Revision 9dc896c9
Added by Andreas Müller almost 7 years ago
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/DbImportNameTypeDesignationMapper.java | ||
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/** |
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* Copyright (C) 2007 EDIT |
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* European Distributed Institute of Taxonomy
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* European Distributed Institute of Taxonomy |
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* http://www.e-taxonomy.eu |
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*
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* |
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* The contents of this file are subject to the Mozilla Public License Version 1.1 |
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* See LICENSE.TXT at the top of this package for the full license terms. |
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*/ |
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import eu.etaxonomy.cdm.io.common.DbImportStateBase; |
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import eu.etaxonomy.cdm.model.common.CdmBase; |
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import eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus; |
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import eu.etaxonomy.cdm.model.name.TaxonNameBase;
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import eu.etaxonomy.cdm.model.name.TaxonName; |
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import eu.etaxonomy.cdm.model.reference.Reference; |
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/** |
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*/ |
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public class DbImportNameTypeDesignationMapper<STATE extends DbImportStateBase<?,?>, T extends IDbImportTransformed> extends DbImportMultiAttributeMapperBase<CdmBase, STATE> {
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private static final Logger logger = Logger.getLogger(DbImportNameTypeDesignationMapper.class); |
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//******************************** FACTORY METHOD ***************************************************/ |
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public static DbImportNameTypeDesignationMapper<?,?> NewInstance(String dbFromAttribute, String dbToAttribute, String relatedObjectNamespace, String desigStatusAttribute){
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return new DbImportNameTypeDesignationMapper(dbFromAttribute, dbToAttribute, null, relatedObjectNamespace, desigStatusAttribute); |
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} |
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//******************************* ATTRIBUTES ***************************************/ |
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private String fromAttribute; |
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private String toAttribute; |
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private String citationAttribute; |
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private String microCitationAttribute; |
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private String designationStatusAttribute; |
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//********************************* CONSTRUCTOR ****************************************/ |
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/** |
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* @param relatedObjectNamespace
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* @param relatedObjectNamespace |
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* @param mappingImport |
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*/ |
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protected DbImportNameTypeDesignationMapper(String fromAttribute, String toAttribute, NameTypeDesignationStatus designationStatus, String relatedObjectNamespace, String desigStatusAttribute) {
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} |
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//************************************ METHODS *******************************************/ |
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/* (non-Javadoc) |
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* @see eu.etaxonomy.cdm.io.common.mapping.IDbImportMapper#invoke(java.sql.ResultSet, eu.etaxonomy.cdm.model.common.CdmBase) |
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*/ |
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public CdmBase invoke(ResultSet rs, CdmBase cdmBase) throws SQLException {
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@Override |
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public CdmBase invoke(ResultSet rs, CdmBase cdmBase) throws SQLException {
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STATE state = importMapperHelper.getState(); |
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CdmImportBase currentImport = state.getCurrentIO(); |
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if (currentImport instanceof ICheckIgnoreMapper){
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return cdmBase; |
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} |
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} |
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CdmBase fromObject = getRelatedObject(rs, fromAttribute); |
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CdmBase toObject = getRelatedObject(rs, toAttribute); |
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//TODO cast |
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if (citationAttribute != null){
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microCitation = rs.getString(microCitationAttribute); |
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} |
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Object designationStatusValue = null; |
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if (citationAttribute != null){
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designationStatusValue = rs.getObject(designationStatusAttribute); |
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logger.warn(warning); |
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return cdmBase; |
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} |
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TaxonNameBase typifiedName = checkTaxonNameBaseType(fromObject);
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TaxonName typifiedName = checkTaxonNameType(fromObject);
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if (toObject == null){
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String warning = "Species name could not be found. Name type not added to higher rank name"; |
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logger.warn(warning); |
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return cdmBase; |
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} |
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TaxonNameBase typeName = checkTaxonNameBaseType(toObject);
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TaxonName typeName = checkTaxonNameType(toObject);
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boolean addToAllHomotypicNames = false; //TODO check if this is correct |
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String originalNameString = null; //TODO what is this |
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NameTypeDesignationStatus status = this.designationStatus; |
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if (designationStatusValue != null){
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//FIXME this needs work in generics to remove casts. Or find an other solution |
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} |
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} |
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typifiedName.addNameTypeDesignation(typeName, citation, microCitation, originalNameString, status, addToAllHomotypicNames); |
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return typifiedName; |
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} |
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/** |
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* //TODO copied from DbImportObjectMapper. Maybe these can be merged again in future |
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* @param rs |
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} |
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return result; |
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} |
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/** |
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* Checks if cdmBase is of type Taxon
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* Checks if cdmBase is of type Taxon |
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* @param fromObject |
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*/ |
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private TaxonNameBase checkTaxonNameBaseType(CdmBase cdmBase) {
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if (! cdmBase.isInstanceOf(TaxonNameBase.class)){
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String warning = "Type name or typifier name is not of type TaxonNameBase but " + cdmBase.getClass().getName();
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private TaxonName checkTaxonNameType(CdmBase cdmBase) {
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if (! cdmBase.isInstanceOf(TaxonName.class)){
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String warning = "Type name or typifier name is not of type TaxonName but " + cdmBase.getClass().getName(); |
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logger.warn(warning); |
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throw new IllegalArgumentException(warning); |
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} |
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return (cdmBase.deproxy(cdmBase, TaxonNameBase.class));
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return (cdmBase.deproxy(cdmBase, TaxonName.class)); |
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} |
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Also available in: Unified diff
fix #6368 rename table and class TaxonNameBase