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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.pilotOutputHtml;
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import java.io.FileWriter;
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import java.io.IOException;
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import java.util.Iterator;
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import java.util.Set;
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import javax.xml.bind.Marshaller;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.io.jaxb.CdmMarshallerListener;
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import eu.etaxonomy.cdm.io.sdd.out.SDDDataSet;
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import eu.etaxonomy.cdm.model.common.Representation;
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import eu.etaxonomy.cdm.model.description.CategoricalData;
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import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.MeasurementUnit;
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import eu.etaxonomy.cdm.model.description.QuantitativeData;
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import eu.etaxonomy.cdm.model.description.StateData;
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import eu.etaxonomy.cdm.model.description.StatisticalMeasurementValue;
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import eu.etaxonomy.cdm.model.description.TaxonDescription;
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import eu.etaxonomy.cdm.model.description.TextData;
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import eu.etaxonomy.cdm.model.name.TaxonName;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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/**
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* Writes the SDD XML file.
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*
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* @author h.fradin
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* @created 10.12.2008
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* @version 1.0
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*/
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public class PilotOutputDocumentBuilder {
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private SDDDataSet cdmSource;
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private static final Logger logger = Logger.getLogger(PilotOutputDocumentBuilder.class);
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// private SDDContext sddContext;
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public PilotOutputDocumentBuilder() throws IOException {
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}
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public void marshal(SDDDataSet cdmSource, String sddDestination) throws IOException {
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this.cdmSource = cdmSource;
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Marshaller marshaller;
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CdmMarshallerListener marshallerListener = new CdmMarshallerListener();
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logger.info("Start marshalling");
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writeCDMtoHTML(sddDestination);
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}
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/**Write the HTML document.
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* @param base
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* @throws IOException
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*/
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public void writeCDMtoHTML(String sddDestination) throws IOException {
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FileWriter writer = null;
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String texte = "<!DOCTYPE HTML PUBLIC \"-//W3C//DTD HTML 4.01 Transitional//EN\">\n<html>\n<head>\n";
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texte += "<title>Taxon descriptions included in the CDM base</title>\n";
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texte += "</head>\n";
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texte += "<body bgcolor=\"#FFFFE8\" topmargin=\"5\">\n";
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texte += "<h1 align=\"center\">Taxon descriptions included in the CDM base</h1>\n";
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for (Iterator<? extends TaxonBase> tb = this.cdmSource.getTaxa().iterator() ; tb.hasNext() ;){
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Taxon taxon = (Taxon) tb.next();
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texte = writeTaxonDescriptionsToHTML(taxon, texte);
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}
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texte += "</body>\n</html>\n";
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try{
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writer = new FileWriter(sddDestination, true);
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writer.write(texte,0,texte.length());
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}catch(IOException ex){
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ex.printStackTrace();
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}finally{
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if(writer != null){
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writer.close();
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}
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}
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}
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/**Write the HTML part for one taxon.
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* @param base
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* @throws IOException
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*/
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public String writeTaxonDescriptionsToHTML(Taxon taxon, String texte) throws IOException {
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TaxonName taxonName = taxon.getName();
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String name = taxonName.getTitleCache();
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Set<TaxonDescription> descriptions = taxon.getDescriptions();
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for (Iterator<TaxonDescription> td = descriptions.iterator() ; td.hasNext() ;){
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TaxonDescription description = td.next();
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if (!description.getTitleCache().equals("")) {
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texte += "<h3>Name of description: " + description.getTitleCache() + "</h3>\n";
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} else {
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texte += "No title for this description.<br/>\n";
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}
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if (!name.equals("")) {
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texte += "<h3>Taxon name: " + name + "</h3>\n";
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} else {
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texte += "No taxon name attached to this description.<br/><br/>\n";
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}
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texte += "<ul type=\"circle\">\n";
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for (Iterator<? extends DescriptionElementBase> dep = description.getElements().iterator() ; dep.hasNext() ;){
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DescriptionElementBase descriptionElement = dep.next();
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if (descriptionElement instanceof CategoricalData) {
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CategoricalData categorical = (CategoricalData) descriptionElement;
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Feature feature = categorical.getFeature();
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Representation representation = (Representation) feature.getRepresentations().toArray()[0];
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texte += "<li>Categorical data associated with feature: <b>" + representation.getLabel() + "</b><br/>\nStates: ";
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for (Iterator<? extends StateData> sd = categorical.getStateData().iterator() ; sd.hasNext() ;){
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StateData stateData = sd.next();
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texte += ((Representation) stateData.getState().getRepresentations().toArray()[0]).getLabel();
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if (sd.hasNext()) {
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texte += "; ";
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} else {
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texte += ".<br/>\n";
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}
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}
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texte += "<br/>\n";
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}
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if (descriptionElement instanceof QuantitativeData) {
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QuantitativeData quantitative = (QuantitativeData) descriptionElement;
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Feature feature = quantitative.getFeature();
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Representation representation = (Representation) feature.getRepresentations().toArray()[0];
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texte += "<li>Quantitative data associated with feature: <b>" + representation.getLabel() + "</b><br/>\n";
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MeasurementUnit mu = quantitative.getUnit();
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String unit = ((Representation) mu.getRepresentations().toArray()[0]).getLabel();
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if (!unit.equals("")) {
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texte += "Measurement unit: " + unit + "<br/>\n";
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}
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for (Iterator<? extends StatisticalMeasurementValue> smv = quantitative.getStatisticalValues().iterator() ; smv.hasNext() ;){
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StatisticalMeasurementValue statistical = smv.next();
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texte += ((Representation) statistical.getType().getRepresentations().toArray()[0]).getLabel();
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texte += " = " + statistical.getValue() + "<br/>\n";
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}
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texte += "<br/>\n";
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}
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if (descriptionElement instanceof TextData) {
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TextData text = (TextData) descriptionElement;
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Feature feature = text.getFeature();
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Representation representation = (Representation) feature.getRepresentations().toArray()[0];
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texte += "<li>Text data associated with feature: <b>" + representation.getLabel() + "</b><br/>\n";
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texte += "Text: " + text.getMultilanguageText().get((text.getMultilanguageText().keySet().toArray()[0])).getText() + "<br/>\n";
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texte += "<br/>\n";
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}
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}
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texte += "</ul>\n";
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}
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return texte;
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}
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}
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