Project

General

Profile

Activity

From 12/16/2021 to 01/14/2022

01/14/2022

10:10 PM Revision 87b297f0 (cdmlib): fix pluginManagement for m2e in cdmlib-model and -test
Andreas Müller
09:41 PM Revision e3dab47f (cdmlib): minor
Andreas Müller
09:14 PM Revision cd0cc937 (cdmlib): add pluginManagement tag to avoid error for <execution> tag
Andreas Müller
09:13 PM Revision ec0b7ed7 (cdmlib): remove commented version from dependencies in cdmlib-db
Andreas Müller
06:28 PM bug #9917 (In Progress): etopo1 broken due to server migration at noaa.gov
Andreas Müller
05:29 PM bug #9917: etopo1 broken due to server migration at noaa.gov
see mapproxy git repo branch `nooa-etopo1-fix` for a first attempt to fix this in mapproxy Andreas Kohlbecker
05:17 PM bug #9917 (Closed): etopo1 broken due to server migration at noaa.gov
The map service at noaa has been moved to a new server and map are thus available from new service endpoints:
Docu...
Andreas Kohlbecker
04:54 PM Revision b7770b03 (utis-webapp): updating doc on docker-compose setup
Andreas Kohlbecker
04:22 PM bug #9916 (Resolved): Tooltip for data cells in bulkeditor
Please review. Katja Luther
04:21 PM bug #9916 (Closed): Tooltip for data cells in bulkeditor
mail AM:
ich habe kürzlich beim Datacleaning festgestellt, dass bei den Bulk Editor NAT Tables beim Mouse Over das...
Katja Luther
04:18 PM Revision 7dd447df (taxeditor): tooltips for data fields in bulk editor
Katja Luther
03:43 PM feature request #9915 (New): Make "accessed" also available for references of type "database"
"Accessed" already exists for websites. Websites and databases are usually dynamic references and therefore maybe ci... Andreas Müller
02:04 PM Revision 1ce79b2f (utis-webapp): updating documentation: set up for docker-compose
Andreas Kohlbecker
10:09 AM bug #9236 (Closed): stopping an instance breaks the centralized logging
This works as expected. Katja Luther

01/13/2022

05:56 PM Revision dbdfb62b (cdm-server): ref #9236 better solution to solve the broken logging: disable the LogbackServletContainerInitializer per webapp init parameter
Andreas Kohlbecker
04:54 PM bug #9236: stopping an instance breaks the centralized logging
solved by excluding the LogbackServletContainerInitializer from the configuration.
Please review
Andreas Kohlbecker
04:53 PM bug #9236 (Resolved): stopping an instance breaks the centralized logging
Applied in changeset commit:cdm-server|7ba74c603e769569dd1b0052949cd321c86722da. Andreas Kohlbecker
12:05 PM bug #9236 (In Progress): stopping an instance breaks the centralized logging
Andreas Müller
11:29 AM bug #9236: stopping an instance breaks the centralized logging
The problem is caused by the `LoggerContext` being shutdown by the `LogbackServletContextListener` in `LogbackServlet... Andreas Kohlbecker
04:53 PM Revision 7ba74c60 (cdm-server): fix #9236 solving broken logging by excluding the LogbackServletContainerInitializer from the configuration
Andreas Kohlbecker
04:02 PM Revision c374a931 (cdm-server): updating documentation and removing class names from ServerClassPatterns
Andreas Kohlbecker
12:25 AM Revision 6c2676d4 (cdm-webapp): update EditRepository to https
Andreas Müller
12:20 AM Revision 4e578566 (cdm-vaadin): update EditRepository to https
Andreas Müller
12:14 AM Revision 5b0327d4 (cdmlib): set default source mode for distribution aggregation from child to parent to NONE
Andreas Müller

01/12/2022

11:59 PM Revision 68f3f710 (taxeditor): minor
Andreas Müller
11:51 PM Revision d9d7beec (cdmlib): ref #9359 revert update hsqldb in cdmlib (cont.)
Andreas Müller
11:49 PM Revision 92b76e20 (cdmlib): ref #9359 revert update hsqldb in cdmlib
Andreas Müller
10:11 PM Revision 94b2bce7 (taxeditor): ref #9359 update xercesImpl in taxeditor (cont.)
Andreas Müller
09:55 PM Revision b2c85611 (taxeditor): use https for EditRepository
Andreas Müller
09:42 PM Revision 81d08f97 (taxeditor): remove xstream from gitattributes
Andreas Müller
09:41 PM Revision 28e80be0 (cdmlib): ref #9359 update plexus-utils in cdmlib (fix compile error)
Andreas Müller
09:33 PM Revision 9b8c99b3 (taxeditor): ref #9359 update mysql and postgresql in taxEditor (cont.)
Andreas Müller
09:06 PM Revision e8d0eec7 (taxeditor): minor
Andreas Müller
09:06 PM Revision 23f8a87b (taxeditor): ref #9359 update aspectj in taxeditor
Andreas Müller
09:00 PM Revision 80a26358 (cdmlib): ref #9359 update aspectj in cdmlib
Andreas Müller
08:55 PM Revision b3321396 (cdmlib): ref #9359 update plexus-utils in cdmlib
Andreas Müller
08:52 PM Revision 3bdc6b29 (cdmlib): ref #9359 update hsqldb in cdmlib
Andreas Müller
08:43 PM Revision 2ebe2266 (taxeditor): ref #9359 update xercesImpl in taxeditor
Andreas Müller
08:42 PM Revision fb0a7a66 (cdmlib): ref #9359 update xercesImpl in cdmlib
Andreas Müller
08:40 PM Revision 942ddf0b (cdmlib): ref #9359 update mysql, postgresql and mssql in cdmlib
Andreas Müller
08:36 PM Revision bde4e213 (taxeditor): ref #9359 update mysql and postgresql in taxEditor
Andreas Müller
08:34 PM Revision 13a023fd (cdmlib): ref #9359 update xmlgraphics-commons (only needed in cdmlib-print)
Andreas Müller
08:28 PM Revision 3078719c (cdmlib): minor
Andreas Müller
03:56 PM bug #9914 (Resolved): Series part in nomenclatural sources should have a space prefix if it starts with a letter
Andreas Müller
03:44 PM bug #9914 (Closed): Series part in nomenclatural sources should have a space prefix if it starts with a letter
... and if they are not purely numeric Andreas Müller
03:45 PM Revision 5f08d366 (cdmlib): ref #9914 add space before seriesPart in nom.refs.
Andreas Müller
03:21 PM bug #9913: TypeDesignationEditor: Sub collections without code show blank in the collection select
Collection select is fixed, fine.
But another critical error appeared:
the values of two different specimens ar...
Wolf-Henning Kusber

01/11/2022

09:49 PM Revision 8ae14d10 (cdm-server): removing jdk 7 stuff from memory service
Andreas Kohlbecker
02:55 PM Revision 2d14fa05 (utis-core): logging of store updates
Andreas Kohlbecker
12:45 PM bug #9913: TypeDesignationEditor: Sub collections without code show blank in the collection select
Problem solved, please review. Andreas Kohlbecker
12:45 PM bug #9913 (Resolved): TypeDesignationEditor: Sub collections without code show blank in the collection select
Applied in changeset commit:cdm-vaadin|48936d85bd57c3a6cbb45f2c9d0d47bc55380380. Andreas Kohlbecker
12:08 PM bug #9913 (Closed): TypeDesignationEditor: Sub collections without code show blank in the collection select
Andreas Kohlbecker
12:45 PM Revision 7602f1db (cdm-vaadin): fixing NPE
Andreas Kohlbecker
12:44 PM Revision 48936d85 (cdm-vaadin): fix #9913 fixing collection label in select lists
Andreas Kohlbecker

01/10/2022

02:51 PM Revision fcf7d716 (cdm-server): cleanup
Andreas Müller
02:42 PM Revision 7db3087c (cdm-dataportal): Update installation instruction link
Andreas Müller
01:25 PM bug #9912 (New): java.lang.ClassCastException: [Ljava.lang.String; cannot be cast to java.lang.String in TaxonGraphBeforeTransactionCompleteProcess L229
`TAXONNAME_NOMENCLATURALSOURCE` is an array, so below code line in `TaxonGraphBeforeTransactionCompleteProcess` fails... Andreas Kohlbecker
12:20 PM Revision 1372d044 (cdm-server): remove deprecated methods
Andreas Müller
11:45 AM Revision fe676284 (cdmlib): upgrading media-info-model to latest version 1.2.0
Andreas Kohlbecker

01/07/2022

10:57 AM Revision e5cb086b (cdmlib): minor
Andreas Müller

01/05/2022

03:39 PM bug #9911 (New): Expand area search to adjacent countries
Suggestion from David Merrick:
... Also you could have an "expand to adjacent countries" if the page knows for eac...
Andreas Müller
03:15 PM bug #9802: Label for min=max does not unify values in Matrix QuantitativeData label provider
Katja Luther wrote:
> > Also the label provider for the factual data view handles the issue correct. Is there a reas...
Andreas Müller
02:39 PM bug #9802: Label for min=max does not unify values in Matrix QuantitativeData label provider
> Also the label provider for the factual data view handles the issue correct. Is there a reason why we do not use th... Katja Luther
03:02 PM Revision 498bb6e4 (taxeditor): ref #9894: remove strange import
Katja Luther
02:24 PM Revision 72e2be95 (cdmlib): ref #9607 try metadata reading client side if error occurs server side
Andreas Müller
02:07 PM Revision 32b18aed (cdm-server): cleanup
Andreas Müller
02:02 PM Revision 68e2422c (cdm-server): Adapt organizationUrl
Andreas Müller
02:02 PM Revision 1bc53106 (cdm-server): remove PermGenSpace constants
Andreas Müller
01:04 PM feature request #9894 (Resolved): Make primary collector editable for field unit
This is implemented with a selection dialog, maybe it would be easier to use with a drop down, filled with the team m... Katja Luther
01:01 PM Revision 4faee5bc (taxeditor): ref #9894: add field primary collector and handle as described in ticket
Katja Luther
12:27 PM feature request #9910 (New): Add configurable flag for common name search in dataportal simple search
Some portals may want to have a common name search flag included in simple search (similar to include misaplication f... Andreas Müller
10:16 AM task #9909 (New): Think about using the checker framework to avoid e.g. NPEs
https://checkerframework.org/manual/ Andreas Müller

01/04/2022

03:17 PM bug #9882 (Resolved): Null argument when deleting description in bulkeditor
Katja Luther wrote:
> The original problem is solved, but there is another issue. The deletion of the description el...
Katja Luther
02:47 PM bug #9895 (Resolved): Multiple representations of the same entity after move of synonym
This is fixed,please review. Katja Luther
02:47 PM Revision cd505f6b (cdmlib): ref #9895: fix MRE when moving synonym to an already open taxon
Katja Luther
02:15 PM Revision 495cf16b (cdmlib): ref #9907: fix missing treeIndex in taxonNodeDto - continue
Katja Luther
01:49 PM bug #9907 (Resolved): NPE when trying to create polytomous key
This should be fixed. Katja Luther
01:44 PM bug #9907: NPE when trying to create polytomous key
This exception is caused by the missing treeIndex in nodeDto. Katja Luther
01:44 PM bug #9907 (Closed): NPE when trying to create polytomous key
mail Murat Erdem Guzel:
We tried to "generate polytomous key" for our group. However, we got the following error m...
Katja Luther
01:48 PM bug #9900 (Resolved): Null values in agent search dialog
This should be fixed. Katja Luther
01:47 PM feature request #9908 (New): Add timeperiod to credits
for further explanation see #9906#note-1 Andreas Müller
01:45 PM Revision 523bd6bc (cdmlib): ref #9907: fix missing treeIndex in taxonNodeDto
Katja Luther
12:21 PM Revision 1cc04f46 (taxeditor): change product version
Katja Luther
11:07 AM Revision 4716220c (taxeditor): minor
Katja Luther
10:22 AM Revision ac1d2808 (taxeditor): minor
Katja Luther
09:52 AM feature request #9906: Implement credits in dataportal
ERS:
eine Frage zur Portal-Gestaltung: im Cichorieae-Portal gibt es auf einzelnen Taxon-Seiten die Kategorie “Cred...
Andreas Müller
09:49 AM feature request #9906 (New): Implement credits in dataportal
Credits are editable in TaxEditor but currently not yet visible in the CDM dataportals. However, in future they will ... Andreas Müller

01/03/2022

10:08 PM bug #9905 (In Progress): Parser is slow for names with authorteams
Andreas Müller
09:58 PM bug #9905 (Closed): Parser is slow for names with authorteams
Probably the reason is that potential deduplication candidates are not found correctly and the list of candidates is ... Andreas Müller
04:48 PM Revision 6c29ac64 (taxeditor): minor
Andreas Müller
04:48 PM Revision 0489e98a (taxeditor): ref #9359 update iiif-apis and javassist version in taxeditor (cont.)
Andreas Müller
03:31 PM Revision bbab5719 (taxeditor): minor
Katja Luther
03:13 PM Revision 3b421286 (taxeditor): revert removing commons.httpclient in rcp.target
Katja Luther
03:04 PM Revision c6e3c294 (cdmlib): ref #9359 update ant version in cdmlib
Andreas Müller
03:01 PM Revision bfa2a878 (taxeditor): ref #9359 update iiif-apis and javassist version in taxeditor
Andreas Müller
02:53 PM Revision 98b42ca6 (cdmlib): minor
Andreas Müller
02:52 PM Revision 3837f479 (cdmlib): ref #9359 update doxia, objenesis, iiif-apis, xom, Saxon-HE and javassist version in cdmlib
Andreas Müller
02:47 PM Revision c311c134 (taxeditor): minor
Andreas Müller
02:47 PM Revision 1fbecc37 (taxeditor): ref #9359 fix junit version in taxeditor.test build.properties
Andreas Müller
02:46 PM Revision 53aa6cb3 (taxeditor): ref #9359 revert httpclient.version to httpcomponents.version in taxeditor
Andreas Müller
02:40 PM Revision 39287958 (cdmlib): ref #9359 update httpcore version in cdmlib
Andreas Müller
02:23 PM Revision f2e2fe71 (taxeditor): ref #9359 fix artifactID for httpcore in taxeditor
Andreas Müller
02:12 PM Revision 797afa38 (taxeditor): ref #9359 update httpclient, httpclient-cache and httpcore version in taxeditor
Andreas Müller
01:54 PM Revision 284634e7 (taxeditor): adapt feature to new version of apache httpcomponents - continue
Katja Luther
01:12 PM Revision 92d78f9c (taxeditor): adapt rcp.target to new version of apache httpcomponents
Katja Luther
12:55 PM Revision 68c6de2c (taxeditor): adapt feature to new version of apache httpcomponents
Katja Luther
12:11 PM Revision 0f130bb7 (taxeditor): revert rename of jre product definition
Katja Luther
11:38 AM Revision 1680ec19 (taxeditor): minor, only test update handler
Katja Luther

12/23/2021

10:52 AM bug #9904 (Closed): NullPointerException (NPE) in ListView with filter name="Stephano"
fixed!
Now the validation errors are visible gain:
![](picture935-1.png)
Andreas Kohlbecker
10:51 AM bug #9904 (Resolved): NullPointerException (NPE) in ListView with filter name="Stephano"
Applied in changeset commit:cdmlib|00e4c79fbb7ae6fa6a5c911072ab1b6e0d8ccd7a. Andreas Kohlbecker
10:46 AM bug #9904: NullPointerException (NPE) in ListView with filter name="Stephano"
and is caused by a validation error ("Inconsistent type designations") in which case the `summaryText` in `Registrat... Andreas Kohlbecker
10:39 AM bug #9904: NullPointerException (NPE) in ListView with filter name="Stephano"
this happens for the registration http://phycobank.org/4680 Andreas Kohlbecker
10:34 AM bug #9904 (Closed): NullPointerException (NPE) in ListView with filter name="Stephano"

~~~
[phycobank] 10:31:11,561 DEBUG [qtp1161667116-25][eu.et.cd.va.pe.AccessRestrictedViewControlBean] - allowing...
Andreas Kohlbecker
10:51 AM Revision 00e4c79f (cdmlib): fix #9904 avoiding null value for RegistrationDT0.summaryTaggedText
Andreas Kohlbecker
10:04 AM Revision 54d7e850 (cdm-vaadin): proper logging instead of system.out
Andreas Kohlbecker
10:03 AM Revision d6a88817 (cdm-vaadin): cleaning up obsolete class
Andreas Kohlbecker

12/22/2021

12:08 AM Revision 8def85fa (taxeditor): update spring version in MANIFEST.MF and build.properties
Andreas Müller
12:01 AM Revision 2b7f1be4 (taxeditor): ref #9359 updating jackson and fop to latest version in taxeditor
Andreas Müller

12/21/2021

11:56 PM Revision 8f7ca08d (taxeditor): ref #9359 updating junit and joda-time to latest version in taxeditor (cont.)
Andreas Müller
11:50 PM Revision c31fcd9c (taxeditor): ref #9359 updating commons-lang3 to latest version in taxeditor (cont.)
Andreas Müller
11:23 PM Revision 594bfa10 (taxeditor): remove dozer from gitattributes
Andreas Müller
11:23 PM Revision 9884d3db (taxeditor): ref #9359 updating junit and joda-time to latest version in taxeditor
Andreas Müller
11:22 PM Revision fd27a29d (cdmlib): ref #9359 updating junit and joda-time to latest version in cdmlib
Andreas Müller
11:08 PM Revision 92605e20 (taxeditor): ref #9359 updating commons-lang3 to latest version in taxeditor
Andreas Müller
11:07 PM Revision e2a36780 (cdmlib): ref #9359 updating commons-lang3 to latest version in cdmlib
Andreas Müller
11:03 PM Revision 6b7f04a6 (taxeditor): ref #9359 updating jackson and fop to latest version in taxeditor
Andreas Müller
11:01 PM Revision 2425ff4f (cdmlib): ref #9359 updating jackson, dozer, fop and guava to latest version in cdmlib
Andreas Müller
10:30 PM Revision 5ba4170a (taxeditor): cleanup pom developer data and ci URL to https
Andreas Müller
10:24 PM Revision 886a4b2e (cdmlib): ref #9359 update spring security OAuth2 to 2.5.1 in cdmlib
Andreas Müller
10:23 PM Revision a623e437 (cdmlib): update organizationURL
Andreas Müller
09:56 PM Revision c6e48a0a (taxeditor): ref #9359 update spring to 4.3.30 in taxeditor and use mvn properties for spring version
Andreas Müller
09:50 PM Revision 46ddc021 (cdmlib): ref #9359 update spring to 4.3.30 in cdmlib
Andreas Müller
09:37 PM Revision 3267b6d8 (taxeditor): cleanup
Andreas Müller
06:36 PM feature request #9903 (Closed): disable common name search in defaults
Andreas Kohlbecker
06:28 PM feature request #9903 (Resolved): disable common name search in defaults
Applied in changeset commit:cdm-dataportal|868cf790da78a99a626c7544a5ef512cdd28e002. Andreas Kohlbecker
06:26 PM feature request #9903 (Closed): disable common name search in defaults
Common Name Suche sollte m.E. auf jeden Fall ausgeschaltet sein per Default. Andreas Kohlbecker
06:28 PM Revision 868cf790 (cdm-dataportal): fix #9903 common name search disabled by default
Andreas Kohlbecker
06:13 PM Revision 058c75f7 (taxeditor): ref #9359 httpcomponents to 4.5.13 and spring-security to 4.2.20 in taxeditor
Andreas Müller
06:12 PM Revision 58cfb4c1 (cdmlib): cleanup
Andreas Müller
06:11 PM Revision 5bda5597 (cdmlib): ref #9359 httpcomponents to 4.5.13 and spring-security to 4.2.20 in cdmlib
Andreas Müller
05:57 PM Revision 9c73e70f (cdmlib): ref #9359 update commons-compress to 1.21
Andreas Müller
05:54 PM Revision 624722d8 (cdm-server): cleanup
Andreas Müller
02:03 PM feature request #9902 (New): Add possibility to clear area filter in advanced search
Request from Davie Merrick: "The place filter works well. Can I suggest there be an option to clear the filter. " Andreas Müller
09:00 AM Revision eee93087 (taxeditor): ref #9900: fix consistent use of abbrev title for authors of nomenclatural reference - continue
Katja Luther

12/20/2021

10:06 AM Revision 2e454d0f (cdm-server): revert usage of DefaultParser/GnuParser()
Andreas Müller

12/19/2021

01:02 AM Revision 847b908a (cdm-server): remove some more PermSize and MaxPermSize
Andreas Müller
12:54 AM Revision b396b65c (cdm-server): Replace deprecated GnuParser by DefaultParser
Andreas Müller
12:53 AM Revision d8a13c97 (cdm-server): cleanup
Andreas Müller

12/17/2021

11:54 PM Revision 3baaf1b2 (cdmlib): ref #9607 remove redundant method in IMediaInfoFactory
Andreas Müller
11:54 PM Revision f37ad6bb (cdmlib): cleanup
Andreas Müller
02:59 PM bug #9901 (In Progress): Remove unique key Media_RightsInfo.rights_id
Andreas Müller
02:59 PM bug #9901 (In Progress): Remove unique key Media_RightsInfo.rights_id
Some DBs still have this key but as rights are reusable now this is not correct.
~~~
ALTER TABLE `Media_RightsInf...
Andreas Müller
01:36 PM Revision d82999cd (taxeditor): ref #9900: fix consistent use of abbrev title for authors of nomenclatural reference
Katja Luther
11:42 AM bug #9900 (Closed): Null values in agent search dialog
mail AM:
schon seit längerem ist mir aufgefallen, dass bei der Anzeige von Personen im Dialog etwas nicht stimmt. ...
Katja Luther

12/16/2021

04:28 PM Revision a9ee539b (cdm-dataportal): Merge tag '5.28.1' into develop
tagging 5.28.1 Andreas Kohlbecker
04:28 PM Revision 5726a297 (cdm-dataportal): Merge branch 'hotfix/5.28.1'
Andreas Kohlbecker
04:28 PM Revision 4f63f56d (cdm-dataportal): diabling WoRMS due to unresolved potential copyright issues
Andreas Kohlbecker
04:26 PM Revision 936c6844 (cdm-dataportal): diabling WoRMS due to unresolved potential copyright issues
Andreas Kohlbecker
01:52 PM Revision 22845878 (cdmlib): fix exception in delete of specimen
Katja Luther
01:17 PM Revision 95fa5b49 (utis-core): updating log4j configuration
Andreas Kohlbecker
01:05 PM Revision a2f52132 (utis-core): replacing all system.err/out to proper logging
Andreas Kohlbecker
11:57 AM Revision a9d074d6 (utis-webapp): ref #9899 updating log4j to latest version >=2.16.0
Andreas Kohlbecker
11:56 AM Revision 02d98cb4 (utis-core): ref #9899 updating log4j to latest version >=2.16.0
Andreas Kohlbecker
11:55 AM Revision bc1fb5b4 (utis-core): gitignore
Andreas Kohlbecker
 

Also available in: Atom