Activity
From 05/09/2022 to 06/07/2022
06/07/2022
- 01:19 PM bug #10033 (In Progress): For new FeatureTree only uuid is shown in dataportal
- 01:19 PM bug #10033 (Resolved): For new FeatureTree only uuid is shown in dataportal
- We need to adapt the taxeditor implementation, so that not the titlecache but the representation is used.
- 12:36 PM bug #10033: For new FeatureTree only uuid is shown in dataportal
- Terms contain an termrepresentation object, this is empty for terms/termcollections created in taxeditor. As a first ...
06/02/2022
- 02:33 PM bug #10034 (Resolved): Flat feature tree throws exception
- Now moving unsaved nodes is handled correctly. Please reviw.
- 09:41 AM bug #10071 (In Progress): TaxonNodeDtos should be created directly not from taxon objects
- This is done for the search of the taxonnodes for a specific taxon and also for the search in a subtree.
- 08:50 AM bug #10071 (Closed): TaxonNodeDtos should be created directly not from taxon objects
- The webservice getting the taxonnodeDtos for a taxon, first gets the taxon object and then creates the Dtos for the t...
06/01/2022
- 01:58 AM bug #10034 (In Progress): Flat feature tree throws exception
- Andreas Müller wrote in #note-2:
> The problem does only seem to appear if you try to move a node before you save. I... - 12:00 AM task #10009 (In Progress): Cleanup dependencies in TaxEditor
05/31/2022
- 02:43 PM bug #10034: Flat feature tree throws exception
- Could not reproduce this problem with the actual nightly build.
Steps I tried to reproduce the problem:
* creat... - 01:12 PM feature request #10070 (New): Upgrade to hibernate 6+
- Before start upgrade to hibernate 5.6.x if not yet done. There is still a problem with the TaxonGraphHibernateListene...
- 12:44 PM bug #10056 (Resolved): Make Reference.Accessed deletable in TaxEditor
- Added a delete button, please review.
- 11:57 AM bug #10059: Link for stored under and identification on specimen page does not work correctly
- please review.
- 11:57 AM bug #10059: Link for stored under and identification on specimen page does not work correctly
- The path to the name needs to be processed by url(), then the correct link is used.
- 11:56 AM bug #10059 (Resolved): Link for stored under and identification on specimen page does not work correctly
- Applied in changeset commit:cdm-dataportal|c90f5440175074c6a350ad24fdaba0c0b6b9ae74.
- 10:22 AM bug #10059: Link for stored under and identification on specimen page does not work correctly
- This problem occurs because there is an element data-cdm-render-path containing the actual render path and this is us...
- 08:28 AM task #10067 (In Progress): Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
- 08:16 AM feature request #10069 (In Progress): Upgrade hibernate search and lucene to hs6+ and lucene 8+
- Lucene 6+ seems to require hs6+ as there is a strange dependency on org.apache.lucene.document.Field.Index and ...Fie...
05/30/2022
- 10:59 PM bug #5477 (Resolved): lucene index not updated in all cases after Taxon.addMisappliedName
- Was not fully fixed yet. Problem reoccurred after upgrading to hibernate-search 5.7.3. "ContainedIn" was still missin...
- 10:47 PM bug #7487 (Resolved): Full text misapplied name search with area filter uses fixed relation type uuid
- Solved by adding also proparte and partial MAN and partial synonym relationship type subqueries. Also related to fina...
- 11:54 AM bug #10068 (Closed): Changing focus to accepted taxon does not work
- After opening a the name editor with focus on a synonym, the change of focus to the accepted taxon does not work, res...
- 11:27 AM bug #10060: Exception when adding kind-of-unit information to a field unit
- Katja Luther wrote in #note-1:
> I think we should not allow to set a kind of unit for a field unit, so I would remo... - 09:18 AM bug #10060 (In Progress): Exception when adding kind-of-unit information to a field unit
- I think we should not allow to set a kind of unit for a field unit, so I would remove the possibility to edit the kin...
05/25/2022
- 10:49 AM task #3722 (Resolved): Using @OrderColumn does not work in trees
- Probably solved, still needs intensive testing and code cleanup.
- 10:29 AM feature request #7861 (In Progress): TaxonGraphHibernateListener: inject the ITaxonGraphDao into TaxonGraphBeforeTransactionCompleteProcess
- A somehow similar solution was implemented in 8c6b6172722d to adapt the TaxonGraphBeforeTransactionCompleteProcess to...
- 10:23 AM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
- Andreas Kohlbecker wrote in #note-10:
> "Session is closed!"-problem is solved now.
This fix was only a workaroun...
05/23/2022
- 03:56 PM task #3722 (In Progress): Using @OrderColumn does not work in trees
- 10:57 AM task #3722: Using @OrderColumn does not work in trees
- sortIndex needs to be handled newly in hibernate5.2 so we can try to handle this ticket, too.
- 03:55 PM task #8127 (In Progress): [Reminder] to check if Hibernate Null Value bug still exists
- 03:55 PM task #8127: [Reminder] to check if Hibernate Null Value bug still exists
- HHH_9751_Util is closed in the meanwhile (https://hibernate.atlassian.net/browse/HHH-9751) and we probably can remove...
- 01:04 PM bug #10012 (Closed): Fix failing SpecimensTreeViewTest for dataportals after debian11 migration
- Tests are ok again, so we can close this ticket.
- 10:03 AM bug #10012: Fix failing SpecimensTreeViewTest for dataportals after debian11 migration
- php5 needed to be disabled and php7.4 enabled. This is done and pages with jstor image viewer as url are displayed co...
- 10:34 AM task #10067: Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
- mvn clean install –fail-never (or just –fn)
https://maven.apache.org/surefire/maven-surefire-plugin/examples/single-...
05/20/2022
- 06:03 PM task #10067 (Closed): Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
- https://stackoverflow.com/questions/50207195/how-to-upgrade-hibernate-from-version-4-3-to-5-2-for-migration-to-jdk-10...
- 02:50 PM task #10064 (Resolved): Upgrade cybertaxonomy.org to Drupal9
- cybertaxonomy.org is updated to 9.3 and using core-recommended (see https://github.com/drupal/core-recommended), the ...
05/18/2022
- 11:05 AM feature request #10066 (New): Secundum reference should be clickable
- The secundum reference should be clickable to open the details of the reference.
05/17/2022
- 11:46 AM task #10064 (In Progress): Upgrade cybertaxonomy.org to Drupal9
- Updated to 8.9, now the update to drupal 9 should work.
-> To check whether everything is compatible with drupal 9, ...
05/16/2022
- 05:21 PM bug #10007: fix reindex jobs on jobber
- There are/were multiple problems.
TRIGGER-cdmserver-reindex:
1. No groovy was installed at all on the server
... - 08:45 AM task #10064: Upgrade cybertaxonomy.org to Drupal9
- see https://www.drupal.org/docs/upgrading-drupal/how-to-prepare-your-drupal-7-or-8-site-for-drupal-9/upgrading-a-drup...
05/13/2022
- 12:07 PM task #10006: Check backups fully work after upgrades to debian 11
- **edit-backup:**
The monthly for edit-community seems to be made every week instead every month.
Last monthlies are... - 11:42 AM feature request #10003 (Closed): Implement specimen status in Data portal
- Seems to work as expected and can be closed.
05/12/2022
- 10:51 PM task #9991: Move content for users and admins from site.xml's to cybertaxonomy.org/drupal
- This was blocked by problems with D8 version. So we may want to wait until D9 is installed (#10064)
- 10:44 PM task #9994 (Closed): Tasks from documentation meeting 3/22
- For all tasks from https://wiki.bgbm.org/bdinotes/index.php/BDI_332 tickets have been created. So we can close this t...
- 10:41 PM task #10064 (Resolved): Upgrade cybertaxonomy.org to Drupal9
- ... as support for Drupal8 already ended this is an urgent issue.
#9994: "Drupal8 needs to be upgraded to D9/10" - 10:36 PM task #10063 (New): Move online tutorials to single place
- "we put all online tutorials a single place, preferable at https://cybertaxonomy.org/download/manual/ or https://cybe...
- 10:28 PM feature request #10062 (New): Migrate TaxEditor word documentation to markdown
- Word documents Manual-EDIT-Platform-01-XXX.pdf, -02 and -03 should be fully migrated to markdown for testing if every...
- 10:24 PM bug #10061 (New): Current in-TaxEditor documentation needs to be removed
- ... (and replaced by up-to-date docmentation if possible, pdf?, html?)
see meeting 2022-03-18 (https://wiki.bgbm.o... - 06:12 PM task #10015 (Duplicate): Cleanup EDIT server pages on BDI notes
- Close this as duplicate as #10042 has a bit larger focus.
- 06:09 PM task #10015 (In Progress): Cleanup EDIT server pages on BDI notes
- I created an Retire and Archive section on the main page.
- 06:05 PM discussion #7917 (In Progress): Revise ReferenceSystemTerms
- 05:55 PM bug #9007: Enable i18n support for media description UI
- There seems to be a related open issue with the details view for the MediaSpecimen in the specimen tree editor.
* i... - 05:54 PM bug #9007 (Feedback): Enable i18n support for media description UI
- This to me seems to be fixed. Can you please verify and close the ticket if possible.
- 05:13 PM feature request #3756: Missing data and layout improvements for MediaSpecimen in data portal
- I checked the MediaSpecimen and changed the ticket in the way that it becomes an implementation ticket.
- 02:55 PM feature request #3756: Missing data and layout improvements for MediaSpecimen in data portal
- Many things happened since this ticket was created. We need to check if there are still open issues.
- 02:33 PM bug #10060 (In Progress): Exception when adding kind-of-unit information to a field unit
- When trying to edit the "kind of unit" field of a field unit in specimen-tree-editor details view the following error...
- 02:12 PM feature request #6866: Improve specimen page
- Move back to original milestone.
- 02:09 PM feature request #6866 (Closed): Improve specimen page
- This can be closed. Open issues were moved to follow-up ticket #10058 (missing attributes) and related ticket #9879 (...
- 12:19 PM bug #10059 (Closed): Link for stored under and identification on specimen page does not work correctly
- **Stored under** links to e.g. https://portal.cybertaxonomy.org/salvador/cdm_dataportal/occurrence/cdm_dataportal/nam...
- 12:17 PM feature request #10058 (New): Further improve specimen page (factual data, extensions,
- follow up for #6866
In #6866 data has been atomized and structured already. However, there are datatypes missing. ... - 11:27 AM feature request #3307 (Worksforme): optionally reduce complexity in specimen display
- I guess this is fixed more or less with current implementations of 3 representations for specimens and the possibilit...
05/11/2022
- 01:31 PM feature request #10057: Add "accessed" field to OriginalSourceBase
- WGB:
mir ist gerade an Hand des folgenden Eintrags etwas aufgefallen:
Hier ... - 01:28 PM feature request #10057 (Closed): Add "accessed" field to OriginalSourceBase
- to allow reusability for references of type "WebPage".
Currently it is not possible to fully reuse them once the "... - 01:07 PM bug #10056 (Closed): Make Reference.Accessed deletable in TaxEditor
- References of type WebPage do have an "accessed" field. This currently can't be deleted. We should make it deleteable...
- 11:34 AM task #8863: Create full documentation on multilingual setup of the Data Portal
- Within 5.32 the documentation at [[CdmDataportalMultilingual]] has been updated as far as needed for the flora mexico...
- 11:11 AM feature request #10003 (Resolved): Implement specimen status in Data portal
- 10:54 AM task #10055 (New): Updates, upgrades and cleanup 2023
- All tasks that should be considered during the 2023 updates, upgrades and cleanup sprint
* ~~Upgrade linux to late...
05/10/2022
- 05:32 PM task #9991: Move content for users and admins from site.xml's to cybertaxonomy.org/drupal
- partly done for https://cybertaxonomy.org/portal/ (new page preliminary at .../portal2/)
For details see #2091#no... - 05:25 PM task #2091 (Feedback): Improve DataPortal documentation
- There are still a couple of open issues therefore I move this to the current milestone. We may discuss the open issue...
- 04:46 PM task #2091: Improve DataPortal documentation
- Open issues:
* move all content from https://cybertaxonomy.org/portal/ to https://cybertaxonomy.org/portal2/ : DONE... - 12:50 PM task #2091: Improve DataPortal documentation
- removed the outdated "CDM Dataportal Demo Sites" block by a link to reference projects on cybertaxonomy.org
05/09/2022
- 06:11 PM bug #10054: Changes on secundum reference are lost after changing status to basionym
- Andreas Müller wrote in #note-2:
> We should check within 5.32 if this is reproducabl, at least.
In first tests I... - 05:18 PM bug #10054: Changes on secundum reference are lost after changing status to basionym
- We should check within 5.32 if this is reproducabl, at least.
- 04:06 PM bug #10054 (Closed): Changes on secundum reference are lost after changing status to basionym
- mail Maryam Malekmohammady:
I am writing this email for your information and maybe you already know. As you know t... - 04:03 PM bug #10053 (Closed): Problems with saving of secundum references
- mail Maryam Malekmohammady:
This problem happened several times while working on different taxon names. I am repor...
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