Revision 9dc896c9
Added by Andreas Müller almost 7 years ago
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/data/FullCoverageDataGenerator.java | ||
|---|---|---|
| 105 | 105 |
import eu.etaxonomy.cdm.model.name.Rank; |
| 106 | 106 |
import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation; |
| 107 | 107 |
import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus; |
| 108 |
import eu.etaxonomy.cdm.model.name.TaxonNameBase;
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|
| 108 |
import eu.etaxonomy.cdm.model.name.TaxonName; |
|
| 109 | 109 |
import eu.etaxonomy.cdm.model.name.TaxonNameFactory; |
| 110 | 110 |
import eu.etaxonomy.cdm.model.occurrence.Collection; |
| 111 | 111 |
import eu.etaxonomy.cdm.model.occurrence.DerivationEvent; |
| ... | ... | |
| 195 | 195 |
//Others |
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try {
|
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LSIDAuthority lsidAuthority = new LSIDAuthority("My authority");
|
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lsidAuthority.addNamespace("lsidNamespace", TaxonNameBase.class);
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|
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lsidAuthority.addNamespace("lsidNamespace", TaxonName.class);
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|
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cdmBases.add(lsidAuthority); |
| 200 | 200 |
} catch (MalformedLSIDException e) {
|
| 201 | 201 |
e.printStackTrace(); |
| ... | ... | |
| 397 | 397 |
handleAnnotatableEntity(specDesc); |
| 398 | 398 |
|
| 399 | 399 |
//Name description |
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TaxonNameBase<?,?> name = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS());
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|
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TaxonName name = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS()); |
|
| 401 | 401 |
TaxonNameDescription nameDesc = TaxonNameDescription.NewInstance(name); |
| 402 | 402 |
cdmBases.add(name); |
| 403 | 403 |
handleAnnotatableEntity(nameDesc); |
| ... | ... | |
| 622 | 622 |
|
| 623 | 623 |
private void createTaxon(List<CdmBase> cdmBases) {
|
| 624 | 624 |
Reference sec = getReference(); |
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TaxonNameBase<?,?> name = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS());
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|
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TaxonName name = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS()); |
|
| 626 | 626 |
Taxon taxon = Taxon.NewInstance(name, sec); |
| 627 | 627 |
handleIdentifiableEntity(taxon); |
| 628 | 628 |
|
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TaxonNameBase<?,?> synName = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS());
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|
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TaxonName synName = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS()); |
|
| 630 | 630 |
Synonym syn = Synonym.NewInstance(synName, sec, "123"); |
| 631 | 631 |
taxon.addSynonym(syn, SynonymType.HETEROTYPIC_SYNONYM_OF()); |
| 632 | 632 |
taxon.setDoubtful(true); |
| ... | ... | |
| 760 | 760 |
mediaSpecimen.setAccessionNumber("accessionNumber");
|
| 761 | 761 |
// mediaSpecimen.setCollectorsNumber("collectorsNumber");
|
| 762 | 762 |
mediaSpecimen.setBarcode("barcode");
|
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TaxonNameBase<?,?> storedUnder = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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|
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TaxonName storedUnder = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES()); |
|
| 764 | 764 |
storedUnder.setTitleCache("Stored under", true);
|
| 765 | 765 |
mediaSpecimen.setStoredUnder(storedUnder); |
| 766 | 766 |
mediaSpecimen.setExsiccatum("exsiccatum");
|
| ... | ... | |
| 807 | 807 |
|
| 808 | 808 |
|
| 809 | 809 |
private void createTaxonName(List<CdmBase> cdmBases) {
|
| 810 |
TaxonNameBase<?,?> bacName = TaxonNameFactory.NewBacterialInstance(Rank.GENUS());
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|
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TaxonName bacName = TaxonNameFactory.NewBacterialInstance(Rank.GENUS()); |
|
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bacName.setSubGenusAuthorship("sub Genus author");
|
| 812 | 812 |
bacName.setNameApprobation("nameApprobation");
|
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handleIdentifiableEntity(bacName); |
| 814 | 814 |
|
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TaxonNameBase<?,?> botName = TaxonNameFactory.NewCultivarInstance(Rank.SUBSPECIES());
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|
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TaxonName botName = TaxonNameFactory.NewCultivarInstance(Rank.SUBSPECIES()); |
|
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botName.setAnamorphic(true); |
| 817 | 817 |
botName.setCultivarName("cultivarName");
|
| 818 | 818 |
botName.setGenusOrUninomial("Genus");
|
| ... | ... | |
| 829 | 829 |
botName.setExBasionymAuthorship(exBasionymAuthorship); |
| 830 | 830 |
handleIdentifiableEntity(botName); |
| 831 | 831 |
handleAnnotatableEntity(botName.getHomotypicalGroup()); |
| 832 |
TaxonNameBase<?,?> botName2 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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|
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TaxonName botName2 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES()); |
|
| 833 | 833 |
HybridRelationship hybridRel = botName2.addHybridChild(botName, HybridRelationshipType.FIRST_PARENT(), "Rule 1.2.3"); |
| 834 | 834 |
hybridRel.setCitation(ReferenceFactory.newBook()); |
| 835 | 835 |
hybridRel.setCitationMicroReference("p. 123");
|
| 836 | 836 |
handleAnnotatableEntity(hybridRel); |
| 837 | 837 |
|
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TaxonNameBase<?,?> zooName = TaxonNameFactory.NewZoologicalInstance(Rank.GENUS());
|
|
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TaxonName zooName = TaxonNameFactory.NewZoologicalInstance(Rank.GENUS()); |
|
| 839 | 839 |
zooName.setBreed("breed");
|
| 840 | 840 |
zooName.setPublicationYear(1922); |
| 841 | 841 |
zooName.setOriginalPublicationYear(1987); |
| ... | ... | |
| 851 | 851 |
handleIdentifiableEntity(zooName); |
| 852 | 852 |
|
| 853 | 853 |
//TypeDesignation |
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TaxonNameBase<?,?> speciesZooName = TaxonNameFactory.NewZoologicalInstance(Rank.SPECIES());
|
|
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TaxonName speciesZooName = TaxonNameFactory.NewZoologicalInstance(Rank.SPECIES()); |
|
| 855 | 855 |
NameTypeDesignation nameDesig = zooName.addNameTypeDesignation(speciesZooName, getReference(), "111", "original name", |
| 856 | 856 |
NameTypeDesignationStatus.AUTOMATIC(), true, true, true, true); |
| 857 | 857 |
handleAnnotatableEntity(nameDesig); |
| ... | ... | |
| 859 | 859 |
getReference(), "p,22", "original name", false, true); |
| 860 | 860 |
handleAnnotatableEntity(specimenDesig); |
| 861 | 861 |
|
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TaxonNameBase<?,?> viralName = TaxonNameFactory.NewViralInstance(Rank.GENUS());
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|
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TaxonName viralName = TaxonNameFactory.NewViralInstance(Rank.GENUS()); |
|
| 863 | 863 |
viralName.setAcronym("acronym");
|
| 864 | 864 |
handleIdentifiableEntity(viralName); |
| 865 | 865 |
|
| ... | ... | |
| 946 | 946 |
|
| 947 | 947 |
private Taxon getTaxon() {
|
| 948 | 948 |
Reference sec = getReference(); |
| 949 |
TaxonNameBase<?,?> name = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS());
|
|
| 949 |
TaxonName name = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS()); |
|
| 950 | 950 |
Taxon taxon = Taxon.NewInstance(name, sec); |
| 951 | 951 |
return taxon; |
| 952 | 952 |
|
Also available in: Unified diff
fix #6368 rename table and class TaxonNameBase