Revision 9dc896c9
Added by Andreas Müller almost 7 years ago
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/in/TcsXmlTaxonNameImport.java | ||
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| 30 | 30 |
import eu.etaxonomy.cdm.model.name.INonViralName; |
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode; |
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import eu.etaxonomy.cdm.model.name.Rank; |
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import eu.etaxonomy.cdm.model.name.TaxonNameBase;
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import eu.etaxonomy.cdm.model.name.TaxonName; |
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import eu.etaxonomy.cdm.model.name.TaxonNameFactory; |
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import eu.etaxonomy.cdm.model.reference.Reference; |
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory; |
| ... | ... | |
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|
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logger.info("start make TaxonNames ...");
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MapWrapper<Person> authorMap = (MapWrapper<Person>)state.getStore(ICdmIO.TEAM_STORE); |
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MapWrapper<TaxonNameBase> taxonNameMap = (MapWrapper<TaxonNameBase>)state.getStore(ICdmIO.TAXONNAME_STORE);
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MapWrapper<TaxonName> taxonNameMap = (MapWrapper<TaxonName>)state.getStore(ICdmIO.TAXONNAME_STORE);
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MapWrapper<Reference> referenceMap = (MapWrapper<Reference>)state.getStore(ICdmIO.REFERENCE_STORE); |
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ResultWrapper<Boolean> success = ResultWrapper.NewInstance(true); |
| ... | ... | |
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try {
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TaxonNameBase<?,?> nameBase;
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TaxonName nameBase; |
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NomenclaturalCode nomCode = TcsXmlTransformer.nomCodeString2NomCode(strNomenclaturalCode); |
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if (nomCode != null){
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nameBase = nomCode.getNewTaxonNameInstance(rank); |
| ... | ... | |
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taxonNameMap.put(removeVersionOfRef(strId), handleTaxonNameElement(elTaxonName, success, state)); |
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} |
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logger.info(i + " names handled"); |
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Collection<? extends TaxonNameBase> col = taxonNameMap.objects();
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Collection<? extends TaxonName> col = taxonNameMap.objects(); |
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getNameService().save((Collection)col); |
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|
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logger.info("end makeTaxonNames ...");
|
| ... | ... | |
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return result; |
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} |
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public TaxonNameBase handleTaxonNameElement(Element elTaxonName, ResultWrapper<Boolean> success, TcsXmlImportState state){
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public TaxonName handleTaxonNameElement(Element elTaxonName, ResultWrapper<Boolean> success, TcsXmlImportState state){
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Namespace tcsNamespace = state.getConfig().getTcsXmlNamespace(); |
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MapWrapper<Person> authorMap = (MapWrapper<Person>)state.getStore(ICdmIO.TEAM_STORE); |
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MapWrapper<TaxonNameBase> taxonNameMap = (MapWrapper<TaxonNameBase>)state.getStore(ICdmIO.TAXONNAME_STORE);
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MapWrapper<TaxonName> taxonNameMap = (MapWrapper<TaxonName>)state.getStore(ICdmIO.TAXONNAME_STORE);
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MapWrapper<Reference> referenceMap = (MapWrapper<Reference>)state.getStore(ICdmIO.REFERENCE_STORE); |
| 265 | 265 |
|
| 266 | 266 |
|
| ... | ... | |
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try {
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TaxonNameBase<?,?> nameBase;
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TaxonName nameBase; |
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NomenclaturalCode nomCode = TcsXmlTransformer.nomCodeString2NomCode(strNomenclaturalCode); |
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if (nomCode != null){
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nameBase = nomCode.getNewTaxonNameInstance(rank); |
| ... | ... | |
| 364 | 364 |
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private void makeCanonicalAuthorship(TaxonNameBase name, Element elCanonicalAuthorship, MapWrapper<Person> authorMap, ResultWrapper<Boolean> success){
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private void makeCanonicalAuthorship(TaxonName name, Element elCanonicalAuthorship, MapWrapper<Person> authorMap, ResultWrapper<Boolean> success){
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if (elCanonicalAuthorship != null){
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Namespace ns = elCanonicalAuthorship.getNamespace(); |
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|
| ... | ... | |
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} |
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} |
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private void makeMicroReference(TaxonNameBase name, Element elMicroReference, ResultWrapper<Boolean> success){
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private void makeMicroReference(TaxonName name, Element elMicroReference, ResultWrapper<Boolean> success){
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if (elMicroReference != null){
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String microReference = elMicroReference.getTextNormalize(); |
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name.setNomenclaturalMicroReference(microReference); |
| 418 | 418 |
} |
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} |
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private void makeCanonicalName(TaxonNameBase name, Element elCanonicalName, MapWrapper<TaxonNameBase> taxonNameMap, ResultWrapper<Boolean> success){
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private void makeCanonicalName(TaxonName name, Element elCanonicalName, MapWrapper<TaxonName> taxonNameMap, ResultWrapper<Boolean> success){
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boolean cacheProtected = false; |
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if (elCanonicalName == null){
|
| ... | ... | |
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//logger.warn("'makeCultivarName' Not yet implemented");
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} |
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private void makeGenusReferenceType(TaxonNameBase name, Element elGenus, MapWrapper<TaxonNameBase> taxonNameMap, ResultWrapper<Boolean> success){
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private void makeGenusReferenceType(TaxonName name, Element elGenus, MapWrapper<TaxonName> taxonNameMap, ResultWrapper<Boolean> success){
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if(name.isNonViral()){
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INonViralName nonViralName = name; |
| 528 | 528 |
if (elGenus != null){
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INonViralName genusReferenceName; |
| 530 | 530 |
//TODO code |
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Class<? extends TaxonNameBase> clazz = TaxonNameBase.class;
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Class<? extends TaxonName> clazz = TaxonName.class;
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genusReferenceName = makeReferenceType(elGenus, clazz, taxonNameMap, success); |
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genusReferenceName.setNameType(NomenclaturalCode.NonViral); |
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//Genus is stored either in Genus part (if ref) or in titleCache (if plain text) |
| ... | ... | |
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|
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} |
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private void makePublishedIn(TaxonNameBase name, Element elPublishedIn, MapWrapper<Reference> referenceMap, ResultWrapper<Boolean> success){
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private void makePublishedIn(TaxonName name, Element elPublishedIn, MapWrapper<Reference> referenceMap, ResultWrapper<Boolean> success){
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if (elPublishedIn != null && name != null){
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Class<Reference> clazz = Reference.class; |
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Reference ref = makeReferenceType(elPublishedIn, clazz, referenceMap, success); |
| ... | ... | |
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} |
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} |
| 563 | 563 |
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private void makeYear(TaxonNameBase name, Element elYear, ResultWrapper<Boolean> success){
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private void makeYear(TaxonName name, Element elYear, ResultWrapper<Boolean> success){
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if (elYear != null){
|
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String year = elYear.getTextNormalize(); |
| 567 | 567 |
if (year != null){
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Also available in: Unified diff
fix #6368 rename table and class TaxonNameBase