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From 06/11/2023 to 07/10/2023

07/10/2023

01:53 PM bug #10370 (Resolved): Doi link does not link to the reference
Please review Katja Luther
01:52 PM bug #10370 (Closed): Doi link does not link to the reference
mail ERS:
und die Links vom Portal zu den doi’s von bibliographischen Referenzen führen zur doi -Homepage, nicht z...
Katja Luther
01:46 PM bug #10369 (Resolved): Show full source information for concept relations in footnotes
This should be fixed Katja Luther
01:45 PM bug #10369 (Closed): Show full source information for concept relations in footnotes
mail ERS:
gerade ist mir aufgefallen, dass im Portal die Details der bibliografischen Fußnoten verschwunden sind, ...
Katja Luther
11:47 AM feature request #10368 (Closed): Allow excluding factual data from cdmlight export
Andreas Müller wrote in #note-3:
> Generally this seems to work. The only open issue is that the checkbox is shown b...
Katja Luther
11:46 AM Revision eb98b46c (taxeditor): ref #10368: adapt wizard page
Katja Luther
10:18 AM bug #10360 (Closed): Correct Name in Source display in portal
Katja Luther

07/08/2023

12:33 PM Revision 1f8b88d2 (cdmlib): ref #10324 fix namedArea fetching in import base
Andreas Müller

07/07/2023

04:43 PM feature request #10133: Improve ontology state vocabularies
Only open issue: test states used by Lactucinae Andreas Müller
04:39 PM bug #10360 (Feedback): Correct Name in Source display in portal
Works as expected (if "should be shown only in synonymy list" acutally means "in **bibliography** ). Please close tic... Andreas Müller
04:17 PM feature request #10368 (Resolved): Allow excluding factual data from cdmlight export
Generally this seems to work. The only open issue is that the checkbox is shown beside the "include unpublished" chec... Andreas Müller
12:56 PM feature request #10368 (In Progress): Allow excluding factual data from cdmlight export
Andreas Müller
12:35 PM feature request #10368: Allow excluding factual data from cdmlight export
This is already implemented in cdmlib, please add the filter checkbox to TaxEditor cdmlight export UI. Andreas Müller
12:33 PM feature request #10368 (Closed): Allow excluding factual data from cdmlight export
To allow exporting larger checklists without OOM-Exceptions. Andreas Müller
02:33 PM Revision 4b73cbac (taxeditor): cleanup
Andreas Müller
02:00 PM Revision 6e2b2e22 (taxeditor): cleanup
Andreas Müller
02:00 PM Revision 8b788d26 (taxeditor): ref #10368 add Checkbox to cdm-l export
Andreas Müller
01:42 PM Revision 713d73ac (cdm-dataportal): show long citation in footnote for taxonrelation
Katja Luther
01:28 PM Revision 09988eeb (cdmlib): revert ref #10322 make sourceDto.label a simple attribute, not a list
Andreas Müller
12:54 PM feature request #10367 (Closed): Add citationMicroReference to description of sources in ReferencingObjectsView
Works as expected in TaxEditor Andreas Müller
11:25 AM feature request #10367 (Resolved): Add citationMicroReference to description of sources in ReferencingObjectsView
Andreas Müller
11:23 AM feature request #10367 (Closed): Add citationMicroReference to description of sources in ReferencingObjectsView
This is helpful when e.g. cleaning up references used as nomenclatural references Andreas Müller
12:37 PM Revision 6db75b51 (taxeditor): fix compile error after cleanup
Andreas Müller
12:34 PM Revision 7c2747c0 (cdmlib): ref #10368 allow excluding factual data from cdmlight export
Andreas Müller
12:17 PM Revision da2afa14 (cdmlib): ref #10322 make sourceDto.label a simple attribute, not a list
Andreas Müller
12:15 PM Revision 0fe41643 (cdmlib): cleanup
Andreas Müller
11:24 AM Revision 237b22e1 (cdmlib): ref #10367 add citationMicroReference to description of sources in ReferencingObjectsView
Andreas Müller
10:59 AM Revision 84183564 (cdmlib): ref #10322 fix NPE in concept relation loading
Andreas Müller

07/06/2023

12:55 PM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
… dann nochmal in E+M nachdem der Editor einige Tage offen war mit Taxa aber auch TermTrees:
~~~
last remote service...
Andreas Müller
09:10 AM feature request #10362 (In Progress): Implement noDataStatus in matrix and details view
This needs to be added to the matrix and to the details view of categorical and quantitative data.
In matrix for cat...
Katja Luther
12:16 AM Revision 61b49985 (cdm-vaadin): cleanup
Andreas Müller
12:13 AM Revision 0c62b8f8 (cdm-vaadin): ref #2975 update testH2 in vaadin
Andreas Müller
12:12 AM Revision 81188195 (taxeditor): ref #2975 update testH2 in taxEditor
Andreas Müller
12:10 AM Revision b195723c (cdmlib): ref #2975 update testH2 in cdmlib
Andreas Müller

07/05/2023

11:57 PM Revision 2992380a (cdmlib): ref #2975 add noDataStatus to descriptive data (cont. 2)
Andreas Müller
11:54 PM Revision 92bdbd44 (cdmlib): ref #2975 add noDataStatus to descriptive data (cont.)
Andreas Müller
11:39 PM Revision 239ef29d (cdmlib): ref #10322 handle sec- and relSource in taxon relations
Andreas Müller
11:37 PM Revision 1c97323a (cdmlib): cleanup
Andreas Müller
11:32 PM feature request #2975 (Resolved): Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
Andreas Müller
11:30 PM Revision 16101b8b (cdmlib): minor
Andreas Müller
02:56 PM Revision 17de2f08 (cdmlib): ref #2975 add noDataStatus to descriptive data
Andreas Müller
02:38 PM bug #10360 (Resolved): Correct Name in Source display in portal
Katja Luther
02:38 PM bug #10360: Correct Name in Source display in portal
Andreas Müller wrote in #note-5:
> Can you add an example link?
https://test.e-taxonomy.eu/dataportal/preview/eur...
Katja Luther
01:14 PM Revision 0be7d592 (cdmlib): ref #10178 some cleanup for name matching (cont.)
Andreas Müller

07/04/2023

10:58 PM task #10324: Export Caucasus data
Common names. ERS:
Also, wenn man individuell filtern kann, sollte es eher so aussehen:
~~~
Georgia: - Georgian (Ge...
Andreas Müller
06:53 PM Revision 5f2f7f86 (cdmlib): ref #10178 some cleanup for name matching (not finished yet)
Andreas Müller
08:38 AM Revision a5c62011 (taxeditor): adapt editor to changes in TermvocabularyService - continue
Katja Luther

07/03/2023

05:31 PM Revision 7bc41f05 (cdmlib): ref #10322 fix exception in PortalDtoLoader due to namedArea.includes proxies (cont.)
Andreas Müller
04:56 PM Revision 6f5c9540 (cdmlib): cleanup
Andreas Müller
04:55 PM Revision 83a81b70 (cdmlib): ref #10322 fix exception in PortalDtoLoader due to namedArea.includes proxies
Andreas Müller
02:52 PM Revision 859f2a9e (cdmlib): fix termDto selects
Katja Luther
02:30 PM Revision b8b6af13 (taxeditor): Merge branch 'develop' of ssh://git@dev.e-taxonomy.eu/var/git/taxeditor.git into develop
Katja Luther
02:29 PM Revision 3d40f455 (taxeditor): adapt taxEditor to clean up in dto methods
Katja Luther
02:27 PM Revision fe5665b8 (cdmlib): clean up dto methods
Katja Luther
12:00 PM Revision 2ace6e6b (taxeditor): fix remaining compile error
Andreas Müller
11:51 AM Revision 70e0c4b0 (taxeditor): cleanup
Andreas Müller
11:51 AM Revision ee6329a0 (taxeditor): fix compile error after cleanup
Andreas Müller
10:06 AM Revision 956938b6 (cdmlib): comment test that should not yet be committed
Andreas Müller
09:07 AM bug #10360 (Feedback): Correct Name in Source display in portal
Can you add an example link? Andreas Müller
09:04 AM bug #10365: Selecting NamedArea tree in distribution preference does not work for distribution editor
The functionality seems to work. Andreas Müller
08:55 AM bug #10365 (Feedback): Selecting NamedArea tree in distribution preference does not work for distribution editor
Still needs code cleanup (see mail). Usage of correct method names and correct service/dao. Andreas Müller
08:39 AM Revision 0e6dcd69 (cdmlib): fix compile error and cleanup
Andreas Müller
08:30 AM Revision dba6092a (cdmlib): remove unused method and cleanup
Andreas Müller

07/02/2023

12:45 PM Revision bcb3b9a1 (cdmlib): ref #10324 adaptations to Cdm2CdmImport for Caucasus exports
Andreas Müller
12:45 PM Revision 56901e49 (cdmlib): cleanup
Andreas Müller
12:29 PM Revision 12a9060e (cdmlib-apps): ref #10324 add latest changes for Caucasus export
Andreas Müller

06/30/2023

11:19 AM Revision ee59afa9 (cdmlib): ref #10364: add state modifiers to dto
Katja Luther

06/29/2023

02:18 PM bug #10365 (Resolved): Selecting NamedArea tree in distribution preference does not work for distribution editor
This should be fixed. Please review. Katja Luther
02:02 PM Revision 2e716bfb (cdmlib): ref #10365: use getTermcollectionDto
Katja Luther
01:38 PM Revision 9a61077d (taxeditor): ref #10365: termTrees should be usable in term selection wizards
Katja Luther
01:34 PM Revision 62c4f1d4 (cdmlib): ref #10365: adapt termDtos to use trees similar to vocabularies in
editor Katja Luther
01:03 PM feature request #10351 (Duplicate): Geosearch with full taxon tree result, eventually printer friendly
Andreas Müller
12:56 PM bug #10366 (New): Adapt advanced search to use area tree
Since the mosses import the advanced search does not look nice anymore: https://www.europlusmed.org/cdm_dataportal/se... Andreas Müller
12:37 PM task #10356 (In Progress): Combine Caryophyllales data portals
Andreas Müller

06/28/2023

10:17 AM Revision 55f00b28 (cdm-dataportal): fix doi handling for dto pages
Katja Luther
06:55 AM task #10324: Export Caucasus data
Excluded nodes:
~~~
SELECT tn.id, tn.UUID, treeIndex, n.nameCache
FROM TaxonNode tn INNER JOIN TaxonBase tb ON tb.id ...
Andreas Müller
12:00 AM task #10324: Export Caucasus data
Remove import sources does not work yet Andreas Müller

06/27/2023

05:23 PM task #10324: Export Caucasus data
Available languages for common names:
~~~
SELECT deb.language_id, lang.titleCache, lang.uuid, COUNT(*) AS n
FROM...
Andreas Müller
02:41 PM bug #10365: Selecting NamedArea tree in distribution preference does not work for distribution editor
Setting to highest as this is a regression. Andreas Müller
02:38 PM bug #10365 (Closed): Selecting NamedArea tree in distribution preference does not work for distribution editor
When selecting a tree for the distribution area preference does not work for the distribution editor. The selection d... Katja Luther
01:25 PM feature request #10361 (Resolved): Managed terms and term collections should not be editable in taxeditor
This should be fixed. Katja Luther
01:23 PM Revision 8c77d16e (taxeditor): Merge branch 'develop' of ssh://git@dev.e-taxonomy.eu/var/git/taxeditor.git into develop
Katja Luther
01:22 PM Revision 7fbf0934 (taxeditor): ref #10336: supplemental data of managed terms shouldn't be editable
Katja Luther
01:21 PM Revision ad7d7209 (cdmlib): ref #10335: adapt character node dto
Katja Luther
01:14 PM feature request #2975: Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
Also handle value in aggregation and key generation (how exactly?) Andreas Müller
01:14 PM feature request #2975: Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
Andreas Müller wrote in #note-17:
> Also add evaluate field for QuantitativeDataFormatter and CategoricalDataFormatt...
Andreas Müller
11:52 AM feature request #2975: Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
Also add evaluate field for QuantitativeDataFormatter and CategoricalDataFormatter. Andreas Müller
10:27 AM feature request #2975: Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
NoK:
wir hatten das Thema auch schon mehrfach in Additivity. Bei einer teilausgefüllten Matrix ist es misslich, da...
Andreas Müller
12:29 PM Revision 7587335a (cdmlib): ref #10361: add null check to avoid NPE
Katja Luther
12:09 PM feature request #10364 (Closed): Implement state modifiers for matrix
Currently state modifiers can only be edited in details view (see also #10340) but it is also necessary to edit them ... Andreas Müller
11:59 AM bug #10363 (Feedback): Find a solution for importing all shared preferences in a new eclipse installation
Currently we use the Remote Workspace Preferences Plugin, but for the newest eclipse version this does not work anymo... Katja Luther
11:53 AM feature request #10362 (Closed): Implement noDataStatus in matrix and details view
The enumeration was added with #2975 (not yet pushed).
For now it should be implemented such that the enumerated s...
Andreas Müller
11:26 AM Revision c5f6f874 (cdmlib): cleanup
Andreas Müller

06/26/2023

07:24 PM feature request #10335 (Closed): Allow editing supplemental data for TermNodes
Andreas Müller
06:12 PM feature request #10335: Allow editing supplemental data for TermNodes
Andreas Müller wrote in #note-28:
> Only created is shown, not updated.
this is fixed now.
Katja Luther
07:20 PM Revision 876c62e8 (taxeditor): cleanup
Andreas Müller
06:12 PM Revision ff9c6b15 (taxeditor): ref #10335: show always updated informations
Katja Luther
06:11 PM Revision 525c1113 (cdmlib): ref #10335: saving termnode changes need call of saveOrUpdate
Katja Luther
02:20 PM Revision 2435302b (taxeditor): ref #10361: disable managed terms and term collections
Katja Luther
02:19 PM Revision 363e92f4 (cdmlib): ref #10361: add isManaged to termbase dtos
Katja Luther
01:45 PM feature request #2975: Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
WGB:
Es kommt vor (z.B. wenn der Typus das einzige Exemplar einer Art ist), dass man effektiv nicht weiß, auf welc...
Andreas Müller
01:44 PM feature request #2975 (In Progress): Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
Reopen to allow using an enum, not only a single bit. Andreas Müller
11:17 AM feature request #10361: Managed terms and term collections should not be editable in taxeditor
I added the transient method isManaged() to all TermBase Andreas Müller
11:14 AM feature request #10361 (Closed): Managed terms and term collections should not be editable in taxeditor
They can be recognized by calling TermBase.isManaged(). This holds for DefinedTermBase and TermCollection including T... Andreas Müller
11:16 AM Revision a274e0db (cdmlib): ref #10361 add isManaged to managed terms
Andreas Müller
11:05 AM Revision 8516ae4d (cdmlib): cleanup
Andreas Müller
11:05 AM Revision d16a08e8 (cdmlib): ref #9771 fix Character.propertey and .ratioToStructure handling
Andreas Müller
10:43 AM bug #10360 (Resolved): Correct Name in Source display in portal
This should be fixed. I will update the test instance of euro + med, then you can review. Katja Luther
10:41 AM bug #10360 (Closed): Correct Name in Source display in portal
The name in source should be shown only in bibliography and only the epithet should be in italics (dto page). Katja Luther
10:42 AM Revision a690d6d5 (cdm-dataportal): ref #10360: correct display of name in source in dto page
Katja Luther

06/23/2023

05:09 PM Revision bcb26840 (cdmlib): ref #10318: add missing base class
Katja Luther
04:40 PM Revision fa85a482 (taxeditor): ref #10318: adapt termnode suppl. data to changes in dto
Katja Luther
04:39 PM Revision 70e950a8 (cdmlib): ref #10318: code cleaning and add updated informations to dtos
Katja Luther
04:29 PM task #10359 (New): Integrate Vienna common names into E+M
Waiting for API link...
Reconciliation service avaiable at: https://bioling.acdh.oeaw.ac.at/reconcile . Many names...
Andreas Müller
02:19 PM feature request #10354: Show term data in term node details view
AM:
es werden jetzt bei NamedAreas trotzdem inapplicableIf und so angezeigt, was nicht dahin gehört. Außerdem ist ...
Andreas Müller
01:29 PM feature request #10354 (In Progress): Show term data in term node details view
Andreas Müller
01:30 PM feature request #10335 (Feedback): Allow editing supplemental data for TermNodes
Only created is shown, not updated. Andreas Müller
12:17 PM feature request #10335 (Resolved): Allow editing supplemental data for TermNodes
Andreas Müller wrote in #note-26:
> Editing now fully works. Only the created/updated information is still missing.
...
Katja Luther
12:55 PM bug #10358: Remove supportsTextData for Characters
After release existing data should be checked (and corrected) by
~~~
SELECT dtb.DTYPE, created,dtb.id, dtb.title...
Andreas Müller
12:53 PM bug #10358 (Resolved): Remove supportsTextData for Characters
Applied in changeset commit:cdmlib|28c28ef158dd15836e745c78978b976d57d01eb6. Andreas Müller
12:51 PM bug #10358 (Closed): Remove supportsTextData for Characters
A Character should not supportTextData as it is used in StructuredDescriptiveData context. Currently, supportsTextDat... Andreas Müller
12:53 PM Revision 28c28ef1 (cdmlib): fix #10358 disable supportsTextData for Characters
Andreas Müller
11:58 AM Revision 1cc608d6 (taxeditor): ref #10318: add created/createdBy to supplemental data of term nodes
Katja Luther
11:56 AM Revision db09e264 (cdmlib): ref #10318: add created and createdBy to Dtos
Katja Luther
11:12 AM Revision c9de7555 (cdm-dataportal): adapt tests
Katja Luther
10:55 AM Revision 3cf1952a (cdm-dataportal): adapt tests
Katja Luther

06/22/2023

11:27 PM Revision 6c719fde (cdmlib): ref #9771 add delete option for created and updated
Andreas Müller
11:27 PM Revision dffd2d5d (cdmlib): ref #9771 add handling for externally managed
Andreas Müller
04:59 PM task #10356: Combine Caryophyllales data portals
AM:
jetzt noch Identifier. Grundsätzlich wäre es sehr gut, eine Liste zu haben mit Identifiern und Links die schri...
Andreas Müller
04:56 PM bug #10357: CDMLight fix handling for names used as synonym and accepted taxa
Mails before fix:
KL:
Ich habe den Fehler gefunden, in der Tabelle HomotypicGroup steht:
~~~
= <i>Oncostema</i> <i...
Andreas Müller
01:50 PM bug #10357 (Resolved): CDMLight fix handling for names used as synonym and accepted taxa
Fixed this by checking the accepted taxon of a synonym, if it is the actual processed accepted then the synonym is us... Katja Luther
01:48 PM bug #10357 (Resolved): CDMLight fix handling for names used as synonym and accepted taxa
mail ERS:
Hallo,
ich habe gerade versucht, für die Gattung Oncostema Raf. einen cdm-light Output aus Euro+Med ...
Katja Luther
02:52 PM Revision e2a2dae9 (cdm-dataportal): ref #10322: fix error messages
Katja Luther
02:09 PM Revision a28575d6 (cdm-dataportal): ref #10322: fix error messages
Katja Luther
01:51 PM Revision 42e5a139 (cdmlib): ref #10357: check whether synonym belongs to the actual accepted taxon
Katja Luther
12:20 PM Revision e77cd15b (cdm-dataportal): adapt order of references with originalInfo
Katja Luther
11:53 AM Revision 1dbb0a6a (cdm-dataportal): adapt order of references
Katja Luther
11:14 AM Revision 8088118c (cdm-dataportal): adapt handling of original information and name in source
Katja Luther
09:35 AM Revision 2a2460f5 (cdm-dataportal): adapt cich portal test to new reference formatting (cont.)
Andreas Müller

06/21/2023

11:28 PM task #10356 (Closed): Combine Caryophyllales data portals
For this we clone all genus taxa (they are all published) to a separate branch and move all unpublished species (taxa... Andreas Müller
11:06 PM Revision a2cdcced (cdm-dataportal): adapt cich portal test to new reference formatting
Andreas Müller
11:06 PM Revision 9bf6c39b (cdm-dataportal): cleanup
Andreas Müller
10:42 PM Revision 7691f1da (cdmlib): ref #10322 add originalInfo to sourceDto
Andreas Müller
04:31 PM feature request #10318 (Closed): Add modifier vocabularies from Endara et al
Andreas Müller
03:34 PM feature request #9771: Implement Cdm2Cdm for vocabularies
And make Test running in suite Andreas Müller
02:24 PM Revision e0498bb5 (cdm-dataportal): fix deduplication of footnotes
Katja Luther
01:56 PM Revision 56a0f188 (cdmlib): code cleaning
Katja Luther
01:29 PM Revision 25b225f7 (taxeditor): minor
Katja Luther
01:22 PM Revision 7ffff550 (cdmlib): code cleaning
Katja Luther
01:00 PM Revision 454ed42c (taxeditor): Revert "add unimplemented method"
This reverts commit 8613a7bde57398e005c807c4cffc79443cdba718. Katja Luther
12:56 PM Revision 88963b21 (taxeditor): Merge branch 'develop' of ssh://git@dev.e-taxonomy.eu/var/git/taxeditor.git into develop
Katja Luther
12:36 PM feature request #10335 (Feedback): Allow editing supplemental data for TermNodes
Editing now fully works. Only the created/updated information is still missing. Andreas Müller
12:04 PM bug #10355 (Closed): Caryophyllales Mexico and Caryophyllales Caryophyllales not usable with clean urls
Currently the two portals https://caryophyllales.org/mexico and https://caryophyllales.org/caryophyllales link to the... Katja Luther
10:39 AM Revision c31195af (taxeditor): changes in FormFactory for showing term details in termnode details view
Katja Luther
10:16 AM Revision e76959d0 (taxeditor): show term details in termnode details view
Katja Luther
10:07 AM Revision 33fb8230 (cdmlib): ref #9771 handle incomplete vocabularies during graph import
Andreas Müller
09:42 AM Revision 92daa639 (cdmlib): ref #9771 add Character handling (cont.)
Andreas Müller
09:38 AM feature request #10133 (Resolved): Improve ontology state vocabularies
Andreas Müller

06/20/2023

08:34 PM Revision 6a806a93 (cdmlib): cleanup
Andreas Müller
08:34 PM Revision e966ccba (cdmlib): ref #9771 add Character handling
Andreas Müller
07:11 PM feature request #10322: Use DTOs for portal taxon page (cont.)
Katja Luther wrote:
> * the sourceDto also needs the uuid of the reference to provide the correct uuid for "link to...
Andreas Müller
07:09 PM Revision 2fc4ac4e (cdmlib): ref #10322 add referenceUuid to SourceDto
Andreas Müller
04:36 PM Revision e9c66407 (cdmlib): ref #9771 remove flush for saveAll and saveOrUpdateAll
Andreas Müller
04:35 PM Revision 5430d021 (cdmlib): ref #9771, ref #10133 add state term lists to ontology vocabulary
Andreas Müller
04:34 PM Revision de9a7928 (cdmlib): ref #10320, ref #9771 fixes for Cdm2CdmImportBase
Andreas Müller
03:44 PM Revision d2b165a7 (cdmlib): cleanup
Andreas Müller
01:37 PM Revision bdf65acb (cdm-dataportal): ref #10302: adapt to distribution as DTOs in standard view - continue
Katja Luther
01:03 PM Revision 75332b27 (cdm-dataportal): ref #10302: adapt to distribution as DTOs in standard view - continue
Katja Luther
12:53 PM Revision c870b267 (cdm-dataportal): ref #10302: adapt to distribution as DTOs in standard view - continue
Katja Luther
12:43 PM feature request #10354 (Closed): Show term data in term node details view
copied from #9697
Term data should be visible in the details view of a term node in term tree editing. But they sh...
Andreas Müller
12:38 PM feature request #10353 (New): Implement supplemental data editing for term trees
copied from #9697
as a first step we could show atleast created/updated and id/uuid
Andreas Müller
12:33 PM Revision 012d4ea3 (cdm-dataportal): ref #10302: adapt to distribution as DTOs in standard view - continue
Katja Luther
12:31 PM feature request #9643 (Rejected): New menu in term tree editor should have alternatives for flags
Not so important and difficult to implement due to number of combinations Andreas Müller
11:51 AM Revision 9958f440 (cdm-dataportal): ref #10302: adapt to distribution as DTOs in standard view
Katja Luther

06/19/2023

03:51 PM Revision 6c90f3ae (cdmlib): Revert "Revert "ref #10322 by default use distribution treeDto""
This reverts commit 9d0e7f1b638ba62b1d89a803f53881651b4fa888. Andreas Müller
03:43 PM feature request #10178: Implement fuzzy name matching
All points described by Rees for fuzzy name matching are included except Authors (to be discussed). The algorithm use... Belen Escobari
02:55 PM Revision f0b94864 (cdmlib): ref #10178: query only genus, returns all species
Belen Escobari
11:24 AM Revision fffbf62f (cdmlib): ref #10178: Tests "not exact matches"
Belen Escobari
10:23 AM Revision 31fc2ce7 (cdmlib): ref #10178: fuzzy name searching without Authors
Belen Escobari

06/16/2023

04:37 PM Revision d5f42e6b (cdmlib-apps): adapt version in app-import
Andreas Müller
02:37 PM bug #10352 (New): Changing nom ref in freetext editor and moving name without saving results in missing reference
mail ERS:
ein ungewöhnlicher Fehler, der euch vielleicht interessiert:
wenn ich im Freitexteditor an der nomenk...
Katja Luther
02:19 PM task #4009: consider using jackson as json library
The taxeditor is json-lib free now. Katja Luther
02:01 PM Revision 190b0534 (taxeditor): ref #4009: remove json-lib from build.properties
Katja Luther
02:01 PM Revision ec145531 (taxeditor): ref #4009: remove json-lib from pom and Manifest
Katja Luther
02:00 PM Revision 182591d5 (taxeditor): ref #4009: continue removing json-lib from Taxeditor - adapt
cdmServerInfo Katja Luther
09:51 AM task #10324: Export Caucasus data
MM:
Georgia is reported among distribution for Abies nordmanniana (Steven) Spach without reference. The references...
Andreas Müller
09:36 AM task #10324: Export Caucasus data
ERS:
we did not discuss endemism yesterday. Data on endemism will be important for each checklist.
Which data o...
Andreas Müller
09:44 AM feature request #10351: Geosearch with full taxon tree result, eventually printer friendly
We need to discuss how this should be best implemented. On one side we should generally add a filter for higher taxa... Andreas Müller
09:41 AM feature request #10351 (Duplicate): Geosearch with full taxon tree result, eventually printer friendly
ERS:
im alten E+M-Portal sah die Geo-Suche so aus (und war erst in einem 2. Schritt sichtbar, wenn man schon ein T...
Andreas Müller

06/15/2023

03:32 PM feature request #10335 (Resolved): Allow editing supplemental data for TermNodes
The last commit was reverted, so I think now the ticket should be fixed. Katja Luther
10:41 AM feature request #10335 (Feedback): Allow editing supplemental data for TermNodes
Unfortunately still open as the NPE fix was accidentally reverted. Andreas Müller
02:43 PM Revision 5be101a1 (taxeditor): remove "import vocabulary" because no import available
Katja Luther
02:40 PM Revision 14e35615 (taxeditor): rename GFBio Term Import to Search continue
Katja Luther
02:37 PM Revision 9ea30b0f (taxeditor): rename GFBio Term Import to GFBio Term Search
Katja Luther
01:53 PM Revision 11651c04 (taxeditor): ref #4009: adapt Term Import to jackson
Katja Luther
11:26 AM Revision df617ad6 (taxeditor): ref #4009: add MANIFEST changes to provide jackson library
Katja Luther
11:20 AM Revision 37ad7062 (taxeditor): ref #3440: replace json-lib in biocase provider search
Katja Luther
11:04 AM Revision a70cdf6d (cdm-server): ref #8118 update mysql driver and spring schema version in templatesdatasources.xml for cdmserver
Andreas Müller
10:48 AM Revision 03927c17 (cdmlib): after reverting the last commit, add the actual changes again.
Katja Luther
10:44 AM Revision e424f9fe (cdmlib): Revert "remove unreachable code"
This reverts commit e173c7df9be281cf0ae131161e83587f7a3d0132. Katja Luther
10:16 AM feature request #9502: Implement subarea preference rule and fallback areas for areas with complex hierarchy
still need to cleanup code and copy remaining issues. Andreas Müller
10:14 AM feature request #10350 (New): Implement distribution algorithms to work with Tu, Tu(E) and Tu(A) in Euro+Med
The handling for the areas Tu, Tu(E) and Tu(A) in the area tree is difficult. As Tu(E) is clearly in Europe and Tu(A)... Andreas Müller
09:42 AM feature request #10349 (New): Add Gr+AE(G) und Russian aereas for mosses to the E+M shapefile
This is an open issue for the mosses integration.
This should be done together with #9367 (baltic states).
Andreas Müller
08:49 AM bug #10346 (Closed): Bugs in E+M dataportal 5.38
Andreas Müller

06/14/2023

11:13 PM task #10324 (In Progress): Export Caucasus data
Andreas Müller
10:11 PM Revision 9c23eca2 (cdmlib-apps): ref #10324 add destinations and activator for caucasus exports
Andreas Müller
06:43 PM feature request #10335: Allow editing supplemental data for TermNodes
Andreas Müller wrote in #note-18:
> Andreas Müller wrote in #note-16:
> > Now, no NPE is thrown anymore, but when I...
Katja Luther
06:42 PM feature request #10335 (Resolved): Allow editing supplemental data for TermNodes
Katja Luther
06:14 PM feature request #10348: Handle term synonyms in CDM
AM (during ontology review #10133):
Bei den Synonymen müssen wir nochmal überlegen, wie wir die im Model unterbrin...
Andreas Müller
06:13 PM feature request #10348 (New): Handle term synonyms in CDM
Especially in the descriptive data part (ontology) there are many terms having synonyms. Currently the CDM does not a... Andreas Müller
05:30 PM Revision 5c594834 (cdm-server): Merge branch 'release/5.39.0' into develop
jenkins
05:30 PM Revision 82e6d41e (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
05:29 PM Revision 5a9e945f (cdm-server): updating poms for branch'release/5.39.0' with non-snapshot versions
jenkins
05:29 PM Revision 7bebe16a (cdm-webapp): Merge branch 'release/5.39.0' into develop
jenkins
05:29 PM Revision d8be99c6 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
05:28 PM Revision 5f930b8e (cdm-webapp): updating poms for branch'release/5.39.0' with non-snapshot versions
jenkins
05:28 PM Revision c48837b8 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.39.0
jenkins
05:28 PM Revision e365e399 (cdm-vaadin): Merge branch 'release/5.39.0' into develop
jenkins
05:28 PM Revision abe5fd30 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
05:28 PM Revision f544dd27 (taxeditor): Merge branch 'release/5.39.0' into develop
jenkins
05:28 PM Revision 10ecd7fa (taxeditor): Merge branch 'release/5.39.0'
jenkins
05:25 PM Revision b05504e1 (cdm-dataportal): Merge branch 'release/5.39.0' into develop
jenkins
05:25 PM Revision 00da66d2 (cdm-dataportal): updating poms for branch'release/5.39.0' with non-snapshot versions
jenkins
05:25 PM Revision 93f7a77a (cdm-vaadin): updating poms for branch'release/5.39.0' with non-snapshot versions
jenkins
05:25 PM Revision 1a36279e (cdm-dataportal): release-preparation: production level css
jenkins
05:25 PM Revision 45d908b8 (cdm-vaadin): jenkins bumping cdmlib.version to 5.39.0
jenkins
05:24 PM Revision 08e25085 (cdmlib): Updating develop poms back to pre merge state
jenkins
05:24 PM Revision 32f0a1ff (cdmlib): Merge branch 'master' into develop
jenkins
05:24 PM Revision bbf15289 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
05:24 PM Revision 68bfb080 (cdmlib): Merge branch 'release/5.39.0'
jenkins
05:12 PM Revision eb289d03 (cdmlib): updating poms for branch'release/5.39.0' with non-snapshot versions
jenkins
05:05 PM Revision 1d56b077 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.39.0-SNAPSHOT
jenkins
05:04 PM Revision 0458d280 (cdm-webapp): updating poms for 5.40.0-SNAPSHOT development
jenkins
05:04 PM Revision f8543bf0 (cdm-webapp): updating poms for 5.39.0 branch with snapshot versions
jenkins
05:04 PM Revision 00c765ab (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.40.0-SNAPSHOT
jenkins
05:03 PM Revision 4bf00390 (taxeditor): Updated version in pom / project files to taxeditor version : 5.40.0-SNAPSHOT and cdmlib version : 5.40.0-SNAPSHOT
jenkins
05:03 PM Revision f57425f8 (taxeditor): Updated version in pom / project files to taxeditor version : 5.39.0 and cdmlib version : 5.39.0
jenkins
05:03 PM Revision 427e8053 (cdm-vaadin): jenkins bumping cdmlib.version to 5.39.0-SNAPSHOT
jenkins
05:02 PM Revision bff9618d (cdm-vaadin): updating poms for 5.40.0-SNAPSHOT development
jenkins
05:02 PM Revision fc0c95e0 (cdm-vaadin): updating poms for 5.39.0 branch with snapshot versions
jenkins
05:02 PM Revision 55ba75d9 (cdm-vaadin): jenkins bumping cdmlib.version to 5.40.0-SNAPSHOT
jenkins
05:02 PM Revision 85546f43 (cdm-dataportal): updating poms for 5.40.0-SNAPSHOT development
jenkins
05:02 PM Revision dcaa4258 (cdm-server): updating poms for 5.40.0-SNAPSHOT development
jenkins
04:58 PM Revision 16562146 (cdmlib): updating poms for 5.40.0-SNAPSHOT development
jenkins
04:56 PM feature request #10327 (Closed): IUCN condensed distribution configuration
Andreas Müller
04:54 PM bug #10346 (Resolved): Bugs in E+M dataportal 5.38
This should be fixed and can be closed (but adapt portal before). Andreas Müller
11:37 AM bug #10346 (In Progress): Bugs in E+M dataportal 5.38
I move EUR handling for mosses to #10326 Andreas Müller
04:52 PM feature request #10347: Implement et al. for names in taxon search result
The relevant methods are TaxonListController.doFind() and TaxonServiceImpl.findTaxaAndNames(config).
Andreas Müller
04:48 PM feature request #10347 (New): Implement et al. for names in taxon search result
copied from #10346
via etAlPos parameter similar to #10336
Andreas Müller
04:21 PM task #10326 (In Progress): EuroMed mosses remaining issues
Update areas:
~~~
SELECT deb.id, deb.area_id, deb.createdBy_id, deb.created, deb.feature_id, deb.DTYPE, deb.inDes...
Andreas Müller
01:14 PM Revision 9d0e7f1b (cdmlib): Revert "ref #10322 by default use distribution treeDto"
This reverts commit 2e46c8021c5ce6276203860af3f9e1652c4759b9. Andreas Müller
11:49 AM bug #7107 (Discussed): "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference
Andreas Müller
11:49 AM bug #7107: "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference
Emails via "TSWG L2" search Andreas Müller
11:16 AM feature request #9502 (Resolved): Implement subarea preference rule and fallback areas for areas with complex hierarchy
This is probably fully fixed (except for the new issue of Tu which should go to another ticket). Andreas Müller
10:44 AM Revision 71b97524 (cdmlib): ref #9502 remove tests without value (computed marker)
Andreas Müller
09:58 AM bug #10306 (Worksforme): Layout: Not all functions in Vaadin available
I have no idea what happened. For some time I had major problems with data input.
Currently, I am using PhycoBank da...
Wolf-Henning Kusber
02:37 AM Revision ec4f182d (cdmlib): ref #9502 try to implement multiple parents for CondensedDistributionComposer (fix Cuba tests and some cleanup)
Andreas Müller
02:15 AM Revision 8ac72493 (cdmlib): ref #9502 fix handling for multiple parents in distribution filter (continue fix)
Andreas Müller
02:00 AM Revision cfaa3fc2 (cdmlib): ref #9502 try to implement multiple parents for CondensedDistributionComposer (still needs cleanup)
Andreas Müller
01:58 AM Revision fadae8f5 (cdmlib): ref #9502 fix handling for multiple parents in distribution filter (try to fix test)
Andreas Müller

06/13/2023

05:16 PM Revision 4f6fd566 (cdmlib): cleanup
Andreas Müller
03:58 PM feature request #10341: Add source type "internal"
Adapted the comparator for OriginalSourceType, now PrimaryTaxonomicSource, PrimaryMediaSource are always the first tw... Katja Luther
03:41 PM Revision 87c8afe7 (taxeditor): ref #10341: adapt comparator
Katja Luther
12:35 PM Revision 3eb66b32 (cdmlib): cleanup
Andreas Müller
12:34 PM Revision f426088c (cdmlib): ref #9502 fix handling for multiple parents in distribution filter
Andreas Müller
10:45 AM Revision 02d8cf93 (cdmlib): ref #9502 add second method for loading distribution tree based on term tree (incl. annotations) - fix NPE
Andreas Müller
10:13 AM Revision b0b71d13 (cdmlib): ref #9502 add second method for loading distribution tree based on term tree (incl. annotations)
Andreas Müller
09:55 AM Revision fbbc99e4 (cdmlib): Allow retrieving a map for terms included in a term tree
Andreas Müller
09:48 AM feature request #10335: Allow editing supplemental data for TermNodes
Andreas Müller wrote in #note-16:
> Now, no NPE is thrown anymore, but when I store an annotation with no type the t...
Andreas Müller
09:47 AM feature request #9771 (Resolved): Implement Cdm2Cdm for vocabularies
This is more or less implemented. But check comment on problems with users above.
And create new ticket for issues...
Andreas Müller
09:43 AM feature request #10327: IUCN condensed distribution configuration
finetuning should be implemented now and ticket can be closed after final review. Andreas Müller
09:43 AM feature request #10327: IUCN condensed distribution configuration
ERS: zu IUCN
es geht mir vor allem um die Lesbarkeit für die möglicherweise unbedarften Nutzer. Der String sollte ...
Andreas Müller
09:41 AM Revision 50f77133 (cdmlib): ref #10346, ref #10327 fine tuning for IUCN cond distr str for subarea handling
Andreas Müller

06/12/2023

10:54 PM Revision ad4ee235 (cdmlib): cleanup
Andreas Müller
07:06 PM Revision ffe8e47c (cdmlib): cleanup
Andreas Müller
06:44 PM Revision 777ad2c3 (cdmlib): cleanup
Andreas Müller
05:43 PM bug #10346: Bugs in E+M dataportal 5.38
ERS: zu IUCN
es geht mir vor allem um die Lesbarkeit für die möglicherweise unbedarften Nutzer. Der String sollte ...
Andreas Müller
02:50 PM bug #10306 (Feedback): Layout: Not all functions in Vaadin available
Andreas Müller
02:50 PM bug #10306: Layout: Not all functions in Vaadin available
It is a bit unclear what really needs to be done here. Can you summerize how the expected behavior should look like a... Andreas Müller
02:44 PM bug #10339: Array to string conversion in check_plain() method on synonym page
This is not shown anymore as it was fixed as far as I remember. If this ticket should stay open can you add some more... Andreas Müller
02:42 PM Revision 3963d2c1 (taxeditor): ref #10335: fix NPE for annotations without type
Katja Luther
12:46 PM Revision dde9d889 (cdm-dataportal): fix missing mouse over with status
Katja Luther
09:50 AM Revision e173c7df (cdmlib): remove unreachable code
Katja Luther
 

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