rejected): Combo menu items have orange font
I cant reproduce this.
This depends for sure on the linux desktop theme that Patrick was using in this case. Since h...
Andreas Kohlbecker
11:05 AM bug #6585 (Feedback): Combo menu items have orange font
Andreas Müller
11:04 AM bug #6585: Combo menu items have orange font
on windows I can't reproduce this issue, @AK, could you please have a look on linux? Katja Luther
11:19 AM Revision 7de0210e (cdmlib): preliminary ignore StructuredDescriptionAggregationTest
Andreas Müller
11:19 AM Revision df326698 (cdmlib): cleanup
Andreas Müller
11:15 AM Revision b4188660 (taxeditor): ref #8805 fix potential NPE
Andreas Müller
11:09 AM bug #8810 (Closed): In taxeditor parts without permissions should be disabled
Katja Luther
11:02 AM bug #6036: Problems with deleting type names
to have look if this is still an open issue set to Highest. Katja Luther
11:01 AM Revision f59c3f4b (cdmlib): ref #8805 cleanup TaxonDistributionDTO and simplify concatenateSynonyms method
Andreas Müller
10:59 AM feature request #7981: Add configuration UI for matrix description aggregation
Move this to 5.13 Katja Luther
10:48 AM feature request #8749: Add proposalProvider to AbstractComboElement
check which parts are already solved and which still open, therefore move to 5.13 but maybe create a new ticket and m... Katja Luther
10:37 AM bug #8645 (Closed): rename menu item General > Import > "OWL Import" to "Term Tree OWL Import"
fixed Andreas Müller
10:36 AM Revision 2638cb89 (taxeditor): avoid NPE when polling for progressmonitor
Katja Luther
10:08 AM Revision d59d32c3 (taxeditor): avoid NPE when polling for progressmonitor
Katja Luther
09:47 AM Revision 47c1bab5 (cdmlib): ref #8815: add UuidAndTitleCache methods again in taxonnodeservice - continue
Katja Luther

01/18/2020

04:22 PM Revision 4e41b80c (cdmlib-apps): ref #2826 handle verbatim years better
Andreas Müller
04:21 PM Revision a9047fed (cdmlib-apps): ref #2826 handle ined. authors
Andreas Müller
04:20 PM Revision 8fb964f0 (cdmlib-apps): ref #2826 cleanup
Andreas Müller
12:19 PM Revision deed567d (cdmlib-apps): ref #2826 remove not needed cdmTargetClass
Andreas Müller
11:45 AM Revision bb5bac58 (cdmlib-apps): minor, cleanup
Andreas Müller

01/17/2020

09:21 PM feature request #8706: taxeditor error report with timestamps
ready for review Andreas Kohlbecker
09:21 PM feature request #8706 (Resolved): taxeditor error report with timestamps
Applied in changeset commit:taxeditor|6e1d17962e4f23d254da242b13a7e188d69793ca. Andreas Kohlbecker
03:13 PM feature request #8706 (In Progress): taxeditor error report with timestamps
Andreas Kohlbecker
09:21 PM Revision 6e1d1796 (taxeditor): fix #8706 error messages with remonte request time stamps
Andreas Kohlbecker
09:20 PM Revision 30acb146 (cdmlib): ref #8706 DateHeaderFilter to add Date headers to all servelet responses
Andreas Kohlbecker
08:25 PM Revision 046b8cfb (cdmlib): cleanup
Andreas Müller
03:33 PM Revision a6cc90d1 (taxeditor): ref #8706 reporting error time in messages
Andreas Kohlbecker
12:09 PM task #8813 (In Progress): Zen theme base font with better redability
Andreas Kohlbecker
12:08 PM task #8813: Zen theme base font with better redability
Dann gehen wir das nach dem Release an:

1. Umstellen des Portals auf größere Schrift und etwas größeren Zeilena...
Andreas Kohlbecker
12:08 PM task #8813: Zen theme base font with better redability
Hallo Andreas,

danke! Ja, finde ich eine gute Idee, das breiter abzustimmen.

Schöne Grüße,
Norbert
Andreas Kohlbecker
11:29 AM task #8813 (Feedback): Zen theme base font with better redability
Hier nochmal die alte (Droid Sans) und neue Schrift (DejaVu Sans) im Vergleich:
![](Schriftenvergleich-DejaVu-Droi...
Andreas Kohlbecker
09:29 AM task #8813: Zen theme base font with better redability
Hallo Andreas,

herzlichen Dank für Deine hilfreichen Ausführungen; diese Zusammenhänge mit dem jeweiligen Bet...
Andreas Kohlbecker
08:36 AM task #8813 (Resolved): Zen theme base font with better redability
Hallo Norbert,

Bei den Cichorien hatten wir die Verdana eingestellt, diese steht aber nur auf Windowssystemen...
Andreas Kohlbecker
08:35 AM task #8813 (Duplicate): Zen theme base font with better redability
Hallo Andreas,

denkst Du noch daran, wenn Du die Zeit findest, dem Cichorieae-Portal wieder seinen ursprüngli...
Andreas Kohlbecker
09:42 AM Revision 99a988e9 (taxeditor): ref #8805: fix synonym filter
Katja Luther
09:26 AM Revision 75e3aef5 (cdmlib): ref #8815: add UuidAndTitleCache methods again in taxonnodeservice
Katja Luther
09:22 AM bug #8815 (Closed): Clean up TaxonNodeDto and UuidAndTitleCache usage in TaxonNodeService/Dao
In TaxonNodeService and Dao the usage of TaxonNodeDtp and UuidAndTitleCache duplicates some functionality. This shoul... Katja Luther
09:08 AM bug #8814: Clean implementation for permissions with combination of Taxonnode and other permissions
Please always add "related issues" to follow up tickets not only in ticket description. This way it is linked bedirec... Andreas Müller
08:49 AM bug #8814 (New): Clean implementation for permissions with combination of Taxonnode and other permissions
this is a follow up ticket for #8810.
With the actual implementation it is not possible to decide with one call wh...
Katja Luther

01/16/2020

05:11 PM bug #8810 (Feedback): In taxeditor parts without permissions should be disabled
Andreas Müller
03:20 PM bug #8810: In taxeditor parts without permissions should be disabled
this temporary solution works as expected, but we will need a more complete solution.
This ticket can be closed on...
Andreas Kohlbecker
01:53 PM bug #8810 (Resolved): In taxeditor parts without permissions should be disabled
Andreas Müller
12:02 PM bug #8810 (Closed): In taxeditor parts without permissions should be disabled
The user should not be able to edit entities, he/she does not have the permissions for. When checking the permission ... Katja Luther
05:09 PM feature request #8805 (Feedback): In distribution editor synoms should be available as concatenated String
For me no synonyms are shown in the column. I tested on rem_conf_am with classification "Testklass". At least taxon N... Andreas Müller
02:13 PM feature request #8805 (Resolved): In distribution editor synoms should be available as concatenated String
Applied in changeset commit:taxeditor|77172e4955db32cfa9193fbbb03ec81aa7851734. Katja Luther
05:08 PM Revision a64ae084 (cdm-dataportal): ref #6878 switching to DejaVu sans
Andreas Kohlbecker
04:28 PM Revision a2b8e113 (cdm-dataportal): using default font in all page elements
Andreas Kohlbecker
03:52 PM bug #8812 (Resolved): Connection losses in taxeditor HTTP invoker (RemoteAccessException: Could not access HTTP invoker remote service at ...)
A couple of situations exist in which users report problems due to RemoteAccessExceptions ("Could not access HTTP inv... Andreas Kohlbecker
02:12 PM Revision 5915e0b2 (cdmlib): ref #8805: add synonyms to dto for distribution editor
Katja Luther
02:11 PM Revision 77172e49 (taxeditor): fix #8805: add synonym column to distribution editor
Katja Luther
02:01 PM feature request #8749: Add proposalProvider to AbstractComboElement
should we split the ticket and move open issue to 5.13. At least partly it works as far as I remember from vocabulary... Andreas Müller
01:58 PM feature request #8749 (In Progress): Add proposalProvider to AbstractComboElement
need to have a look at this topic again Katja Luther
02:00 PM feature request #6760 (Worksforme): specimen import configuration
I don't what this means exactly. When importing e.g DNA samples of already existing specimen, this is correctly attac... Katja Luther
01:54 PM bug #8745 (Closed): Type designations of synonyms missing on specimen page
This is fixed! Andreas Kohlbecker
01:42 PM bug #8745 (Resolved): Type designations of synonyms missing on specimen page
Andreas Müller
01:48 PM feature request #8299 (Closed): add typification column to scientific name and homotypical group in cdm light
Katja Luther
01:38 PM feature request #8299: add typification column to scientific name and homotypical group in cdm light
I don't think we should move this. It was probably fixed in 5.12 Andreas Müller
01:35 PM bug #8645 (Resolved): rename menu item General > Import > "OWL Import" to "Term Tree OWL Import"
Applied in changeset commit:taxeditor|8e6b3b25d268778b6fd3e90a28fe1c3fa9a62e3b. Katja Luther
01:35 PM Revision 8e6b3b25 (taxeditor): fix #8645: rename OWL Export menu item
Katja Luther
01:33 PM bug #8780 (Closed): Repair sortindex does not work on TermTree index
seems to work, now. Katja Luther
01:10 PM bug #8790 (In Progress): Update measurement units for existing quantitative data missing a unit
Andreas Müller
01:08 PM task #8672: Source handling during (distribution) aggregation
This might be partly implemented in 5.12 already. If fully fixed revert milestone to 5.12 Andreas Müller
01:05 PM feature request #8677 (Resolved): Add distribution aggregation to set subtree menu
Moved open issues to #8811
Review needed for **this** ticket.
Andreas Müller
01:04 PM task #8811 (New): Open issues for "Add distribution aggregation to set subtree menu"
copied from #8677
* disable rank fields in case aggregation should run only on the 1 selected taxon (and not on s...
Andreas Müller
12:55 PM bug #8788 (Feedback): Cloned descriptions do not show up in dataportal anymore
Is this still an open issue? I somehow remember that you have worked on it at the beginning of the year. Andreas Müller
12:23 PM feature request #6812: Improve TaxEditor download site
Issues open here? Andreas Müller
12:19 PM bug #8809 (Closed): CdmLight Export area without level results in NPE
Katja Luther
11:29 AM bug #8809 (Resolved): CdmLight Export area without level results in NPE
Applied in changeset commit:cdmlib|5996b524f4493fa800a843769a45061f497e4b1a. Katja Luther
11:27 AM bug #8809 (Closed): CdmLight Export area without level results in NPE
Areas without a level throwing a NPE. Katja Luther
12:06 PM Revision fe9e440d (taxeditor): ref #8810: check for taxonnode permission and whether the user has taxon node granted authorities
Katja Luther
11:33 AM bug #8737 (Closed): delete taxon included in two classifications deletes taxonname
this works now as expected Andreas Kohlbecker
11:29 AM task #8130: Check if related feature data is cleared when supported facts type is changed
I guess this is not yet fixed. Andreas Müller
11:29 AM Revision 5996b524 (cdmlib): fix #8809: fix NPE for areas without level
Katja Luther
11:24 AM bug #8808 (Closed): Cdm-Light Export fix name identifier export
I won't review as it takes too much time. I guess feedback from WGB should be enough. Andreas Müller
11:19 AM bug #8808 (Resolved): Cdm-Light Export fix name identifier export
Katja Luther
11:17 AM bug #8808 (Closed): Cdm-Light Export fix name identifier export
mail WB:
Hallo Katja,
noch eine Frage zum (derzeitigen) CDM-light output: Kann es sein, dass in die NameIdentifie...
Katja Luther
11:23 AM EDIT Platform Etablierung task #8722 (Closed): Provide Manuals and Dokumentation for the Kurs „Integrated Taxonomy“ WiSe 2019/20
Andreas Kohlbecker
11:23 AM EDIT Platform Etablierung task #8727 (Closed): Test Workshop workflow
Andreas Kohlbecker
11:22 AM EDIT Platform Etablierung task #8704 (Closed): Test specimen import via BioCase and write documentation
Andreas Kohlbecker
11:20 AM feature request #8759 (Resolved): Description aggregation : suppress state present when more details are available
please review Andreas Kohlbecker
11:20 AM Revision 834f548a (cdm-dataportal): ref #8759 conditionally supressing state 'present' in description string representations
Andreas Kohlbecker
11:00 AM Revision 358e0b7f (cdm-dataportal): ref #8759 conditionally supressing state 'present' in description table
Andreas Kohlbecker
10:59 AM Revision dfd71699 (cdm-dataportal): ref #8807 adaptive headers in description table - changing array indexes
Andreas Kohlbecker
10:14 AM bug #8797 (Closed): Navigator tree collapse after moving taxon node
This works as expected now. Andreas Müller
10:12 AM feature request #8807 (Closed): description page: Adapt table header to the nature of description elements
Andreas Kohlbecker
10:12 AM feature request #8807 (Resolved): description page: Adapt table header to the nature of description elements
Applied in changeset commit:cdm-dataportal|0e414cc1ad6b178dd09a57eed2bd47d25d07677a. Andreas Kohlbecker
09:48 AM feature request #8807 (Closed): description page: Adapt table header to the nature of description elements

ich sehe gerade, dass die Tabelle die Überschrift „States“ hat in der 2. Spalte. Das ist nicht ganz richtig, da d...
Andreas Kohlbecker
10:12 AM Revision 0e414cc1 (cdm-dataportal): fix #8807 adaptive headers in description table
Andreas Kohlbecker
09:59 AM bug #8806: Multiple representations problem on saving Desriptive Data Set
If this is reproducable it should be fixed soon. Andreas Müller

01/15/2020

04:55 PM feature request #8759 (In Progress): Description aggregation : suppress state present when more details are available
Andreas Kohlbecker
04:39 PM bug #8733: Descriptive data set: Specimens of a newly added taxon are not listed in Select Specimen dialog of the matrix editor
I updated the ticket description to give some more details on what is did exactly.
Even if there are multiple ways...
Andreas Kohlbecker
04:33 PM bug #8806 (Worksforme): Multiple representations problem on saving Desriptive Data Set
This is reproducible each time:
**preparation*
* connect to caryophyllales_spp (version from 2019-12-06) - avai...
Andreas Kohlbecker
03:18 PM bug #8797 (Resolved): Navigator tree collapse after moving taxon node
now before refresh the navigator remembers the expanded elements and reopens them after refresh Katja Luther
01:48 PM bug #8797 (Feedback): Navigator tree collapse after moving taxon node
For me the problem still exists. No matter if I use d&d or menu or if I move within a classification or to another cl... Andreas Müller
03:17 PM Revision 9ffe52d4 (taxeditor): ref #8797: navigator refreshes and opens the expanded elements after moving
Katja Luther
03:09 PM bug #8511 (Closed): The structure path in the character details view should have a line break
This works as expected Andreas Müller
03:00 PM feature request #8805 (Closed): In distribution editor synoms should be available as concatenated String
For searching for synonym names the distribution editor should have an additional column with the concatenated synonyms. Katja Luther
02:24 PM bug #8804 (Worksforme): taxeditor hangs when creating a new classification
Reproducible with the latest cdm-server and Taxeditor Version: 5.12.0-SNAPSHOT, Build Date: 2020-01-15 **11:50 CET** ... Andreas Kohlbecker
02:06 PM bug #8804: taxeditor hangs when creating a new classification
I can't reproduce it on my local db. And the recursion seems to be something on library side in PermissionEvaluator Katja Luther
01:56 PM bug #8804: taxeditor hangs when creating a new classification
I tested again locally with another DB where it also occurs ....
will test also on the test server, but this will re...
Andreas Kohlbecker
01:40 PM bug #8804: taxeditor hangs when creating a new classification
Can you please test on test/nightly also. This is our reference system for ticket reviews etc. Ofcourse we also need ... Andreas Müller
01:35 PM bug #8804: taxeditor hangs when creating a new classification
Andreas Müller wrote:
> I can't reproduce this. Can you give more information. I created classifications in multiple...
Andreas Kohlbecker
01:17 PM bug #8804: taxeditor hangs when creating a new classification
I can't reproduce this. Can you give more information. I created classifications in multiple DBs and it worked.
Whic...
Andreas Müller
01:08 PM bug #8804: taxeditor hangs when creating a new classification
I put this into the current milestone since it is really an awful regression.
This issue is really critical and mayb...
Andreas Kohlbecker
01:05 PM bug #8804 (Worksforme): taxeditor hangs when creating a new classification

~~~
[caryophyllales_spp] 13:04:59,556 DEBUG [qtp759156157-135][or.sp.we.se.DispatcherServlet] - DispatcherServle...
Andreas Kohlbecker
01:57 PM feature request #8656 (Closed): [DISCUSS] Should only characters be allowed for DescriptiveDataSets/Character Matrix?
This is fixed with the new implementation. Andreas Müller
01:50 PM Revision 57aa10c6 (taxeditor): followup to cleanup of taxonNodeDto/UuidAndTitleCache usage
Katja Luther
01:49 PM Revision 8841d740 (cdmlib): adapted tests for harmonization of taxonnodeDto usage
Katja Luther
01:48 PM Revision b140cc54 (cdmlib): merge ITaxonNodeService
Katja Luther
01:44 PM bug #8801 (Closed): Deselected menu items are not reactivated in navigator
Works as expected now Andreas Müller
01:43 PM Revision 99f73393 (cdmlib): cleanup taxonnodeDto - UuidAndTitleCache<TaxonNode>
Katja Luther
01:27 PM Revision a8284340 (taxeditor): ref #8239: disable details, facts and supplemental data for insufficient rights
Katja Luther
01:21 PM bug #8737: delete taxon included in two classifications deletes taxonname
Please test on test/caryo_spp. #8804 is not valid for at least this DB (at least on my pc). Andreas Müller
01:13 PM bug #8737: delete taxon included in two classifications deletes taxonname
review blocked by #8804 Andreas Kohlbecker
01:19 PM bug #8746 (Rejected): Multiple representations problem on saving Matrix Editor
this MRE did not occur again so far. Andreas Kohlbecker
12:51 PM feature request #7701 (New): Add link to typified name on specimen page of data portal
this is still an open issue:
http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/occurrence/8236...
Andreas Kohlbecker
12:46 PM bug #8745 (Feedback): Type designations of synonyms missing on specimen page
do you have an example link? Andreas Kohlbecker
12:38 PM task #8683 (Closed): TaxonDaoHibernateImpl.countTaxaByName rename parameter authorship authorshipCache
Andreas Kohlbecker
12:36 PM bug #8731 (Closed): BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
obviously works since this import has been used very often in the preparation phase for the workshop and in the works... Andreas Kohlbecker
11:46 AM bug #8736 (In Progress): LazyInitializationException (LIE) during adding Specimens to Matrix Editor
The LIE is apparently fixed but I received another exception:
Server side:
~~~
[caryophyllales_spp] 11:42:48,5...
Andreas Kohlbecker
11:13 AM feature request #8803 (Resolved): Add "per mm²" to measurement units
Applied in changeset commit:cdmlib|a65a935cd5279773ac1d32f98e4be04ecd5ea065. Andreas Müller
11:08 AM feature request #8803 (Closed): Add "per mm²" to measurement units
This is needed for some Cactaceae characters Andreas Müller
11:12 AM Revision 6ad1062d (cdmlib): cleanup
Andreas Müller
11:12 AM Revision a65a935c (cdmlib): fix #8803 add per mm² to MeasurementUnit
Andreas Müller
11:12 AM Revision 5675e611 (cdmlib): fix getPage() for deduplication
Andreas Müller
11:12 AM Revision 30df4b0a (cdmlib): cleanup
Andreas Müller

01/14/2020

04:27 PM Revision 207beb84 (cdmlib-apps): cleanup
Andreas Müller
04:23 PM Revision bddc23ae (cdmlib-apps): minor changes to PESI Activators
Andreas Müller
04:15 PM Revision 567f10b2 (cdmlib-apps): latest changes to GreeceImageActivator
Andreas Müller
04:13 PM Revision 3f131c46 (cdmlib-apps): ref #1447 handle null and ERMS pseudo taxa and some minor changes
Andreas Müller
03:56 PM Revision cc5e8c6e (cdmlib): fixing bugs in SwaggerIT and StaticSwaggerApiDoc
Andreas Kohlbecker
03:53 PM Revision a3f91025 (cdmlib): fixing bug in descriptions/elementsByType/{classSimpleName} - marker filter was ignored
Andreas Kohlbecker
03:21 PM bug #8684 (Closed): ITaxonService.findTaxaByName misses initStrategy Parameter
Andreas Kohlbecker
03:21 PM bug #8684: ITaxonService.findTaxaByName misses initStrategy Parameter
also tested on t edit-test and confirmed that the service is working now
~~~
http http://test.e-taxonomy.eu/cdmse...
Andreas Kohlbecker
01:56 PM bug #8684 (Resolved): ITaxonService.findTaxaByName misses initStrategy Parameter
the webservice is now working, tested with:
~~~
http :8081/portal/taxon/doFindByNameParts.json genusOrUninomial=...
Andreas Kohlbecker
02:06 PM Revision 8867b63b (cdm-dataportal): ref #8771 fixing bug in statistical value processing
Andreas Kohlbecker
01:41 PM Revision 76b9084e (cdmlib): ref #8684 fixing bean collection initialization in TaxonDaoHibernateImpl.findTaxaByName
Andreas Kohlbecker
11:31 AM feature request #8802 (In Progress): Implement flowering period for Flora of Cyprus
Andreas Müller
11:31 AM feature request #8802 (Closed): Implement flowering period for Flora of Cyprus
(was "Blütezeiten")
This includes a new DescriptionElement subclass "TermporalData" and a new TimePeriod subclass ...
Andreas Müller

01/13/2020

05:32 PM bug #8684 (In Progress): ITaxonService.findTaxaByName misses initStrategy Parameter
testing the web service (locally with the caryophlalles_spp database):
~~~
http :8081/portal/taxon/doFindByNamePa...
Andreas Kohlbecker
05:11 PM bug #8719 (Closed): installation profile 'CDM_Portal' causes Integrity constraint violation: 1048 Column 'pages' cannot be null
as this problem did no longer occur we can close this issue. Andreas Kohlbecker
05:10 PM task #8716 (In Progress): Configure taxeditor to run with GTK2 in linux
Andreas Kohlbecker
05:07 PM feature request #8686 (Closed): Support CdmLink sources in bibliography
fragment removed from links - closing ticket. Andreas Kohlbecker
05:06 PM Revision cbe9b085 (cdm-dataportal): ref #8686 removing fragment from link
Andreas Kohlbecker
04:56 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
By now we are having quite good solution, and I suggest to close this issue. Please move further requirements and wis... Andreas Kohlbecker
04:16 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > 3 Verbesserungsvorschläge:
> >
> Derzeit ist u.A. vor al...
Andreas Kohlbecker
04:06 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
Andreas Müller wrote:
> 3 Verbesserungsvorschläge:
>
> * Avg, StdAbw und Var nur ausblenden bei min=max, wenn Avg...
Andreas Kohlbecker
04:54 PM Revision 8726bde3 (cdm-dataportal): ref #8771 documenting phpUnit test execution
Andreas Kohlbecker
04:49 PM Revision dd80884c (cdm-dataportal): ref #8771 finetuning of statistical values display and more tests
Andreas Kohlbecker
04:35 PM Revision 6b99e174 (cdmlib-apps): ref #1447 underscore for parent diff file
Andreas Müller
03:11 PM Revision 0e1b6929 (cdm-dataportal): ignoring all target folders
Andreas Kohlbecker
03:11 PM Revision fd411b34 (cdmlib-apps): ref #1447 remove unncessary casts and cleanup
Andreas Müller
03:11 PM Revision 145a5e49 (cdm-dataportal): removing modules/cdm_dataportal/target/
Andreas Kohlbecker
03:07 PM Revision c3fb3bba (cdm-dataportal): ref #8771 more test cases
Andreas Kohlbecker
02:48 PM Revision a163fed9 (cdmlib-apps): ref #1447 add utf8 to writer
Andreas Müller
02:20 PM Revision 29d3d2ce (cdm-dataportal): ref #8771 phpunit improving test suite setup
Andreas Kohlbecker
02:18 PM Revision 7c808239 (cdm-dataportal): ref #8771 phpunit improving test suite setup
Andreas Kohlbecker
02:05 PM Revision 778b241c (cdm-dataportal): ref #8771 phpunit improving test suite setup
Andreas Kohlbecker
01:52 PM Revision 458948d0 (cdm-dataportal): ref #8771 phpunit improving test suite setup
Andreas Kohlbecker
01:22 PM Revision 2e07d351 (cdm-dataportal): ref #8771 phpunit logging in junit xml format - renaming logfile
Andreas Kohlbecker
01:08 PM Revision b2ecf616 (cdm-dataportal): ref #8771 phpunit logging in junit xml format
Andreas Kohlbecker
08:23 AM Revision 76c0847f (cdm-dataportal): ref #8771 downgrading to phpUnit 5 for backwards compatibility with php5
Andreas Kohlbecker

01/12/2020

01:05 AM Revision ab6f97de (cdmlib-apps): cleanup
Andreas Müller
01:02 AM Revision 874a38f5 (cdmlib-apps): ref #8643 fix FaEu destination 2
Andreas Müller
 

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