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From 07/01/2022 to 07/30/2022

07/30/2022

11:12 PM feature request #10082 (Closed): Improve formatting for pro parte misapplications
I checked on https://www.europlusmed.org/cdm_dataportal/taxon/63fead7a-662a-4082-9503-c6ea994c2049 and it looks fine. Andreas Müller
12:22 AM feature request #10082 (Resolved): Improve formatting for pro parte misapplications
Now it works in the dataportal, too:
![](clipboard-202207300021-sgo4r.png)
Katja, can you please review.
Andreas Müller
10:51 PM bug #10007 (Resolved): fix reindex jobs on jobber
This is more or less done. Maybe still need to do some cleanup. Andreas Müller
09:49 PM bug #9979: Flora Greece shows large images
Andreas Müller wrote in #note-11:
> The method findRepresentations($media) uses strict=true for thumbnail retrieval...
Andreas Müller
07:49 PM bug #9979 (In Progress): Flora Greece shows large images
Andreas Müller
06:53 PM bug #9979: Flora Greece shows large images
The method findRepresentations($media) uses strict=true for thumbnail retrieval. This is dangerous, because in this ... Andreas Müller
06:46 PM bug #9979: Flora Greece shows large images
The service which is called by the portal page https://api.cybertaxonomy.org/flora-greece/portal/taxon/8e75f1a8-e7f9-... Andreas Müller
09:09 PM Revision 90bd882f (cdm-server): Merge branch 'release/5.32.0' into develop
jenkins
09:09 PM Revision 4acfd0c1 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
09:08 PM Revision 203aade6 (cdm-server): updating poms for branch'release/5.32.0' with non-snapshot versions
jenkins
09:06 PM Revision 093822c6 (cdm-webapp): Merge branch 'release/5.32.0' into develop
jenkins
09:06 PM Revision 38074bbf (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
09:05 PM Revision 3df7d64e (cdm-webapp): updating poms for branch'release/5.32.0' with non-snapshot versions
jenkins
09:05 PM Revision 66be2647 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.32.0
jenkins
08:59 PM Revision 086ca01c (cdm-vaadin): Merge branch 'release/5.32.0' into develop
jenkins
08:59 PM Revision 7bed910a (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
08:56 PM Revision cebafd76 (cdm-vaadin): updating poms for branch'release/5.32.0' with non-snapshot versions
jenkins
08:56 PM Revision 97775d78 (cdm-vaadin): jenkins bumping cdmlib.version to 5.32.0
jenkins
08:56 PM Revision d73c0ce8 (cdm-dataportal): Merge branch 'release/5.32.0' into develop
jenkins
08:56 PM Revision 7b01bcab (cdm-dataportal): updating poms for branch'release/5.32.0' with non-snapshot versions
jenkins
08:55 PM Revision c369cd09 (cdm-dataportal): release-preparation: production level css
jenkins
08:55 PM Revision f28c4ae0 (taxeditor): Merge branch 'release/5.32.0' into develop
jenkins
08:55 PM Revision 2c78f50b (taxeditor): Merge branch 'release/5.32.0'
jenkins
08:50 PM Revision 6168faeb (cdmlib): Updating develop poms back to pre merge state
jenkins
08:50 PM Revision 47168d98 (cdmlib): Merge branch 'master' into develop
jenkins
08:50 PM Revision 659f4aae (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
08:50 PM Revision 970ba886 (cdmlib): Merge branch 'release/5.32.0'
jenkins
08:33 PM Revision 24196586 (cdmlib): updating poms for branch'release/5.32.0' with non-snapshot versions
jenkins
08:28 PM Revision 29925b4c (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.32.0-SNAPSHOT
jenkins
08:28 PM Revision b7cfa781 (cdm-webapp): updating poms for 5.33.0-SNAPSHOT development
jenkins
08:28 PM Revision 8ab15c36 (cdm-webapp): updating poms for 5.32.0 branch with snapshot versions
jenkins
08:28 PM Revision 1885ffe3 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.33.0-SNAPSHOT
jenkins
08:27 PM bug #10033: For new FeatureTree only uuid is shown in dataportal
If this is fixed already please add it to the release notes https://dev.e-taxonomy.eu/redmine/projects/edit/wiki/Rele... Andreas Müller
08:27 PM Revision aa965bd8 (taxeditor): Updated version in pom / project files to taxeditor version : 5.33.0-SNAPSHOT and cdmlib version : 5.33.0-SNAPSHOT
jenkins
08:27 PM Revision 6d39f34f (taxeditor): Updated version in pom / project files to taxeditor version : 5.32.0 and cdmlib version : 5.32.0
jenkins
08:26 PM Revision 54241228 (cdm-vaadin): jenkins bumping cdmlib.version to 5.32.0-SNAPSHOT
jenkins
08:26 PM Revision 7ba7b82c (cdm-vaadin): updating poms for 5.33.0-SNAPSHOT development
jenkins
08:26 PM Revision b5243db3 (cdm-vaadin): updating poms for 5.32.0 branch with snapshot versions
jenkins
08:26 PM Revision b3141578 (cdm-vaadin): jenkins bumping cdmlib.version to 5.33.0-SNAPSHOT
jenkins
08:26 PM Revision b69aaf5b (cdm-dataportal): updating poms for 5.33.0-SNAPSHOT development
jenkins
08:26 PM Revision 5fe24a67 (cdm-server): updating poms for 5.33.0-SNAPSHOT development
jenkins
08:23 PM Revision f3f9d5f9 (cdmlib): updating poms for 5.33.0-SNAPSHOT development
jenkins
08:23 PM Revision 72bf768e (cdmlib): updating poms for 5.32.0 branch with snapshot versions
jenkins
07:54 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
Before fully closing also check #5655 Andreas Müller
04:20 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
Dataportal and cdmlight updated commit:cdm-dataportal|bf522fd0e17 and commit:f951f09989936db85
I created a temporary...
Andreas Müller
07:10 PM Revision b11ee7b3 (taxeditor): adapt addGrandChildPolytomousKeyNode test but still ignored
Andreas Müller
07:10 PM Revision ed20c18b (taxeditor): reenable readAllPolytomousKeys test
Andreas Müller
07:09 PM Revision c2b55770 (taxeditor): cleanup
Andreas Müller
06:59 PM Revision 6df5928c (cdmlib): cleanup
Andreas Müller
06:58 PM Revision 499e4576 (cdm-dataportal): ref #9979 remove strict size restriction for thumbnails
Andreas Müller
06:57 PM Revision 4a3a8785 (cdm-dataportal): cleanup
Andreas Müller
05:13 PM task #10067: Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
Andreas Müller wrote in #note-36:
> Should be resolved. All open issues moved to #10104.
>
> Still need to check ...
Andreas Müller
05:05 PM Revision 4fccbc69 (cdmlib): ref #10067 make typed query an hibernate query
Andreas Müller
05:05 PM Revision edf29af6 (cdmlib): ref #10067 test if Query<Object[]> works
Andreas Müller
05:04 PM Revision 114cd073 (cdmlib): cleanup
Andreas Müller
04:32 PM Revision c1d1ac33 (cdm-vaadin): ref #10037 add logging to account registration
Andreas Müller
04:19 PM feature request #5655: [DISCUSS] Do we need further "non xxx" relations?
I added "is non" to dataportal output commit:cdm-dataportal|bf522fd0e17. Can you please check for cdmlight and close ... Andreas Müller
03:35 PM Revision 05aa14e7 (cdm-dataportal): ref #10096 fix taxon node status label in dataportal test
Andreas Müller
03:31 PM Revision f951f099 (cdmlib): ref #10083 add avoids homonym of to nonRelNames in cdmlight
Andreas Müller
03:30 PM Revision 8c9ff01f (cdmlib): fix trim of nonRelNames
Andreas Müller
03:30 PM Revision 5f97d803 (cdmlib): cleanup
Andreas Müller
03:19 PM Revision bf522fd0 (cdm-dataportal): ref #10083 add "avoids homonym" and "is not" to dataportal settings
Andreas Müller
02:08 PM bug #10111 (In Progress): Data loss e.g. when entering type information
Andreas Müller
02:08 PM bug #10111: Data loss e.g. when entering type information
AM:
Hallo Walter,
ich habe mir das jetzt mal angesehen, konnte es erst nicht, dann ein paar Mal quasi direkt hi...
Andreas Müller
12:31 AM bug #10111: Data loss e.g. when entering type information
That the "Source" element is not shown (last mail from WGB) is a known issue handled at #10080 Andreas Müller
12:30 AM bug #10111 (Resolved): Data loss e.g. when entering type information
Sometimes type information gets lost when entered without immediate saving in type designation element
WGB:
mir...
Andreas Müller
12:23 PM Revision d643a800 (taxeditor): fix NPE in InspectSessionsDialog
Andreas Müller
11:13 AM Revision 4a879017 (cdmlib): add PermissionClass for TextualTypeDesignation
Andreas Müller
11:13 AM Revision 7f5726f4 (cdmlib): move object name to beginning in CdmEntityInfo.label
Andreas Müller
11:12 AM Revision 1f8892fb (cdmlib): cleanup
Andreas Müller
10:49 AM Revision b12da30d (taxeditor): cleanup
Andreas Müller
10:32 AM Revision 7fefafde (taxeditor): sort entities by fieldname in InspectSessionsDialog
Andreas Müller
10:30 AM Revision fb74317f (cdmlib): move fieldName to beginning in CdmEntityInfo.label
Andreas Müller
08:58 AM Revision 95f83e6e (cdmlib): ref #10096 adapt cdmLight tests to use current TaxonNodeStatus.label
Andreas Müller
08:48 AM Revision b8fec484 (cdm-dataportal): ref #10096 adapt dataportal tests to use current TaxonNodeStatus.label
Andreas Müller
08:42 AM Revision ba55972b (cdmlib): ref #10096 add short label to TaxonNodeStatus
Andreas Müller
08:39 AM Revision 8a8db6f7 (cdmlib): ref #10096 use longer form for TaxonNodeStatus labels
Andreas Müller
01:27 AM Revision 9a7edb27 (cdm-dataportal): ref #10096 adapt some failing tests related to TaxonNodeStatus label and ordering (cont.)
Andreas Müller
01:12 AM Revision 2c16778b (cdm-dataportal): cleanup
Andreas Müller
01:12 AM Revision b7997734 (cdm-dataportal): ref #10096 adapt some failing tests related to TaxonNodeStatus label and ordering
Andreas Müller
12:09 AM feature request #10110: Show barcode also on PreservedSpecimen General details element not only on specific element
Please review. Andreas Müller
12:05 AM feature request #10110 (Resolved): Show barcode also on PreservedSpecimen General details element not only on specific element
Applied in changeset commit:taxeditor|bbebd47509e2bf94b059147209e53209836558b6. Andreas Müller
12:05 AM Revision bbebd475 (taxeditor): fix #10110 move barcode to general page
Andreas Müller
12:04 AM Revision bc54c30f (taxeditor): cleanup
Andreas Müller

07/29/2022

11:51 PM feature request #10110 (Closed): Show barcode also on PreservedSpecimen General details element not only on specific element
WGB:
in diesem Formular ist der barcode erst auf der letzten Seite zu finden; im Bulk Editor und bei der EIngabe v...
Andreas Müller
10:39 PM feature request #10082: Improve formatting for pro parte misapplications
In dataportal it does not work yet as symbol is always rendered to "left" and "block", not "inline". I try new tagtyp... Andreas Müller
09:29 PM feature request #10082: Improve formatting for pro parte misapplications
In TaxEditor it works Andreas Müller
08:15 PM feature request #10082 (In Progress): Improve formatting for pro parte misapplications
implemented in formatter, still need to check how this looks like on a taxon page Andreas Müller
10:35 PM Revision 8436c9db (cdmlib): use inlineSymbol not symbol for splitted symbol
Andreas Müller
10:35 PM Revision 0419bfc2 (cdmlib): cleanup
Andreas Müller
09:28 PM Revision c41902de (cdmlib): cleanup and javadoc
Andreas Müller
09:27 PM Revision a8eb51e8 (cdmlib): ref #10082 split MAN pro parte symbol in formatter (cont.)
Andreas Müller
09:00 PM Revision c5e7d4d0 (taxeditor): ref #10096 fix placement notes label in default messages
Andreas Müller
08:53 PM bug #10084 (Resolved): Adding a new specimen to character matrix fails
It looked to me as you did not yet revert, so I tried to do this by commit:78d9e692 . Please review. I already checke... Andreas Müller
08:49 PM task #10109 (New): Investigate best practice for HQL with enumset
Sine #7957 we use EnumSets as types. Hibernate mapping is implemented in EnumSetUserType class. The open issue here i... Andreas Müller
08:14 PM Revision 7d75bc7a (cdmlib): ref #10082 split MAN pro parte symbol in formatter
Andreas Müller
08:14 PM Revision ced7583b (cdmlib): cleanup
Andreas Müller
07:40 PM Revision 7fff6c03 (cdmlib): cleanup (rename reverse->inverse)
Andreas Müller
07:30 PM Revision ca31f2e6 (cdmlib): ref #10096 add correct UTF8 for status unresolved
Andreas Müller
07:29 PM Revision c22f14af (cdmlib): javadoc
Andreas Müller
07:13 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
Has this been reported by a user? If yes please add as watcher. Andreas Müller
07:13 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
I got an NPE when changing to no status:
~~~
last remote method : https://test.e-taxonomy.eu:443/cdmserver/rem_co...
Andreas Müller
07:07 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
To me it happens also after changing to other designation status therefore I adapted the title.
The workarounds se...
Andreas Müller
07:03 PM Revision 16512021 (taxeditor): ref #10080 fix NPE when changing TypeDesignationStatus to NO_SELECTION
Andreas Müller
07:02 PM Revision 121b5aa2 (taxeditor): cleanup
Andreas Müller
06:26 PM bug #10078 (Resolved): Symbol and details view title of misapplied name type is not the same as shown in the type combo element
I give this to me for updating data after the release. Give back to KL for cleanup and close afterwards. Andreas Müller
06:21 PM bug #9007 (Resolved): Enable i18n support for media description UI
I guess this is solved and can be closed? Remaining issues copied to new tickets. Please move back to original milest... Andreas Müller
06:19 PM bug #10108 (Closed): Description for MediaSpecimen not shown even if it exists (i18n)
copied from #9007#note-11
* the description is not available at all (but there might be data if the media reused a...
Andreas Müller
06:16 PM bug #10107: i18n bug when editing media not having a default language title
priority needs to be discussed Andreas Müller
06:15 PM bug #10107 (Closed): i18n bug when editing media not having a default language title
copied from #9007#note-11
i18n editing of the title is not available here, and to me it looks like when editing t...
Andreas Müller
06:05 PM feature request #8777: Make visiblity of CDM Source configurable
Query to find example:
~~~
SELECT *
FROM OriginalSourceBase osb INNER JOIN DescriptionElementBase deb ON deb.id ...
Andreas Müller
03:38 PM feature request #8777 (Resolved): Make visiblity of CDM Source configurable
Andreas Müller wrote in #note-5:
> Andreas Müller wrote:
> > ... hmm, maybe an even better solution is to show the ...
Andreas Müller
05:47 PM bug #10101: Correct mapping and handling of sorted tree structures
Finding duplicates:
~~~
SELECT pkn.key_id, pkn.parent_id, pkn.sortindex, COUNT(*) AS n
FROM PolytomousKeyNode pkn
GR...
Andreas Müller
02:15 PM bug #10101: Correct mapping and handling of sorted tree structures
Comment from onMerge in PostMergeEntityListener:
~~~
Added in context of working on #10101, it was unclear to me...
Andreas Müller
02:05 PM bug #10101: Correct mapping and handling of sorted tree structures
I removed the HHH_9751_Util class as it is currently not used anymore, please recreate from commit:cb923587ce746 and ... Andreas Müller
01:36 PM bug #10101 (In Progress): Correct mapping and handling of sorted tree structures
I added tests for mergeDetached and saveDetached on nodes and trees and with removal and move of nodes to PolytomousK... Andreas Müller
03:39 PM Revision 6f5e7139 (taxeditor): ref #8777 try to filter CDM Source in Original Sources if no data exist (it is read only)
Andreas Müller
03:33 PM Revision 6aef0d5d (taxeditor): remove deproxy
Andreas Müller
03:31 PM Revision 09abc656 (taxeditor): ref #10101 remove HHH_9751 from TaxEditor
Andreas Müller
03:29 PM feature request #10081 (Resolved): Show name in source for sec ref of accepted taxon
Please still remove the whitespace (see #note-13 and review the cdmlight implementation). Then we can close the ticket. Andreas Müller
03:26 PM bug #10034 (Closed): Flat feature tree throws exception
Andreas Müller
03:26 PM bug #10034: Flat feature tree throws exception
Moved open issues to #10053 and close this ticket. Andreas Müller
03:25 PM bug #10106 (New): Open issues from feature tree editing
copied from #10034#note-7
However, the labeling of the tree still behaves strange sometimes. If you add a child th...
Andreas Müller
03:20 PM Revision caafa683 (taxeditor): ref #10096 use symbol for taxon node status, not ASCII
Andreas Müller
03:18 PM Revision f8bc707d (taxeditor): cleanup
Andreas Müller
03:09 PM task #10072: Upgrade fully to log4j2
I also had problems installing the correct logging when running cdmlib test in IDE (here tests in cdmlib-services). T... Andreas Müller
03:08 PM task #10072: Upgrade fully to log4j2
TaxEditor issue moved to new ticket #10105. Andreas Müller
03:07 PM bug #10105 (New): Fix logging in TaxEditor after migration to log4j 2
for details see #10072#note-15
There are error message when starting the editor. Also in tests.
log4j-slf4j-im...
Andreas Müller
03:03 PM bug #10033 (Feedback): For new FeatureTree only uuid is shown in dataportal
Are there still open issues? Andreas Müller
02:57 PM bug #10071 (Feedback): TaxonNodeDtos should be created directly not from taxon objects
Is this fixed? Andreas Müller
02:55 PM Revision 01d4b08d (cdmlib): fix TaxonNodeServiceImplTest.testSaveDetached
Andreas Müller
02:36 PM task #10067 (Resolved): Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
Should be resolved. All open issues moved to #10104.
Still need to check the
~~~
TypedQuery<String[]>
~~~
issue.
Andreas Müller
02:34 PM task #10104 (New): Cleanup after hibernate v5.4.33 migration
for details see #10067 . Some cleanup is still needed.
Open issues are:
* Check for Queries with TypeQuery<Stri...
Andreas Müller
02:17 PM Revision d80bd653 (cdmlib): ref #10067 adapt KeywordAnalyzer handling to v5.4.33 (only used for TaxonName.nameCache)
Andreas Müller
02:13 PM Revision 1aa6c88f (cdmlib): ref #10101 delegat onMerge(event) to onMerge(event, alreadyCopied) in PostMergeEntityListener
Andreas Müller
02:06 PM task #8127: [Reminder] to check if Hibernate Null Value bug still exists
I removed the HHH_9751_Util class as it is currently not used anymore, please recreate from commit:cb923587ce746 and ... Andreas Müller
12:54 PM task #8127 (Discussed): [Reminder] to check if Hibernate Null Value bug still exists
The PolytoumsKey loading issue seems to be solved in TaxEditor by fixes done for #10101. However, the tests created f... Andreas Müller
02:04 PM Revision cb923587 (cdmlib): ref #10101, ref #8127, ref #3722, ref #5536 remove HHH_9751_Util class as it is not used anymore
Andreas Müller
02:01 PM Revision 500e20cf (cdmlib): cleanup
Andreas Müller
02:00 PM Revision e5477781 (cdmlib): ref #10101 removed cascade from TermNode.parent, not needed and probably also not correct
Andreas Müller
01:57 PM Revision 3ad25ffd (cdmlib): ref #10101 removed cascade from TermRelationBase.graph, not needed and probably also not correct
Andreas Müller
01:55 PM Revision 520f2d6d (cdmlib): ref #10101 add testSaveDetachedWithMove test to PolytomousKeyNodeServiceTest
Andreas Müller
01:54 PM Revision 78d9e692 (cdmlib): ref #10084 revert filtering by description type in query, needs further investigation
Andreas Müller
01:54 PM Revision 13b70d09 (cdmlib): ref #10084 adapt query to TypedQuery
Andreas Müller
01:53 PM Revision ecbb164c (cdmlib): cleanup
Andreas Müller
01:25 PM Revision 63e1c600 (cdmlib): ref #10101 add saveDetached tests to PolytomousKeyNodeServiceTest (and replace save by merge in other tests)
Andreas Müller
01:23 PM Revision d5e92c4b (cdmlib): ref #10101 add (partly ignored) tests to TaxonNodeServiceImplTest and TermNodeServiceImplTest
Andreas Müller
12:38 PM Revision 4e5b8da0 (cdmlib): ref #10096 adapt cdmlight test to longer taxon node status labels
Andreas Müller
12:34 PM feature request #10103 (New): Add "Included" as default status to taxon node status
Needs update script for existing data.
For details see #10096
Andreas Müller
12:32 PM feature request #10096: Add new TaxonNode status and make notes field more general
AM:
ich habe das jetzt mal implementiert. Es sollte im nächsten Release (vermutlich noch diese Woche) drin sein.
...
Andreas Müller
12:08 PM Revision 378498f3 (cdmlib): ref #10096 add long labels to TaxonNodeStatus and add commented default status
Andreas Müller
11:09 AM bug #10102 (Closed): Non-names formatted in italics
WGB:
mir ist eben dann auch aufgefallen, dass die „non“-Namen nicht kursiv formatiert werden:
− <i>Achyranthes<...
Andreas Müller
01:04 AM Revision b45cb977 (cdmlib): cleanup
Andreas Müller

07/28/2022

10:13 PM Revision 4efb0c4a (cdmlib): ref #10101 catch and log no-session exception in PostMergeEntityListener instead of removing initialization completely
Andreas Müller
09:34 PM Revision ccd3aaab (cdmlib): ref #10101 again preliminary remove children initialization in PostMergeEntityListener
Andreas Müller
08:59 PM Revision 4263e86b (cdmlib): return false in finally again, just in case this is important
Andreas Müller
08:36 PM Revision 031c8642 (cdmlib): ref #10101 add the childNodes touche for TaxonNode and TermNode again in PostMergeEntityListener
Andreas Müller
08:02 PM Revision 9f707aab (cdmlib): ref #10101 preliminary remove children initialization in PostMergeEntityListener
Andreas Müller
07:27 PM Revision 96326c59 (cdmlib): ref #10101 adapt PolytomousKeyNodeServiceTest to new orphaned delete method in services
Andreas Müller
07:20 PM Revision 472c6b76 (cdmlib): cleanup and allow merge with objectsToRemove in all services
Andreas Müller
06:24 PM Revision 2c08ec06 (cdmlib): ref #10101 add sortindex fix to taxon node and term node, too
Andreas Müller
06:23 PM Revision 93d9d454 (cdmlib): ref #10101 fix sortindex gaps in polytomous key merge
Andreas Müller
06:08 PM Revision 53f3deea (cdmlib): add cleansweep to PolytomousKeyNodeServiceTest tests
Andreas Müller
05:52 PM Revision 64ac4a3d (cdmlib): javadoc
Andreas Müller
05:52 PM Revision cf36c59d (cdmlib): ref #10101 fix possbile null value in refreshNodeNumbering
Andreas Müller
05:33 PM bug #10101: Correct mapping and handling of sorted tree structures
Code comment from PostMergeEntityListener.java:
~~~
// #10101 the following code tried to handle orphanRemoval for ...
Andreas Müller
09:25 AM bug #10101 (In Progress): Correct mapping and handling of sorted tree structures
We currently have 3 sorted tree structures in the CDM: Classifications, TermTrees and PolytomousKeys.
The correct ...
Andreas Müller
05:28 PM Revision e1284d9a (cdmlib): cleanup
Andreas Müller
05:26 PM Revision 794f69f0 (cdmlib): javadoc
Andreas Müller
05:25 PM Revision e6cd93a9 (cdmlib): ref #10101 add commented implementation for trying to handle orphan removal in the PostMergeEntityListener
Andreas Müller
04:48 PM Revision ae0e8692 (cdmlib): handle non-persisted objects in delete()
Andreas Müller
04:47 PM Revision 8f79b3aa (cdmlib): ref #3722, ref #8127, ref #5536, ref #10101 adapt test for removing PKNode and add new test for moving node and add LIE handling for node removal
Andreas Müller
04:45 PM Revision 0e628c63 (cdmlib): cleanup
Andreas Müller
04:40 PM Revision 28f29426 (cdmlib): add logging for exceptions in CdmPreDataChangeListener
Andreas Müller
02:05 PM Revision 8b07f256 (cdmlib): ref #10101 add some javadoc
Andreas Müller
10:50 AM Revision 60a7c724 (cdmlib): cleanup
Andreas Müller
12:47 AM Revision 473eee48 (cdmlib): ref #3722, ref #8127, ref #5536 preliminary make TermNode.children not orphanRemoval again
Andreas Müller
12:47 AM Revision edd423cc (cdmlib): cleanup
Andreas Müller
12:29 AM Revision a405f029 (cdmlib): ref #3722, ref #8127, ref #5536 remove sortIndex field check from SortIndexUpdaterWrapperTest
Andreas Müller

07/27/2022

11:59 PM Revision 322a51fd (cdmlib): cleanup
Andreas Müller
11:44 PM Revision 7161f1ec (cdmlib): ref #3722, ref #8127, ref #5536 preliminary make TaxonNode.children not orphanRemoval again
Andreas Müller
09:26 PM Revision 3bfeb049 (cdmlib): ref #3722, ref #8127, ref #5536 remove sortindex in jaxb annotations for tree lists
Andreas Müller
09:08 PM Revision 88b53ac2 (cdmlib): ref #3722, ref #8127, ref #5536 add test for PKNode merge
Andreas Müller
09:06 PM Revision 84e9fe95 (cdmlib): cleanup and javadoc
Andreas Müller
09:04 PM Revision fda2a953 (cdmlib): remove cascade to parent and key
Andreas Müller
09:02 PM Revision 221668f1 (cdmlib): add cascade delete to PK->PKNroot
Andreas Müller
08:56 PM Revision c8d47a7c (cdmlib): ref #3722, ref #8127, ref #10067, ref #5536 add orphan removal to ordered lists to avoid null value, sortindex and record not deleted issues
Andreas Müller
08:44 PM Revision 6e43909b (cdmlib): move children up to parent in code
Andreas Müller
02:55 PM Revision 688d7e78 (cdmlib): cleanup
Andreas Müller
02:52 PM Revision 54e0164b (cdmlib): ref #8127 reenable null value removal in Util class
Andreas Müller
10:09 AM task #8127 (Feedback): [Reminder] to check if Hibernate Null Value bug still exists
Issue is not yet solved. There are still issues when merging/loading PolytomousKeyNodes, see #3722#note-14 and follow... Andreas Müller
09:38 AM Revision 5e19d1f7 (cdmlib): ref #3722, ref #8127, ref #10067 fully remove sortindex and OrderBy comments
Andreas Müller
09:36 AM Revision f0562fe4 (cdmlib): cleanup
Andreas Müller
09:13 AM task #3722 (Closed): Using @OrderColumn does not work in trees
This ticket is more about @OrderColumn generally does not work which is not the case. The remaining issue is a NULL-V... Andreas Müller
01:48 AM feature request #10082 (Discussed): Improve formatting for pro parte misapplications
Andreas Müller
01:04 AM Revision 37eb6de9 (cdmlib): ref #10096 unified taxon node status handling during taxon node comparison (cont. II)
Andreas Müller
12:11 AM Revision 5e11051d (cdmlib): cleanup
Andreas Müller
12:11 AM Revision 97bed710 (cdmlib): ref #10096 unified taxon node status handling during taxon node comparison (cont.)
Andreas Müller

07/26/2022

11:55 PM Revision 00a1c85b (cdmlib): ref #10096 unified taxon node status handling during taxon node comparison
Andreas Müller
11:54 PM Revision 92ccbc3f (cdmlib): cleanup with minor change in TaxonNodeNaturalComparator
Andreas Müller
10:45 PM feature request #10057 (Resolved): Add "accessed" field to OriginalSourceBase
This is implemented now in model and first implementations for OriginalSourceFormatter and TaxonBaseDefaultCacheStrat... Andreas Müller
10:37 PM Revision 3bc75586 (taxeditor): ref #10057 allow accessed for all dynamic references
Andreas Müller
10:36 PM Revision 29de0400 (taxeditor): ref #10057 add accessed to OriginalSourceElements (still without update when citation type changes)
Andreas Müller
10:34 PM Revision 34445b96 (taxeditor): move handleEvent to base class in AbstractOriginalSourceElement
Andreas Müller
10:30 PM Revision 4c59a7ab (taxeditor): cleanup
Andreas Müller
09:33 PM Revision d8064d70 (taxeditor): fix externalLinks comparator (uri1 was compared to itself => always equal) and simplify it
Andreas Müller
09:27 PM Revision 79c0d0e3 (taxeditor): cleanup
Andreas Müller
08:32 PM Revision 11b37ac4 (cdmlib): ref #10057 fix detail only in OriginalSourceFormatter
Andreas Müller
08:07 PM Revision c024175d (cdmlib): ref #10057 adapt TaxonBaseDefaultCacheStrategy to secSource.accessed
Andreas Müller
07:52 PM Revision 4ff0780d (cdmlib): ref #10057 adapt OriginalSourceFormatter to source.accessed (partly preliminary)
Andreas Müller
07:51 PM Revision 91b8f506 (cdmlib): ref #10057 add IDynamicReference
Andreas Müller
07:48 PM Revision 23a7acba (cdmlib): cleanup
Andreas Müller
04:21 PM feature request #10096: Add new TaxonNode status and make notes field more general
@Katja: can you please also have a look why there are 3 messages.properties that seem to hold the same values (in tax... Andreas Müller
04:18 PM feature request #10096 (Resolved): Add new TaxonNode status and make notes field more general
This should be fixed now. Katja, can you please review when back.
Please also have a look to the changes in TaxEdi...
Andreas Müller
12:57 PM feature request #10096 (In Progress): Add new TaxonNode status and make notes field more general
Status added and cdmlight adapted. Still need to test in taxeditor and dataportal. Andreas Müller
11:05 AM feature request #10096: Add new TaxonNode status and make notes field more general
WGB:
ich habe eine Diskussion aus dem Mai 2020 wieder aufgegriffen, da ich dringend eine Erweiterung des Placement...
Andreas Müller
10:58 AM feature request #10096: Add new TaxonNode status and make notes field more general
For details see attachement. Andreas Müller
04:15 PM Revision 847947ba (taxeditor): cleanup
Andreas Müller
04:15 PM Revision 75f1593a (taxeditor): ref #10096 allow notes for all taxon nodes and rename STATUS_NOTES to PLACEMENT_NOTES
Andreas Müller
03:44 PM task #10100 (New): Rename statusNote into placementNote in TaxonNode
... for details see #10096
This is the model change ticket only.
Andreas Müller
01:42 PM Revision 52369fe9 (cdmlib): cleanup
Andreas Müller
01:41 PM Revision dfc2be4b (cdmlib): ref #10096 fix cdmlight export test for taxon node status
Andreas Müller
01:04 PM Revision 1a15c467 (cdmlib): ref #10096 fix placement status and handle missing status as null (not "included")
Andreas Müller
01:02 PM Revision f2e4d29b (cdmlib): ref #10096 add placement status to cdmlight export as string
Andreas Müller
12:59 PM Revision e9d963ac (cdmlib): ref #10096 add excluded only to cdmlight export
Andreas Müller
12:56 PM Revision 4b7eaca0 (cdmlib): ref #10096 adapt cdmlight to new taxon node status and rename status notes to placement notes
Andreas Müller
12:55 PM Revision 271e9937 (cdmlib): ref #10096 add new taxon node status to TaxonNodeStatus and TaxonNode getters
Andreas Müller
12:54 PM Revision efebc4fc (cdmlib): javadoc and cleanup
Andreas Müller
10:16 AM task #10099 (New): Try to use log4j instead of logback in CDM server
To avoid another framework on the classpath. Maybe this is possible now with log4j 2.
See eu.etaxonomy.cdm.server....
Andreas Müller
10:10 AM task #10072: Upgrade fully to log4j2
There is still an issue with log4j-slf4j-impl in TaxEditor. For some reason it is not recognized as existing library ... Andreas Müller
10:03 AM Revision 48155f47 (taxeditor): ref #9359 revert to older JavaAPIforKml in taxeditor (cont.)
Andreas Müller
12:26 AM Revision 649e1510 (taxeditor): ref #9359 revert to older JavaAPIforKml in taxeditor
Andreas Müller
12:19 AM Revision a5947b9d (cdmlib): ref #9359 finally revert JavaAPIforKml again
Andreas Müller

07/25/2022

11:55 PM Revision d35fdd42 (cdmlib): ref #9359 revert JavaAPIforKml again
Andreas Müller
11:10 PM Revision 734e4ac1 (taxeditor): ref #10072 fig build path and fully remove log4j-slfj-impl
Andreas Müller
10:59 PM Revision bf042c15 (taxeditor): ref #10072 second try to get log4j-slf4j-impl running in taxeditor
Andreas Müller
10:48 PM Revision 8118ae16 (taxeditor): ref #10072 remove log4j-slf4j-impl-2.18.0 from build.properties
Andreas Müller
10:46 PM Revision 21818529 (cdmlib): ref #9359 revert upgrading of JavaAPIforKml
Andreas Müller
10:44 PM Revision 27d0564b (taxeditor): cleanup
Andreas Müller
10:44 PM Revision cd536e0b (taxeditor): ref #10072 last try to get log4j-slf4j-impl running in taxeditor
Andreas Müller
10:26 PM Revision baf3f9ee (taxeditor): ref #10009, ref #10072, ref 9359 remove log4j-1.2.17 from taxeditor.local/lib
Andreas Müller
10:14 PM Revision 42fa0ffe (taxeditor): ref #10009, ref #10072, ref 9359 fully upgrade log4j to 2.18.0 in taxeditor and adapt import in local and gitignore
Andreas Müller
09:37 PM Revision a7170c6a (taxeditor): ref #10009, ref #10072, ref 9359 upgrade log4j to 2.18.0 in taxeditor.local
Andreas Müller
09:35 PM Revision 55eaa9e4 (taxeditor): cleanup
Andreas Müller
07:53 PM Revision 4ea5120d (taxeditor): ref #10009, ref #10072, ref 9359 upgrade log4j to 2.18.0 in taxeditor
Andreas Müller
07:44 PM Revision 9bdb596f (taxeditor): cleanup
Andreas Müller
07:44 PM Revision 25617a21 (taxeditor): ref #9359, ref #10009 add and upgrade JavaAPIforKml to version 3.0.1 from uk.m0nom in taxeditor (cont.)
Andreas Müller
07:43 PM Revision 662e077a (taxeditor): ref #10009, ref #10072 add log4j-slf4j to taxeditor
Andreas Müller
07:26 PM Revision 1c1f1876 (taxeditor): ref #9359, ref #10009 remove unused dependencies in taxeditor
Andreas Müller
07:24 PM Revision 27a68076 (taxeditor): ref #9359, ref #10009 add and upgrade JavaAPIforKml to version 3.0.1 from uk.m0nom in taxeditor
Andreas Müller
07:21 PM Revision e7cbe266 (cdmlib): ref #9359 try to upgrade JavaAPIforKml to version 3.0.1 from uk.m0nom
Andreas Müller
06:36 PM task #10009: Cleanup dependencies in TaxEditor
The following dependencies were used in prior version but are currently not on the classpath:
~~~
lib/aspectjr...
Andreas Müller
06:32 PM Revision 327a8f12 (taxeditor): minor
Andreas Müller
06:25 PM Revision 8102eff6 (taxeditor): ref #100009 re-attach mchange-commons-java to enable datasource dialogue finish button and error handling for button
Andreas Müller
06:23 PM Revision 5a9a3068 (taxeditor): cleanup
Andreas Müller
04:48 PM task #9975: Create new UML diagramms for the CDM
java->uml generation is documented at: https://www.umldesigner.org/ref-doc/umlgen.html (Java to UML) Andreas Müller
04:45 PM task #9975 (Discussed): Create new UML diagramms for the CDM
There is a new repository for all platform UML documentation at ssh://git@dev.e-taxonomy.eu/var/git/platform.git .
...
Andreas Müller
03:41 PM Revision d4090aec (cdmlib): cleanup and javadoc
Andreas Müller
12:40 PM Revision fd4bf415 (cdm-dataportal): ref #10097 changes originalNameString->originalInfo in dataportal
Andreas Müller
12:39 PM Revision 6958ddc3 (cdm-dataportal): cleanup
Andreas Müller

07/23/2022

12:49 AM bug #9785 (Closed): Update script for missing measurment unit_ids (matrix)
I guess this worked. If we still find a database with non-updated data we should update manually. Andreas Müller
12:43 AM feature request #9906: Implement credits in dataportal
Model was adapte. Now we can implement in dataportal. Maybe we can do this during the performance sprint. Andreas Müller
12:41 AM feature request #9908 (Closed): Add timeperiod to credits
Implemented. Now we still need implementation in TaxEditor (#10098) and dataportal (#9906) Andreas Müller
12:39 AM feature request #10098 (Closed): Implement timePeriod for Credit in TaxEditor
see #9908 and #9906 for details Andreas Müller
12:37 AM feature request #10097 (Closed): Rename originalNameString to originalInfo
I guess this worked Andreas Müller
12:36 AM Revision df9935a6 (taxeditor): ref #10097 adapt originalNameString in taxeditor test
Andreas Müller
12:33 AM bug #9901 (Closed): Remove unique key Media_RightsInfo.rights_id
I guess this worked. I did not find any db with a uk-index only fk. Andreas Müller
12:27 AM bug #9830 (Closed): México Distrito Federal needs accent
Tested on integration_palmae Andreas Müller
12:10 AM Revision ee5a4c23 (taxeditor): ref #9908 adapt credits in taxeditor
Andreas Müller
12:09 AM Revision 50e674c4 (taxeditor): ref #10097 adapt originalNameString in taxeditor
Andreas Müller

07/22/2022

11:52 PM Revision b0675ba2 (cdmlib): adapt remote-webapp update path
Andreas Müller
11:52 PM Revision 4e2549d4 (cdmlib): adapt testH2 in remote-webapp
Andreas Müller
11:52 PM Revision 7cfdd498 (cdmlib): minor
Andreas Müller
11:52 PM Revision 5fbe7632 (cdmlib): ref #9785 fix SimpleSchemaUpdaterStep for error recovering
Andreas Müller
11:52 PM Revision 773534c5 (cdmlib): javadoc
Andreas Müller
11:52 PM Revision e16caaca (cdmlib): ref #10075, ref #9908 adapt test sql for OriginalSourceBase.accessed and Credits.timePeriod
Andreas Müller
11:52 PM Revision e6e7d41e (cdmlib): ref #10057 fix equalsShallowCompare in OriginalSourceBase
Andreas Müller
11:52 PM Revision 31598149 (cdmlib): ref #10057 fix isEmpty in OriginalSourceBase
Andreas Müller
11:51 PM Revision ce4dc9cf (cdmlib): update TestModelUpdater
Andreas Müller
11:51 PM Revision 5d5f629d (cdmlib): ref #9785 fix update script for measurement unit_ids
Andreas Müller
11:51 PM Revision 3720c2d4 (cdmlib): cleanup
Andreas Müller
11:51 PM Revision 9864b061 (cdmlib): ref #10097 add columnNameChanger for originalNameString to update script
Andreas Müller
11:51 PM Revision d05f8da0 (cdmlib): move CdmUpdater to new model version
Andreas Müller
11:51 PM Revision a80e5885 (cdmlib): ref #10057 add accessed field to OriginalSourceBase (cont., fullDataGenerator)
Andreas Müller
11:51 PM Revision 9d0815af (cdmlib): ref #9908 additional changes for Credit.timePeriod
Andreas Müller
11:51 PM Revision 2448aba7 (cdmlib): cleanup
Andreas Müller
11:51 PM Revision c4edd027 (cdmlib): ref #10057 add accessed field to OriginalSourceBase (cont., adapt clone, equals and isEmpty)
Andreas Müller
11:51 PM Revision 22847976 (cdmlib): ref #9908 add timePeriod to Credit
Andreas Müller
11:51 PM Revision 3783f232 (cdmlib): fix #9785 Update script for missing measurement unit_ids (matrix)
Andreas Müller
11:51 PM Revision 99637f24 (cdmlib): fix #9830 update México Distrito Federal label (add accent)
Andreas Müller
11:51 PM Revision b1e4eb3c (cdmlib): ref #9901 remove Media_RightsInfo.rights_id index
Andreas Müller
11:51 PM Revision c97ec7dd (cdmlib): ref #10097 adapt dataset.dtd (was incorrect before model change already)
Andreas Müller
11:50 PM Revision 89d135c6 (cdmlib): ref #10057 add accessed field to OriginalSourceBase
Andreas Müller
11:50 PM Revision 9c021029 (cdmlib): ref #10097 change originalNameString to originalInfo in cdmlib
Andreas Müller
11:50 PM Revision 8b57b93c (cdmlib): ref #10083 update script for blocking reverse label and schema updater for v5.32
Andreas Müller
11:38 PM Revision fceb01fb (taxeditor): adapt testH2 in taxEditor
Andreas Müller
11:38 PM Revision b2d2bb15 (cdm-vaadin): ref #10097 rename originalNameString to originalInfo in vaadin
Andreas Müller
11:37 PM Revision 5bbf59c3 (cdm-vaadin): adapt testH2 in vaadin
Andreas Müller
11:03 PM Revision e81d1360 (cdmlib): minor
Andreas Müller
10:47 PM Revision 0106eeef (cdm-vaadin): cleanup
Andreas Müller
07:39 PM feature request #10097 (Resolved): Rename originalNameString to originalInfo
Resolved in cdmlib and probably also in dataportal and vaadin, but still needs adaptation in taxEditor Andreas Müller
03:34 PM feature request #10097: Rename originalNameString to originalInfo
Original Doumentation from DescriptionElementSource:
~~~
* The use of "originalNameString" within a DescriptionE...
Andreas Müller
03:21 PM feature request #10097 (Closed): Rename originalNameString to originalInfo
... as we agreed on storing all kind of original (verbatim) information in this field, not only taxon names. Andreas Müller
06:29 PM feature request #9908 (Resolved): Add timeperiod to credits
Class adapted and update script written. Andreas Müller
05:45 PM bug #9785 (Resolved): Update script for missing measurment unit_ids (matrix)
Update script written Andreas Müller
05:12 PM bug #9830 (Resolved): México Distrito Federal needs accent
update script added Andreas Müller
05:00 PM bug #9901 (Resolved): Remove unique key Media_RightsInfo.rights_id
Andreas Müller
04:56 PM feature request #10057 (In Progress): Add "accessed" field to OriginalSourceBase
Model change done (not yet tested). Still needs cache strategy update and TaxEditor adaptation. Also maybe in Phycoba... Andreas Müller
04:37 PM Revision cdda449c (cdmlib): cleanup
Andreas Müller
02:50 PM Revision e3cea6b7 (cdmlib): fix log4j.xml
Andreas Müller
02:21 PM Revision 7a227ac8 (cdm-vaadin): cleanup
Andreas Müller
02:06 PM Revision f89ecd52 (cdm-vaadin): ref #10072 some adaptations for setLevel in vaadin
Andreas Müller
02:05 PM Revision 19920347 (cdm-dataportal): ref #10072 dome adaptations for setLevel in dataportal
Andreas Müller
02:05 PM Revision b4229a50 (cdmlib): cleanup and javadoc
Andreas Müller
02:04 PM Revision c8384ed5 (cdmlib): ref #10072 new methods for logging with deviating levels and reduce using of setLevel in production code
Andreas Müller

07/21/2022

07:08 PM bug #10044 (Closed): Maps in Flore Du Gabon are broken
I reimported all data (#10092) and (afterwards) moved all textdata based distribution to "Distribution (General)" and... Andreas Müller
07:02 PM task #10009 (Resolved): Cleanup dependencies in TaxEditor
Seems to work but still needs intensive testing and maybe some cleanup. Andreas Müller
06:58 PM task #10072: Upgrade fully to log4j2
Can you please review and maybe work on the **clean up** open issues a bit so we get clean code soon. Andreas Müller
04:06 PM task #10072 (Resolved): Upgrade fully to log4j2
More or less solved.
Open issues:
* ~~handl setLevel() better (see current workaround in cdmlib-commons LogUtils cl...
Andreas Müller
06:36 PM Revision 97ed1eda (cdm-server): ref #10055 add TODO in LoggingConfigurator
Andreas Müller
06:22 PM Revision ea3c5378 (cdm-dataportal): ref #10072, ref #9359 adapt log4j2 properties files in dataportal
Andreas Müller
06:05 PM Revision da72c9e9 (cdm-vaadin): cleanup and upgrade requiredMavenVersion
Andreas Müller
06:02 PM Revision 356c6915 (cdm-vaadin): ref 10072 remove LoggingConfigurer from vaadin
Andreas Müller
06:01 PM Revision 8bd9e993 (cdm-vaadin): ref 10072 remove log4j12 from vaadin and adapt log4j properties
Andreas Müller
05:48 PM task #9205 (Resolved): Remove apache-log4j-extras from TaxEditor dependencies
This should be fixed with adapting TaxEditor to log4j2 and adapting the according log4j.properties
Please review.
Andreas Müller
05:46 PM Revision 282212d6 (taxeditor): ref 10072 remove log4j12 and apache-log4j-extras from taxeditor and adapt log4j properties
Andreas Müller
04:53 PM bug #10090: Many LIEs in cdmserver log for Team.getCollectorTitleCache()
Should be fixed. Please review. Andreas Müller
04:52 PM task #10095 (Closed): Synchronize dependency versions in CdmServer
Andreas Müller
04:04 PM task #10095 (Resolved): Synchronize dependency versions in CdmServer
This is mostly done except for aopalliance which will be removed automatically when upgrading to spring 5.x Andreas Müller
04:51 PM feature request #10096 (Discussed): Add new TaxonNode status and make notes field more general
Andreas Müller
04:51 PM feature request #10096 (Closed): Add new TaxonNode status and make notes field more general
Add taxon node status
* Excluded geo., øg (geographically out of scope); specification of excluded status
* Exclu...
Andreas Müller
03:57 PM Revision dcb656c3 (cdmlib): ref #9359, ref 10095 try to remove xpp3 from cdmlib
Andreas Müller
03:56 PM Revision b0a7a43f (cdmlib): ref #9359 re-add javax.el-api as it is still needed hibernate-validation
Andreas Müller
03:34 PM Revision 67cc9bcd (cdm-server): test fixed length logging
Andreas Müller
03:19 PM Revision a67ce6e0 (cdm-server): test date and context logging
Andreas Müller
02:48 PM Revision 542ec6f1 (cdmlib): cleanup
Andreas Müller
02:48 PM Revision c36bdb95 (cdmlib): ref #10072, ref #9359, ref 10095 remove slf4j-nop from cdmlib
Andreas Müller
02:43 PM Revision 5d8ad42c (cdmlib): ref #10072 adapt integration test parameter name for log4j as it seems to be incorrect and switch from properties to log4j.xml there
Andreas Müller
02:41 PM Revision 116b3cae (cdmlib): ref #9359 javax.el-api from dependency management as it is not used anymore
Andreas Müller
02:40 PM Revision 1400461e (cdmlib): ref #10072, ref #9359 fully remove LoggingConfigurer as it is not adaptable to log4j2 and not used anymore (cont.)
Andreas Müller
02:10 PM Revision 8f45b947 (cdmlib): ref #10072, ref #9359 fully remove LoggingConfigurer as it is not adaptable to log4j2 and not used anymore
Andreas Müller
02:04 PM Revision ebfc034b (cdm-server): javadoc
Andreas Müller
02:04 PM Revision 78b0be7f (cdm-server): ref #9359, ref #10095 try to remove jakarta.el-api as apache-el is already on classpath in cdmserver
Andreas Müller
12:55 PM Revision 4309262f (cdm-server): ref #9359 replace javax.el-api by jakarata.el-api
Andreas Müller
12:54 PM Revision e985fe42 (cdm-server): cleanup
Andreas Müller
12:44 PM Revision feca66ca (cdm-server): ref #9359, ref #10072 add log4j2 to LoggingConfigurator in cdmserver
Andreas Müller
11:35 AM Revision a12dab80 (cdm-server): ref #9359, ref #10072, ref #10095 revert logging to logback classic for now and adapt correct handling for log4j in cdmserver
Andreas Müller
09:54 AM Revision 8c7f1b66 (cdmlib): ref #9359 upgrade to 3.0.6 for mariadb-java-client in cdmlib
Andreas Müller
09:54 AM Revision 95604162 (cdmlib): cleanup
Andreas Müller
09:51 AM Revision eb123a17 (cdm-server): ref #10095 remove old el-impl version from cdmserver
Andreas Müller
09:51 AM Revision d007e0a6 (cdm-server): cleanup
Andreas Müller
09:50 AM Revision b8c89622 (cdm-server): ref #9359, ref #10072, ref #10095 use log4j2 in cdmserver
Andreas Müller
12:42 AM Revision c269a0d9 (cdmlib): ref #10072 change log4j.properties to log4j.xml in remaining cdmlib modules
Andreas Müller

07/20/2022

11:49 PM Revision 6d3e493d (cdmlib): ref #10072 change log4j.properties to log4j.xml in commons, model, persistence and services
Andreas Müller
07:30 PM Revision 1f913edc (cdm-vaadin): ref #9359 try to remove springmodules from vaadin
Andreas Müller
07:25 PM Revision f2c2c233 (cdmlib): cleanup
Andreas Müller
07:24 PM Revision 29192aec (cdmlib): ref #10072, ref #9359, ref #10095 remove commons-logging from xmlgraphics.fop
Andreas Müller
07:00 PM Revision 216ea5a9 (cdmlib): javadoc
Andreas Müller
06:59 PM Revision 9120a89a (cdmlib): ref #10072, ref #9359, ref #10095 remove commons-logging from unitils-core and commons-beanutils
Andreas Müller
06:58 PM Revision e1efda1a (cdmlib): ref #10072 use log4j for slf4j in cdmlib-commons already
Andreas Müller
06:50 PM Revision d1e4062e (cdmlib): ref #10072, ref #9359, ref #10095 replace commons-logging by jcl-over-slf4j (cont., move jcl-over-slf4j to cdmlib-commons)
Andreas Müller
06:45 PM Revision 0408c72c (cdm-vaadin): ref #10072 final adaption log4j12->log4j2 in vaadin
Andreas Müller
06:44 PM Revision aafc3f59 (cdm-vaadin): cleanup
Andreas Müller
06:42 PM Revision b5f21afa (cdmlib): ref #10072, ref #9359, ref #10095 replace commons-logging by jcl-over-slf4j and adapt some loggers to log4j
Andreas Müller
05:35 PM Revision c06457d0 (cdm-vaadin): ref #10095, ref #9359 adapt json version in vaadin to cdmlib json version
Andreas Müller
04:18 PM Revision 9fa4ac9a (cdmlib): cleanup
Andreas Müller
04:02 PM Revision dab2a7f4 (cdmlib): remove lifecycle mapping for cdmlib-cache
Andreas Müller
04:01 PM Revision 840b4522 (cdmlib): ref #10095, ref #9359 upgrade and synchronize fasterxml versions
Andreas Müller
04:01 PM Revision c2facd18 (cdmlib): cleanup and javadoc
Andreas Müller
04:00 PM Revision 3d585f9d (cdmlib): ref #10095, ref #9359 remove javax.activation-api, jaxb-api and xalan from classpath (replaced by jakarta versions)
Andreas Müller
02:40 PM Revision 8b7babf9 (cdmlib): ref #10095 add fixed version for jackson-datatype-jsr310
Andreas Müller
02:16 PM task #10095 (In Progress): Synchronize dependency versions in CdmServer
Andreas Müller
02:16 PM task #10095 (Closed): Synchronize dependency versions in CdmServer
The CdmServer is a merge from cdmlib-remote-webapp and cdm-vaadin. Therefore it can happen that the same dependency a... Andreas Müller
02:06 PM Revision 8b32a3ce (cdmlib): cleanup
Andreas Müller
02:06 PM Revision 2e47e11d (cdmlib): ref #9359 add version number for commons-pool to avoid multiple versions in cdmserver comming from remote-webapp and vaadin (though unclear why vaadin retrieves a higher version)
Andreas Müller
11:52 AM Revision d75171f5 (cdmlib): first test B
Escobari Vargas

07/19/2022

11:19 PM Revision f893a1ff (cdmlib): ref #10072 comment usage of log4j12 in LoggingConfigurer and cdmlib-io in general (last log4j12 in cdmlib)
Andreas Müller
11:18 PM Revision 8edfa814 (cdmlib): ref #10072 remove log4j12 from cdmlib-io except for LoggingConfigurer issue
Andreas Müller
11:16 PM Revision a27635bd (cdm-vaadin): ref #10072 adapt vaadin to log4j2 and cleanup
Andreas Müller
10:41 PM Revision 26b856f8 (taxeditor): cleanup
Andreas Müller
10:39 PM Revision 527ecb11 (taxeditor): adapt CdmServerUtils to changes in CdmApplicationUtils
Andreas Müller
10:30 PM Revision b9fab907 (cdmlib): move NoDuplicateNamesValidator to api.validation package to split service layer from other modules, see also last commit
Andreas Müller
10:29 PM Revision eb1e36b8 (cdmlib): cleanup
Andreas Müller
10:12 PM Revision cf29bfc1 (cdmlib): move CdmApplicationUtils to real persistence package to avoid multiple scanning with service layer
Andreas Müller
10:10 PM Revision 2b7a0e65 (cdmlib): cleanup
Andreas Müller
09:07 PM Revision 5d7fcb25 (cdm-dataportal): ref #10072 fix log4j-api version and remove commons.lang in dataportal
Andreas Müller
09:06 PM Revision 4279ed61 (cdmlib): ref #10072 remove log4j12 from remote
Andreas Müller
09:05 PM Revision cb7f0fab (cdmlib): cleanup
Andreas Müller
08:50 PM Revision 4c2ad250 (cdmlib): cleanup
Andreas Müller
08:40 PM Revision f64f32be (cdm-dataportal): ref #10072 adapt dataportal to log4j2
Andreas Müller
07:40 PM Revision cf0057ee (cdmlib): ref #10072 use log4j2 in slf4j
Andreas Müller
06:31 PM task #10094: Reenabel anttask for 001-cdm.h2.sql creation
This is on the log on the very beginning (after git fetch), however, it looks like it was there before already.
~~...
Andreas Müller
06:02 PM task #10094: Reenabel anttask for 001-cdm.h2.sql creation
It had to be switched due to errors during build in jenkins.
Log:
~~~
[ERROR] Failed to execute goal org.apach...
Andreas Müller
05:52 PM task #10094 (New): Reenabel anttask for 001-cdm.h2.sql creation
Andreas Müller
06:28 PM Revision 0cd73a67 (cdmlib): cleanup
Andreas Müller
06:27 PM Revision 766fb6fd (cdmlib): avoid cookie error log on cnn
Andreas Müller
05:57 PM Revision cebc5b3a (cdmlib): ref #10094 preliminary disable 001-cdm.h2.sql (maybe a java11 issue in jenkins) (cont.)
Andreas Müller
05:53 PM Revision 6eaa7820 (cdmlib): ref #10094 preliminary disable 001-cdm.h2.sql (maybe a java11 issue in jenkins)
Andreas Müller
05:29 PM Revision 811a65d8 (cdmlib): fix incorrect uuid in HomotypicGroupTaxonComparatorTest
Andreas Müller
05:28 PM Revision 90a35da7 (cdmlib): cleanup
Andreas Müller
05:16 PM Revision b09c0226 (cdmlib): cleanup and remove debugging in PolytomousKeyGeneratorTest
Andreas Müller
04:30 PM Revision ad18cde1 (cdmlib): further changes for debugging
Andreas Müller
03:41 PM Revision ddc2152f (cdmlib): add java version check to DdlCreator
Andreas Müller
03:01 PM Revision 08ea6978 (cdmlib): ref #10072 temporarily revert log4j.properties
Andreas Müller
02:25 PM Revision 24ea68aa (cdmlib): ref #10072 switch off security manager for DdlCreator
Andreas Müller
01:12 PM Revision 40c85eaa (cdmlib): cleanup
Andreas Müller

07/18/2022

10:11 PM Revision e72a6e61 (cdmlib): ref #10093 adding very first classes copied from cdmlight for docx4j output
Andreas Müller
10:10 PM feature request #10093 (New): Create print publication classification output using docx4j
https://www.baeldung.com/docx4j
https://javadoc.io/doc/org.docx4j/docx4j/latest/index.html
Andreas Müller

07/17/2022

07:52 PM Revision 53bea31e (cdmlib): ref #10092 deproxy feature for FdG import
Andreas Müller
07:52 PM Revision 540b9682 (cdmlib): cleanup
Andreas Müller
07:06 PM Revision 2f53c10a (cdmlib): cleanup
Andreas Müller
10:34 AM Revision d9ff78b5 (cdmlib): ref #10072 temporarily rename log4j.xml
Andreas Müller

07/16/2022

11:45 PM Revision f905a388 (cdmlib): cleanup
Andreas Müller
11:22 PM Revision a4cab8c6 (cdmlib): ref #10092 adapt markup import to FdG requirements (fixing errors)
Andreas Müller
11:20 PM Revision 794be65e (cdmlib): cleanup
Andreas Müller
11:05 PM Revision 0e799f7c (cdmlib): ref #10072 change cdmlib-commons log4j.properties to log4j2 log4j.xml
Andreas Müller
08:34 PM Revision 0474ab0b (cdmlib-apps): ref #9359, ref #10072 adapt eflora to log4j2 logger and logmanager and some cleanup
Andreas Müller
02:12 PM Revision 22689a70 (cdmlib-apps): ref #10092 adapt FloreGabonActivator import largest volumes first and exclude feature tree and some logging issues
Andreas Müller
02:10 PM Revision 133817c6 (cdmlib-apps): ref #10092 adapt FdG sources to new location on PESIHPC
Andreas Müller
02:08 PM Revision 67da8787 (cdmlib-apps): cleanup
Andreas Müller

07/15/2022

03:51 PM Revision cfdb11fc (cdmlib): cleanup
Andreas Müller
03:51 PM Revision 643e100c (cdmlib): fix #10090 revert init strategy and catch LIE in getCollectorTitleCache()
Andreas Müller
03:33 PM bug #10090: Many LIEs in cdmserver log for Team.getCollectorTitleCache()
The reason was a missing property path for secsource authors.
The reason why it happened for **collectorTitleCache...
Andreas Müller
02:02 PM bug #10090 (Resolved): Many LIEs in cdmserver log for Team.getCollectorTitleCache()
Applied in changeset commit:cdmlib|6c536aa028a283ed2041899ac33a13baa41bcaeb. Andreas Müller
02:02 PM Revision 6c536aa0 (cdmlib): fix #10090 add secsource reference author to the PolytomousKeyNode init strategy
Andreas Müller

07/14/2022

09:57 PM Revision f492f1d9 (cdm-dataportal): javadoc, cleanup and revert some debugging
Andreas Müller
09:42 PM Revision c28b130d (cdmlib): cleanup
Andreas Müller
07:56 PM Revision 7494f3b1 (cdmlib): cleanup
Andreas Müller
07:03 PM Revision c7ef3e53 (cdmlib): ref #10090 catch LIE in Team.getCollectorTitleCache
Andreas Müller
06:59 PM Revision ac7949f3 (cdmlib): cleanup
Andreas Müller
06:26 PM task #10091 (Closed): Add stacktrace to JSON repsonse
This should be fixed. It is now possible to show the error message and the stacktrace of a failing webservice by addi... Andreas Müller
09:43 AM task #10091 (Resolved): Add stacktrace to JSON repsonse
Applied in changeset commit:cdmlib|0fffbab66709e2a4401a7fdc3ff4df8bc5fe1afe. Andreas Müller
09:38 AM task #10091 (Closed): Add stacktrace to JSON repsonse
... for better error finding Andreas Müller
05:55 PM Revision c7f13f26 (cdm-dataportal): handle errors not as json for commands with expected json result
Andreas Müller
05:54 PM Revision cbed020f (cdm-dataportal): cleanup
Andreas Müller
05:54 PM Revision ccc02dc1 (cdm-dataportal): add debugging
Andreas Müller
02:17 PM Revision 650193a1 (cdmlib): ref #10091 show stacktrace only if debug parameter is added
Andreas Müller
10:07 AM Revision b559f0f9 (cdmlib): ref #10089 adapt json mapping to new TypeDesignationSet handling (cont.)
Andreas Müller
09:43 AM Revision ab1abcbe (cdmlib): cleanup
Andreas Müller
09:43 AM Revision 0fffbab6 (cdmlib): fix #10091 Add stacktrace to JSON repsonse
Andreas Müller
09:36 AM Revision fdbd1a3a (cdmlib): ref #10089 return JSONNull for null values in type designation value processor
Andreas Müller
09:35 AM Revision d54d6020 (cdmlib): cleanup
Andreas Müller
08:47 AM Revision 22b33a05 (cdmlib): cleanup
Andreas Müller
08:40 AM Revision 1e4c68b2 (cdmlib): ref #10089 handle null values for map and type designation value processor
Andreas Müller
12:45 AM Revision 2de2cf10 (cdm-vaadin): ref #10089 handle RegistrationDTO with TypedEntityReference again in vaadin
Andreas Müller
12:44 AM Revision 25b120ed (cdmlib): ref #10089 handle RegistrationDTO with TypedEntityReference again in cdmlib
Andreas Müller
12:41 AM Revision cf58d709 (cdm-dataportal): ref #10089 rename TypeDesignationWorkingSet in dataportal
Andreas Müller

07/13/2022

11:28 PM Revision 54143f9a (cdmlib): ref #10089 adapt json mapping to new TypeDesignationSet handling
Andreas Müller
11:27 PM Revision f0b8034c (cdmlib): cleanup
Andreas Müller
08:02 PM Revision 2efce339 (cdmlib): ref #10090, ref #10089 try to avoid LIE in TypeDesignationSet
Andreas Müller
08:01 PM Revision d6353c79 (cdmlib): cleanup
Andreas Müller
07:51 PM bug #10090: Many LIEs in cdmserver log for Team.getCollectorTitleCache()
maybe related to #9949 Andreas Müller
07:49 PM bug #10090 (Closed): Many LIEs in cdmserver log for Team.getCollectorTitleCache()
from int cdmserver (startup.log)
~~~
Caused by: org.hibernate.LazyInitializationException: failed to lazily initi...
Andreas Müller
06:49 PM Revision 85f4724b (cdm-dataportal): add some debugging for finding drush exception (cont.)
Andreas Müller
05:56 PM Revision a3b7c3d9 (cdm-dataportal): add some debugging for finding drush exception
Andreas Müller
05:41 PM Revision a0d044d3 (cdm-dataportal): cleanup
Andreas Müller
12:44 AM Revision 046d6228 (cdmlib): fix #10089 final fixes for TypeDesignationSet formatting ordered by type status (cont.)
Andreas Müller
12:36 AM Revision 230f5b70 (cdm-vaadin): rename RegistrationTypeDesignationStatusComparator
Andreas Müller
12:34 AM bug #10089 (Resolved): Order TypeDesignationSetContainer by status type
Applied in changeset commit:cdmlib|7af46cd80139907f3c80f4ee1ad644a0260c7b18. Andreas Müller
12:34 AM Revision 7af46cd8 (cdmlib): fix #10089 final fixes for TypeDesignationSet formatting ordered by type status
Andreas Müller
12:05 AM Revision 98768399 (cdmlib): cleanup and support for orderedBy and factory methods for TypeDesignationSetContainer
Andreas Müller

07/12/2022

11:49 PM Revision f104a204 (cdmlib): cleanup
Andreas Müller
11:03 PM Revision fc477304 (cdm-vaadin): cleanup
Andreas Müller
11:02 PM Revision 7aa81094 (cdm-vaadin): cleanup and rename RegistrationValidationException to TypeDesignationSetException in vaadin
Andreas Müller
10:50 PM Revision 45356f85 (cdmlib): ref #10089 implement TypeDesignationSetContainer ordered by status not field unit
Andreas Müller
10:42 PM Revision 8e73bb3d (cdmlib): cleanup
Andreas Müller
10:40 PM Revision 9a5a2693 (cdmlib): cleanup and rename RegistrationValidationException to TypeDesignationSetException (cont.)
Andreas Müller
10:03 PM Revision c4a57e04 (cdmlib): cleanup and rename RegistrationValidationException to TypeDesignationSetException
Andreas Müller
09:16 PM Revision 48c8ef25 (cdmlib): minor
Andreas Müller
09:14 PM Revision 50778c94 (cdmlib): ref #10089 rename TypeDesignationSetManager to TypeDesignationSetContainer in cdmlib
Andreas Müller
08:54 PM Revision d9a042e5 (cdm-vaadin): ref #10089 rename TypeDesignationWorkingSet to TypeDesignationSet in vaadin
Andreas Müller
08:52 PM Revision 262c0177 (cdmlib): ref #10089 rename TypeDesignationWorkingSet to TypeDesignationSet in cdmlib
Andreas Müller
08:15 PM Revision d7160e6b (cdm-vaadin): ref #10089 remove TypedEntityReference from TypeDesignationWorkingSet in vaadin
Andreas Müller
08:13 PM Revision 3fb08830 (cdmlib): ref #10089 remove TypedEntityReference from TypeDesignationWorkingSet
Andreas Müller
08:13 PM bug #10089 (Closed): Order TypeDesignationSetContainer by status type
Currently it is first ordered by base entity (e.g. field unit) alphabetically and only within TypeDesignationWorkingS... Andreas Müller
07:54 PM Revision 4ce0e91d (cdm-vaadin): cleanup
Andreas Müller
06:25 PM Revision 61d1e335 (cdm-vaadin): replace LinkedHashMap by Map where possible in vaadin
Andreas Müller
06:24 PM Revision 7667f093 (cdm-vaadin): cleanup
Andreas Müller
06:22 PM Revision 8d7c7784 (cdmlib): make TypeDesignationWorkingSet a decorator and not inherit directly from LinkedHashMap
Andreas Müller
05:59 PM Revision edc8c14e (cdmlib): replace LinkedHashMap by Map where possible
Andreas Müller
05:58 PM Revision 1ddf0695 (cdmlib): cleanup
Andreas Müller

07/11/2022

08:41 PM Revision 7de1e8a5 (cdmlib): ref #10087 make placement source and placement source FK explicit columns and refactor test (also ref #10081 )
Andreas Müller
08:39 PM Revision b1fafec1 (cdmlib): ref #10087 make placement source and placement source FK explicit columns and refactor test (also ref #10081 )
Andreas Müller
06:48 PM feature request #10081: Show name in source for sec ref of accepted taxon
I also implemented for CDM light (commit:9e545c61). This was still missing as CDM light does not use the TaxonDefault... Andreas Müller
06:42 PM Revision 9e545c61 (cdmlib): ref #10081 add secundum name used in source to cdmlight
Andreas Müller
06:41 PM Revision 9e5bde9c (cdmlib): cleanup
Andreas Müller
03:03 PM feature request #10088 (New): Implement bibliography parser
Pensoft uses:
For the parser you can check https://anystyle.io/. It works pretty well in most cases.
Andreas Müller
01:05 PM feature request #10087 (Resolved): Add taxon node source to status notes in cdmlight
This is implemented, however, we still need to discuss if this is really the correct solution or if we better should ... Andreas Müller
12:55 PM feature request #10087: Add taxon node source to status notes in cdmlight
AM:
Ganz sicher bin ich mir aber nicht, ob das semantisch immer 100% richtig ist. Die Placement Source ist ja eine g...
Andreas Müller
11:43 AM feature request #10087: Add taxon node source to status notes in cdmlight
WGB:
Hallo,
mir ist aufgefallen, dass in Taxon.csv zwar die „Status notes“ (aus dem Taxon Node Dialog) ausgegeben...
Andreas Müller
11:42 AM feature request #10087 (Closed): Add taxon node source to status notes in cdmlight
Andreas Müller
01:03 PM Revision a9f7b763 (cdmlib): ref #10087 add taxon node source to status notes in cdmlight
Andreas Müller
01:02 PM Revision 09da8d56 (cdmlib): cleanup
Andreas Müller

07/10/2022

10:37 AM task #10064: Upgrade cybertaxonomy.org to Drupal9
Editing text on https://cybertaxonomy.org/setups/group/server_requirements does not work. The text seems to be store... Andreas Müller

07/08/2022

11:21 PM task #10064: Upgrade cybertaxonomy.org to Drupal9
On https://cybertaxonomy.org/node/4/edit I tried to change the link for "Taxonomic Editor (TaxEditor)" from "http://w... Andreas Müller
11:06 PM bug #10079: Fix timezone problems after upgrading jadira.usertype, hibernate and/or mysql drivers
Remaining issues should be solved in next milestone Andreas Müller
11:05 PM bug #8343 (Closed): potential timezone problem in application stack
I think this ticket can be closed. The timezone problem is now solved with correct availability of timezone informati... Andreas Müller
10:58 PM feature request #10081: Show name in source for sec ref of accepted taxon
Tests and improved handling of secundum part is handled in #10085 Andreas Müller
10:33 PM feature request #10081 (Feedback): Show name in source for sec ref of accepted taxon
Generally works but there is an unwanted whitespace after the closing bracket.
See https://test.e-taxonomy.eu/dat...
Andreas Müller
10:54 PM bug #10075 (Closed): Fix deserialization exception for bytebuddy base hibernate SerializableProxy
I think we can close this ticket as the problem did not show up anymore. Andreas Müller
10:53 PM task #3722 (Feedback): Using @OrderColumn does not work in trees
Andreas Müller
10:39 PM bug #10059 (Closed): Link for stored under and identification on specimen page does not work correctly
Works as expected Andreas Müller
09:33 PM bug #10076 (Closed): Exception when opening character matrix with classification as root node
Works as expected. Andreas Müller
04:32 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
Update script is written and checked on integration.
Dataportal and cdmlight(?) still need to be updated.
Relationsh...
Andreas Müller
04:20 PM feature request #10083: Add name relationship type "avoids homonym of"/"causes replacement name"
~~~
SELECT r.id relId, n1.titleCache n1, t.titleCache rel, n2.titleCache n2, n1.nameCache n1short, n2.nameCache n2sho...
Andreas Müller
02:26 PM feature request #10086: Taxonomic and geographic search for data portal
ERS:
das typische Ergebnis einer Geo-Abfrage sieht so aus:
![](clipboard-202207081421-julug.png)

Man wählt ...
Andreas Müller
02:22 PM feature request #10086 (New): Taxonomic and geographic search for data portal
Geo search already works but the taxonomic filter is still missing. This is a filter on any higher taxon (>= genus ?)... Andreas Müller
02:15 PM task #8865 (In Progress): more external-links to be implemented
Eckhard, can you please check if there is still some issue open from this ticket or if it can be closed? Andreas Müller

07/07/2022

11:58 PM Revision 0bb5c8a2 (cdmlib): ref #10067 cleanup CdmModelCacher
Andreas Müller
11:01 PM Revision 5864d558 (cdmlib): ref #6696 write model cache to target and use compile phase
Andreas Müller
11:00 PM Revision 2b7260c4 (cdmlib): add ehcache to cdmlib-cache
Andreas Müller
09:57 PM Revision 49eb471d (cdmlib): cleanup
Andreas Müller
09:43 PM Revision 22aa850d (cdmlib): ref #6696 change maven phase for CdmModelCache creation and move cdmlib-cache modul up behind cdmlib-service
Andreas Müller
08:49 PM Revision 1a1e2ca4 (cdmlib): ref #6696 create CdmModelCache during maven and remove cached model from git
Andreas Müller
05:54 PM Revision c0ed5d8e (cdmlib): ref #10067 save new cache model created with hibernate version 5.4
Andreas Müller
02:35 PM feature request #10083 (Resolved): Add name relationship type "avoids homonym of"/"causes replacement name"
The relationship was added. We still need an update script or handling for the inverse label and for existing data. Andreas Müller
12:44 PM bug #10084: Adding a new specimen to character matrix fails
Katja Luther wrote in #note-4:
> Andreas Müller wrote in #note-3:
> > Generally the bug seems to be fixed and the t...
Katja Luther
10:57 AM Revision 017bce1e (cdmlib): ref #10083 add AVOIDS_HOMONYM_OF name relationship
Andreas Müller
10:57 AM Revision d1ea8316 (cdmlib): cleanup
Andreas Müller

07/06/2022

04:12 PM Revision 36a4dfbd (cdmlib): ref #10081: add secNameInSourceSeparator to separator
Katja Luther
03:19 PM Revision a1998e47 (cdm-dataportal): ref #10081: remove the font-style for separator again
Katja Luther
03:18 PM Revision 143a6271 (cdmlib): ref #10081: add tag secNameInSourceSeparator and use it in cacheStrategy
Katja Luther
03:17 PM feature request #10081: Show name in source for sec ref of accepted taxon
Added a new tag for the separators surrounding the name used in source, this is extracted from the taggedTaxon and if... Katja Luther
03:03 PM Revision ff162af3 (cdm-dataportal): ref #10081: adapt nameInSource handling in portal
Katja Luther
10:11 AM task #3722: Using @OrderColumn does not work in trees
On PolytomousKeys:
* added a fresh PK
* added a new top level node (like always) results in a sortindex 1 for thi...
Andreas Müller
09:56 AM task #3722: Using @OrderColumn does not work in trees
Andreas Müller wrote in #note-18:
> Term trees/nodes also seem to work. Katja, can you please double check this?
...
Katja Luther
10:00 AM bug #10084 (Feedback): Adding a new specimen to character matrix fails
Andreas Müller
10:00 AM bug #10084: Adding a new specimen to character matrix fails
Katja Luther wrote in #note-4:
> Sometimes it needs a break, than a better solution could be found. I solved it with...
Andreas Müller
09:50 AM bug #10084 (Resolved): Adding a new specimen to character matrix fails
Andreas Müller wrote in #note-3:
> Generally the bug seems to be fixed and the ticket can be closed.
>
> Only the...
Katja Luther
09:49 AM Revision f134a838 (cdmlib): ref #10084: add type comparison to hql again
Katja Luther

07/05/2022

11:24 PM Revision 4d1f9d42 (taxeditor): cleanup
Andreas Müller
11:19 PM Revision 5e838349 (taxeditor): cleanup
Andreas Müller
11:14 PM Revision 599c91e5 (taxeditor): cleanup
Andreas Müller
10:56 PM Revision 9a6e5099 (cdmlib): cleanup
Andreas Müller
10:55 PM Revision 758086db (taxeditor): Preferenzen->Präferenzen
Andreas Müller
10:55 PM Revision 3f5ed758 (taxeditor): cleanup
Andreas Müller
10:20 PM Revision 35105144 (cdmlib): ref #10067, ref #3722, ref #8127 remove remaining sortindex handling from polytomous key node
Andreas Müller
10:19 PM Revision 4b8da4a0 (cdmlib): cleanup
Andreas Müller
06:15 PM task #3722: Using @OrderColumn does not work in trees
Term trees/nodes also seem to work. Katja, can you please double check this? Andreas Müller
06:15 PM task #3722: Using @OrderColumn does not work in trees
SQL for testing persisted Polytomous Key Nodes:
~~~SQL
SELECT pkn.id, pkn.created, nodenumber, KEY_id, parent_id,...
Andreas Müller
06:08 PM task #8127: [Reminder] to check if Hibernate Null Value bug still exists
See also #3722#note-14 ff for comments relevant here. Andreas Müller
05:57 PM bug #10084 (Feedback): Adding a new specimen to character matrix fails
Generally the bug seems to be fixed and the ticket can be closed.
Only the handling of descriptionType in the code...
Andreas Müller
04:01 PM feature request #10081 (Resolved): Show name in source for sec ref of accepted taxon
Set the font-style for separator to normal, this is the way it is done for markers. Please review.
I also will have...
Katja Luther
01:43 PM feature request #10081 (Feedback): Show name in source for sec ref of accepted taxon
The current formatting shows brackets and "sub" in italics but only the name parts should be in italics.
This is b...
Andreas Müller
01:32 PM feature request #10081 (Resolved): Show name in source for sec ref of accepted taxon
Katja Luther
01:32 PM feature request #10081: Show name in source for sec ref of accepted taxon
with the correct init strategy the name in source is shown. for review : https://int.e-taxonomy.eu/dataportal/integra... Katja Luther
03:57 PM Revision c377a0d9 (cdm-dataportal): ref #10081: add separator font-style
Katja Luther
01:52 PM Revision 3b4b9e2f (taxeditor): ref #10067, ref #3722, ref #8127 remove null value handling from PolytomousKeyGraphContentProvider in taxEditor
Andreas Müller
01:28 PM Revision 5c45a99a (cdmlib): ref #10067, ref #3722, ref #8127 remove all manual sortindex and null value handling from polytomous key (node)
Andreas Müller
01:25 PM Revision 0694bb3d (cdmlib): ref #10067, ref #8127 remove remaining null value handling from taxon node
Andreas Müller
01:24 PM Revision 3dc1adc5 (cdmlib): ref #10067, ref #3722, ref #8127 remove all manual sortindex and null value handling from term node
Andreas Müller
01:19 PM Revision ab85ad67 (cdmlib): ref #10067, ref #8127 remove "removeAllNull" (HHH_9751_Util) from DescriptionBase
Andreas Müller
11:16 AM Revision 059a8e53 (taxeditor): ref #8818: remove predicate from distribution status table in preferences
Katja Luther
09:56 AM bug #10079: Fix timezone problems after upgrading jadira.usertype, hibernate and/or mysql drivers
I discussed with WHK how far time information is needed in the phycobank dataportal. According to WHK it is (currentl... Andreas Müller
09:46 AM Revision edb488c8 (taxeditor): test
Katja Luther

07/04/2022

10:35 PM Revision 84f11f2b (cdmlib): revert remove strange IkeyPlusImport properties files in io/src/test/resources/main
Andreas Müller
10:12 PM Revision bb03b5f4 (cdmlib): cleanup and remove strange IkeyPlusImport properties files in io/src/test/resources/main
Andreas Müller
10:02 PM Revision 53fc098d (taxeditor): improve logging for exception in AbstractPersistentCollection.remoteInitialize()
Andreas Müller
09:43 PM Revision f13320e2 (cdmlib): fix CCE in IOServiceImpl for URI based imports
Andreas Müller
09:43 PM Revision 27f9f715 (cdmlib): cleanup and javadoc
Andreas Müller
03:43 PM Revision 4c68380d (cdmlib-apps): ref #9359 remove hsqldb StringComparator from ErmsTaxonImport
Andreas Müller
03:43 PM Revision 5bb9c7d1 (cdmlib-apps): update e-Flora and pesi to 5.32.0-SNAPSHOT
Andreas Müller
03:35 PM Revision e11ce0a9 (cdmlib-apps): cleanup
Andreas Müller
03:35 PM Revision 4b88f183 (cdmlib-apps): adapt BerlinModelImport to new cacheStrategy getter
Andreas Müller
03:34 PM Revision b10eeaf7 (cdmlib-apps): update app-import to 5.32.0-SNAPSHOT
Andreas Müller
03:30 PM Revision 8c64898f (cdmlib): ref #9359 update log4j to 2.18.0 in cdmlib
Andreas Müller
03:29 PM Revision 7af8b889 (utis-webapp): ref #9359 update log4j to 2.18.0 in utis-webapp
Andreas Müller
03:27 PM Revision f2234658 (cdm-dataportal): ref #9359 update log4j to 2.18.0 in dataportal
Andreas Müller
03:04 PM Revision c7e9d1ed (cdmlib): add nomenclatural author of nameInSource to init strategy
Katja Luther
12:29 PM Revision 904397ee (taxeditor): remove debug messages
Katja Luther
12:19 PM Revision bc55416e (cdmlib): ref #10081: add nameUsedInSource to initStrategy
Katja Luther
10:22 AM Revision 4287668c (taxeditor): add debugging for source section
Katja Luther
09:52 AM Revision ea87ffcb (taxeditor): add debugging for source section
Katja Luther
09:25 AM Revision 083eabed (taxeditor): minor
Katja Luther

07/01/2022

11:26 AM Revision f29ead53 (taxeditor): ref #10080: add messages
Katja Luther
 

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