EDIT

ref #7392 remove cascade from relationships and adapt tests (up to service layer)

cleanup

minor

revert test changes

DeleteResult should contain a list of deleted objects, update delete methods

smaller changes in ForSubtreeConfigurator

add monitoredService method for setsecundum

fix #3740 implement setPublish for subtrees

fix #6368 rename table and class TaxonNameBase

ref #6368 remove TaxonNameBase subclasses

use remotingProgressMonitor for setSecundumReferenceForSubtree

ref #6362, ref #6365 remove occurrence of NonViralName, BotanicalName, ZoologicalName and others

ref #6365 use TaxonNameFactory for botanical names

ref #6365 merge static methods from BotanicaName to TaxonNameBase

fix #3465 Progressmonitor API and better UpdateResult handling for setSecundumForSubtree

fix #3465 implement setSecundumForSubtree

ref #6190 removing svn property place holder in first line of code

Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop

Conflicts:
cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ITaxonNodeService.java

ref #2380 Implement service for getting parent of
UuidAndTitleCache

• parent of either ITaxonTree or UuidAndTitleCache can be retrieved
• added JUnit test and test file

ref #2380 Implement service for getting children of
UuidAndTitleCache

• direct children of either ITaxonTree or UuidAndTitleCache can be retrieved
• added JUnit test

Improve taxon delete test

Cleanup merge model 4.1/develop

Merge remote-tracking branch 'origin/develop' into develop

Conflicts:
cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonNode.java
cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImpl.java
cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java...

ref #6099: removing cascading to child nodes and adapting the service and persistence layer

ref #5974 Replace synonymRelationshipType by SynonymType and replace some other occurrences of synonym relationship

ref #5974 Remove synonym relationship first compiling implementation in cdmlib

delete system.out.println from test

Clean up

ref #6045 some comments and clean up

fix #6045: fixing the NaturalOrderComparator and complete the test

ref #6045 Fix NPE for TaxonNaturalComparator

• fix getAncestors() method of taxon node
• added JUnit test

delete system.out.println from test

Clean up

ref #6045 some comments and clean up

fix #6045: fixing the NaturalOrderComparator and complete the test

ref #6045 Fix NPE for TaxonNaturalComparator

• fix getAncestors() method of taxon node
• added JUnit test

Remove generics from Reference in cdmlib (except for cdmlib-model) #5830

Fix CCE in DefinedTermDaoImpl.getPartOf (#5556) and make deproxy more
generic

fix #5179 and adapting the tests because the classification argument is needed now

fix delete of specimen with specimenDescriptions

fixing move Accepted taxon to synonym

set the test to ignore, because the funcionality is not implemented yet.

changes for tcs import, fixing taxonnodecomparator, polytomouskey deletion and converting from person to team and team to person

#5056 Refactored 'save' call to return saved entity

• add @Audited to all type properties
• add taxonNodeComparator for rank and alphabetical orderedVocabularyDao
• change delete() methods arguments to UUIDs

fix search for common names in editor and minor

• change visibility of createTestDataSet to public

• added abstract method createTestData() to CdmIntegrationalTest
  • method should be used for generatin test XML data sets
  • making it abstract and enforcing implementation in sub classes ensures that the same structure is used thus making it easier for the developer to find similar examples....

fix delete taxon nodes with children

minor

return value of delete methods are DeleteResults

IService, ServiceBase : added method findWithoutFlush
CdmCacher, CdmDaoCacher : split CdmCacher class to sub class which uses dao to access the data
MockCdmCacher : added mock cdm cacher for tests
TaxonNodeServiceImplTest, FeatureNodeServiceImplTest : removed duplicate @SpringApplicationContext annotation...

if deletion of an object fails the method does not throw an exception but returns a message

add tests for treeIndex and deletion of nodes

move taxon to homotypical synonym fixed

fix changeTaxonToSynonym with homotypic Synonyms

fix bug in change accepted taxa to synonym with taxonrelations

fixing 2 tests for the new classification structure

#3948 first step, if a taxon is used in a polytomous key, the taxonNode will be deleted, but the taxon will not be removed.

minor

service adaption for deletion of a selection of taxonnodes

merging delete functionality into trunk

fix failing test lucene indexing test in TaxonNodeServiceImplTest

bugfix for failing TaxonNodeService test

implement tree index update

minor changes

security stuff

using TesingTermInitializer also in services, needs own TermsDataSet. Also fixing some testdataSets. And logging improvements

improved "move synonym" (#2578), also adapted constructor of SynonymRelationship to adapt homotypic group of homotypic synonyms.

bugfix for test

minor

bugfix for test

bugfix for #2558 (concurrent modification in TaxonNodeServiceImpl.makeTaxonNodeASynonymOfAnotherTaxonNode(...) )

Failing tests set to ignore

Refactoring of taxon business logic methods and started to write tests for these methods. The tests are far from finished.