Revision 9dc896c9
Added by Andreas Müller almost 7 years ago
| cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/NameServiceImplTest.java | ||
|---|---|---|
| 36 | 36 |
import eu.etaxonomy.cdm.model.name.Rank; |
| 37 | 37 |
import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation; |
| 38 | 38 |
import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus; |
| 39 |
import eu.etaxonomy.cdm.model.name.TaxonNameBase;
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|
| 39 |
import eu.etaxonomy.cdm.model.name.TaxonName; |
|
| 40 | 40 |
import eu.etaxonomy.cdm.model.name.TaxonNameFactory; |
| 41 | 41 |
import eu.etaxonomy.cdm.model.name.TypeDesignationBase; |
| 42 | 42 |
import eu.etaxonomy.cdm.model.occurrence.DerivedUnit; |
| ... | ... | |
| 115 | 115 |
*/ |
| 116 | 116 |
@Test |
| 117 | 117 |
@DataSet(loadStrategy=CleanSweepInsertLoadStrategy.class) |
| 118 |
public void testDeleteTaxonNameBaseWithNameRelations() {
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| 118 |
public void testDeleteTaxonNameWithNameRelations() {
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|
| 119 | 119 |
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| 120 |
final String[] tableNames = new String[]{"USERACCOUNT", "TaxonNameBase","NameRelationship","HybridRelationship","DescriptionBase","NomenclaturalStatus","TaxonBase","SpecimenOrObservationBase","OriginalSourceBase","DescriptionElementBase"};
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| 120 |
final String[] tableNames = new String[]{"USERACCOUNT", "TaxonName","NameRelationship","HybridRelationship","DescriptionBase","NomenclaturalStatus","TaxonBase","SpecimenOrObservationBase","OriginalSourceBase","DescriptionElementBase"};
|
|
| 121 | 121 |
// printDataSetWithNull(System.err, true, null); |
| 122 | 122 |
|
| 123 |
TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
|
|
| 123 |
TaxonName<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
| 124 | 124 |
name1.setTitleCache("Name1", true);
|
| 125 |
TaxonNameBase<?,?> nameWithBasionym = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
|
|
| 125 |
TaxonName<?,?> nameWithBasionym = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
| 126 | 126 |
nameWithBasionym.setTitleCache("nameWithBasionym", true);
|
| 127 | 127 |
|
| 128 | 128 |
NameRelationshipType nameRelType = (NameRelationshipType)termService.find(NameRelationshipType.BASIONYM().getUuid()); |
| ... | ... | |
| 162 | 162 |
|
| 163 | 163 |
@Test |
| 164 | 164 |
@DataSet(loadStrategy=CleanSweepInsertLoadStrategy.class) |
| 165 |
public void testDeleteTaxonNameBaseConfiguratorWithNameRelations() {
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| 166 |
final String[] tableNames = new String[]{"TaxonNameBase","NameRelationship","HybridRelationship"};
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public void testDeleteTaxonNameConfiguratorWithNameRelations() {
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final String[] tableNames = new String[]{"TaxonName","NameRelationship","HybridRelationship"};
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| 167 | 167 |
|
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// printDataSet(System.err, new String[]{"TaxonNameBase","NameRelationship","HybridRelationship","DescriptionBase","NomenclaturalStatus","TaxonBase","SpecimenOrObservationBase","OriginalSourceBase",
|
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// printDataSet(System.err, new String[]{"TaxonName","NameRelationship","HybridRelationship","DescriptionBase","NomenclaturalStatus","TaxonBase","SpecimenOrObservationBase","OriginalSourceBase",
|
|
| 169 | 169 |
// "DescriptionElementBase", |
| 170 | 170 |
// "AGENTBASE", "USERACCOUNT", "PERMISSIONGROUP", "USERACCOUNT_PERMISSIONGROUP", "USERACCOUNT_GRANTEDAUTHORITYIMPL", "GRANTEDAUTHORITYIMPL"}); |
| 171 | 171 |
|
| 172 |
TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
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TaxonName name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
| 173 | 173 |
name1.setTitleCache("Name1", true);
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TaxonNameBase<?,?> nameWithBasionym = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
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TaxonName nameWithBasionym = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
| 175 | 175 |
nameWithBasionym.setTitleCache("nameWithBasionym", true);
|
| 176 | 176 |
|
| 177 | 177 |
NameRelationshipType nameRelType = (NameRelationshipType)termService.find(NameRelationshipType.BASIONYM().getUuid()); |
| ... | ... | |
| 205 | 205 |
* Test method for {@link eu.etaxonomy.cdm.api.service.NameServiceImpl#generateTitleCache()}.
|
| 206 | 206 |
*/ |
| 207 | 207 |
@Test |
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public void testDeleteTaxonNameBaseConfiguratorWithNameRelationsAll() {
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final String[] tableNames = new String[]{"TaxonNameBase","NameRelationship","HybridRelationship"};
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public void testDeleteTaxonNameConfiguratorWithNameRelationsAll() {
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final String[] tableNames = new String[]{"TaxonName","NameRelationship","HybridRelationship"};
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TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
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TaxonName name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
| 212 | 212 |
name1.setTitleCache("Name1", true);
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TaxonNameBase<?,?> nameWithBasionym = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
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TaxonName nameWithBasionym = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
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nameWithBasionym.setTitleCache("nameWithBasionym", true);
|
| 215 | 215 |
|
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NameRelationshipType nameRelType = (NameRelationshipType)termService.find(NameRelationshipType.BASIONYM().getUuid()); |
| ... | ... | |
| 244 | 244 |
* Test method for {@link eu.etaxonomy.cdm.api.service.NameServiceImpl#generateTitleCache()}.
|
| 245 | 245 |
*/ |
| 246 | 246 |
@Test |
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public void testDeleteTaxonNameBaseConfiguratorWithHasBasionym() {
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final String[] tableNames = new String[]{"TaxonNameBase","NameRelationship","HybridRelationship"};
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public void testDeleteTaxonNameConfiguratorWithHasBasionym() {
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final String[] tableNames = new String[]{"TaxonName","NameRelationship","HybridRelationship"};
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TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
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TaxonName name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
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name1.setTitleCache("Name1", true);
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TaxonNameBase<?,?> basionym = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
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TaxonName basionym = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
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basionym.setTitleCache("basionym", true);
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| 254 | 254 |
|
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NameRelationshipType nameRelType = (NameRelationshipType)termService.find(NameRelationshipType.BASIONYM().getUuid()); |
| ... | ... | |
| 289 | 289 |
*/ |
| 290 | 290 |
@Test |
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// @Ignore //currently does not run in suite |
| 292 |
public void testDeleteTaxonNameBaseWithHybridRelations() {
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final String[] tableNames = new String[]{"TaxonNameBase","NameRelationship","HybridRelationship"};
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public void testDeleteTaxonNameWithHybridRelations() {
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final String[] tableNames = new String[]{"TaxonName","NameRelationship","HybridRelationship"};
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TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
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TaxonName name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
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name1.setTitleCache("Name1", true);
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TaxonNameBase<?,?> parent = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
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TaxonName parent = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
| 298 | 298 |
parent.setTitleCache("parent", true);
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TaxonNameBase<?,?> child = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
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TaxonName child = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
| 300 | 300 |
child.setTitleCache("child", true);
|
| 301 | 301 |
|
| 302 | 302 |
HybridRelationshipType relType = (HybridRelationshipType)termService.find(HybridRelationshipType.FIRST_PARENT().getUuid()); |
| ... | ... | |
| 349 | 349 |
*/ |
| 350 | 350 |
@Test |
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@DataSet(loadStrategy=CleanSweepInsertLoadStrategy.class) |
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public void testDeleteTaxonNameBaseInConcept() {
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final String[] tableNames = new String[]{"TaxonNameBase","TaxonBase"};
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public void testDeleteTaxonNameInConcept() {
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final String[] tableNames = new String[]{"TaxonName","TaxonBase"};
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TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
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TaxonName name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
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name1.setTitleCache("Name1", true);
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TaxonNameBase<?,?> basionym = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
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TaxonName basionym = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
| 358 | 358 |
basionym.setTitleCache("basionym", true);
|
| 359 | 359 |
|
| 360 | 360 |
Taxon taxon = Taxon.NewInstance(name1, null); |
| ... | ... | |
| 368 | 368 |
if (result.isOk()){
|
| 369 | 369 |
Assert.fail("Delete should throw an error as long as name is used in a concept.");
|
| 370 | 370 |
} |
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TaxonNameBase<?,?> nameBase =nameService.find(name1.getUuid());
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TaxonName nameBase =nameService.find(name1.getUuid()); |
|
| 372 | 372 |
Assert.assertNotNull("Name should still be in database",nameBase);
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| 373 | 373 |
TaxonBase<?> taxonBase = taxonService.find(taxon.getUuid()); |
| 374 | 374 |
Assert.assertNotNull("Taxon should still be in database",taxonBase);
|
| ... | ... | |
| 396 | 396 |
*/ |
| 397 | 397 |
@Test |
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@DataSet(loadStrategy=CleanSweepInsertLoadStrategy.class) |
| 399 |
public void testDeleteTaxonNameBaseAsStoredUnder() {
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final String[] tableNames = new String[]{"TaxonNameBase","SpecimenOrObservationBase"};
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public void testDeleteTaxonNameAsStoredUnder() {
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final String[] tableNames = new String[]{"TaxonName","SpecimenOrObservationBase"};
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TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
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TaxonName name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
| 403 | 403 |
name1.setTitleCache("Name1", true);
|
| 404 | 404 |
DerivedUnit specimen = DerivedUnit.NewPreservedSpecimenInstance(); |
| 405 | 405 |
specimen.setStoredUnder(name1); |
| ... | ... | |
| 438 | 438 |
*/ |
| 439 | 439 |
@Test |
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@Ignore //currently does not run in suite |
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public void testDeleteTaxonNameBaseInSource() {
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final String[] tableNames = new String[]{"TaxonNameBase","DescriptionBase","TaxonBase","OriginalSourceBase","DescriptionElementBase"};
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public void testDeleteTaxonNameInSource() {
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final String[] tableNames = new String[]{"TaxonName","DescriptionBase","TaxonBase","OriginalSourceBase","DescriptionElementBase"};
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TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
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TaxonName name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
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| 445 | 445 |
name1.setTitleCache("Name1", true);
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TaxonNameBase<?,?> taxonName = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
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TaxonName taxonName = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
| 447 | 447 |
taxonName.setTitleCache("taxonName", true);
|
| 448 | 448 |
Taxon taxon = Taxon.NewInstance(taxonName, null); |
| 449 | 449 |
|
| ... | ... | |
| 496 | 496 |
*/ |
| 497 | 497 |
@Test |
| 498 | 498 |
|
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public void testDeleteTaxonNameBaseAsType() {
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final String[] tableNames = new String[]{"TaxonNameBase","TypeDesignationBase","TaxonNameBase_TypeDesignationBase"};
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public void testDeleteTaxonNameAsType() {
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final String[] tableNames = new String[]{"TaxonName","TypeDesignationBase","TaxonName_TypeDesignationBase"};
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| 501 | 501 |
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TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
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TaxonName name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
| 503 | 503 |
name1.setTitleCache("Name used as type", true);
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| 504 | 504 |
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TaxonNameBase<?,?> higherName = TaxonNameFactory.NewBotanicalInstance(getGenusRank());
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TaxonName<?,?> higherName = TaxonNameFactory.NewBotanicalInstance(getGenusRank()); |
|
| 506 | 506 |
higherName.setTitleCache("genus name", true);
|
| 507 | 507 |
NameTypeDesignationStatus typeStatus = (NameTypeDesignationStatus)termService.find(NameTypeDesignationStatus.AUTOMATIC().getUuid()); |
| 508 | 508 |
boolean addToAllHomotypicNames = true; |
| ... | ... | |
| 540 | 540 |
*/ |
| 541 | 541 |
@Test |
| 542 | 542 |
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public void testDeleteTaxonNameBase() {
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final String[] tableNames = new String[]{"TaxonNameBase","NameRelationship","HybridRelationship","DescriptionBase","NomenclaturalStatus","TaxonBase","SpecimenOrObservationBase","OriginalSourceBase","DescriptionElementBase","TypeDesignationBase","TaxonNameBase_TypeDesignationBase"};
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public void testDeleteTaxonName() {
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final String[] tableNames = new String[]{"TaxonName","NameRelationship","HybridRelationship","DescriptionBase","NomenclaturalStatus","TaxonBase","SpecimenOrObservationBase","OriginalSourceBase","DescriptionElementBase","TypeDesignationBase","TaxonName_TypeDesignationBase"};
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| 545 | 545 |
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TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
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TaxonName name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
| 547 | 547 |
name1.setTitleCache("Name1", true);
|
| 548 | 548 |
|
| 549 | 549 |
//TaxonNameDescription |
| ... | ... | |
| 614 | 614 |
* Test method for {@link eu.etaxonomy.cdm.api.service.NameServiceImpl#generateTitleCache()}.
|
| 615 | 615 |
*/ |
| 616 | 616 |
@Test |
| 617 |
public void testDeleteTaxonNameBaseWithTypeInHomotypicalGroup() {
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final String[] tableNames = new String[]{"TaxonNameBase","NameRelationship","HybridRelationship","DescriptionBase","NomenclaturalStatus","TaxonBase","SpecimenOrObservationBase","OriginalSourceBase","DescriptionElementBase","TypeDesignationBase","TaxonNameBase_TypeDesignationBase"};
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public void testDeleteTaxonNameWithTypeInHomotypicalGroup() {
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final String[] tableNames = new String[]{"TaxonName","NameRelationship","HybridRelationship","DescriptionBase","NomenclaturalStatus","TaxonBase","SpecimenOrObservationBase","OriginalSourceBase","DescriptionElementBase","TypeDesignationBase","TaxonName_TypeDesignationBase"};
|
|
| 619 | 619 |
|
| 620 | 620 |
//Type Designations for homotypical group with > 1 names |
| 621 |
TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
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TaxonName name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
| 622 | 622 |
name1.setTitleCache("Name1 with type designation", true);
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TaxonNameBase<?,?> name2 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank());
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TaxonName name2 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
|
| 624 | 624 |
name2.setTitleCache("Name2 with type designation", true);
|
| 625 | 625 |
name2.setHomotypicalGroup(name1.getHomotypicalGroup()); |
| 626 | 626 |
|
| ... | ... | |
| 652 | 652 |
@DataSet(loadStrategy=CleanSweepInsertLoadStrategy.class) |
| 653 | 653 |
public void testDeleteTypeDesignation() {
|
| 654 | 654 |
final String[] tableNames = new String[]{
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| 655 |
"TaxonNameBase","TypeDesignationBase","TaxonNameBase_TypeDesignationBase",
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"TaxonName","TypeDesignationBase","TaxonName_TypeDesignationBase",
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| 656 | 656 |
"SpecimenOrObservationBase"}; |
| 657 | 657 |
|
| 658 | 658 |
// IBotanicalName name1 = TaxonNameFactory.NewBotanicalInstance(getSpeciesRank()); |
| ... | ... | |
| 697 | 697 |
// |
| 698 | 698 |
|
| 699 | 699 |
|
| 700 |
TaxonNameBase<?,?> name1 = this.nameService.load(UUID.fromString("6dbd41d1-fe13-4d9c-bb58-31f051c2c384"));
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| 701 |
TaxonNameBase<?,?> name2 = this.nameService.load(UUID.fromString("f9e9c13f-5fa5-48d3-88cf-712c921a099e"));
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| 702 |
TaxonNameBase<?,?> name3 = this.nameService.load(UUID.fromString("e1e66264-f16a-4df9-80fd-6ab5028a3c28"));
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| 700 |
TaxonName name1 = this.nameService.load(UUID.fromString("6dbd41d1-fe13-4d9c-bb58-31f051c2c384"));
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| 701 |
TaxonName name2 = this.nameService.load(UUID.fromString("f9e9c13f-5fa5-48d3-88cf-712c921a099e"));
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| 702 |
TaxonName name3 = this.nameService.load(UUID.fromString("e1e66264-f16a-4df9-80fd-6ab5028a3c28"));
|
|
| 703 | 703 |
DerivedUnit specimen1 = CdmBase.deproxy(this.occurrenceService.load(UUID.fromString("0d19a9ca-21a7-4adb-8640-8d6719e15eea")), DerivedUnit.class);
|
| 704 | 704 |
DerivedUnit fossil = CdmBase.deproxy(this.occurrenceService.load(UUID.fromString("4c48b7c8-4c8d-4e48-b083-0837fe51a0a9")), DerivedUnit.class);
|
| 705 | 705 |
|
| ... | ... | |
| 713 | 713 |
Assert.assertEquals("Specimen1 should be used in 1 type designation", 1, specimen1.getSpecimenTypeDesignations().size());
|
| 714 | 714 |
Assert.assertEquals("Fossil should be used in 1 type designation", 1, fossil.getSpecimenTypeDesignations().size());
|
| 715 | 715 |
|
| 716 |
nameService.deleteTypeDesignation((TaxonNameBase)null, null);
|
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| 716 |
nameService.deleteTypeDesignation((TaxonName)null, null); |
|
| 717 | 717 |
|
| 718 | 718 |
commitAndStartNewTransaction(tableNames); |
| 719 | 719 |
|
| ... | ... | |
| 808 | 808 |
@DataSet |
| 809 | 809 |
public void testDeleteTypeDesignationAllNames() {
|
| 810 | 810 |
final String[] tableNames = new String[]{
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| 811 |
"TaxonNameBase","TypeDesignationBase",
|
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| 812 |
"TaxonNameBase_TypeDesignationBase","SpecimenOrObservationBase"};
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| 811 |
"TaxonName","TypeDesignationBase", |
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| 812 |
"TaxonName_TypeDesignationBase","SpecimenOrObservationBase"}; |
|
| 813 | 813 |
|
| 814 | 814 |
|
| 815 |
TaxonNameBase<?,?> name1 = this.nameService.load(UUID.fromString("6dbd41d1-fe13-4d9c-bb58-31f051c2c384"));
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| 816 |
TaxonNameBase<?,?> name2 = this.nameService.load(UUID.fromString("f9e9c13f-5fa5-48d3-88cf-712c921a099e"));
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| 817 |
TaxonNameBase<?,?> name3 = this.nameService.load(UUID.fromString("e1e66264-f16a-4df9-80fd-6ab5028a3c28"));
|
|
| 815 |
TaxonName name1 = this.nameService.load(UUID.fromString("6dbd41d1-fe13-4d9c-bb58-31f051c2c384"));
|
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| 816 |
TaxonName name2 = this.nameService.load(UUID.fromString("f9e9c13f-5fa5-48d3-88cf-712c921a099e"));
|
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| 817 |
TaxonName name3 = this.nameService.load(UUID.fromString("e1e66264-f16a-4df9-80fd-6ab5028a3c28"));
|
|
| 818 | 818 |
DerivedUnit specimen1 = CdmBase.deproxy(this.occurrenceService.load(UUID.fromString("0d19a9ca-21a7-4adb-8640-8d6719e15eea")), DerivedUnit.class);
|
| 819 | 819 |
DerivedUnit fossil = CdmBase.deproxy(this.occurrenceService.load(UUID.fromString("4c48b7c8-4c8d-4e48-b083-0837fe51a0a9")), DerivedUnit.class);
|
| 820 | 820 |
|
Also available in: Unified diff
fix #6368 rename table and class TaxonNameBase