EDIT

ref #7648 fixing problems in TaxonGraphTest

ref #7648 common base class AbstractHibernateTaxonGraphProcessor to deduplicate TaxonGraph methods

ref #7648 allowing to set the TaxonGraphHibernateListener inactive - only for test environments

ref #7648 solving session corruption problems in test suite for TaxonGraphHibernateListenerTest

ref #7648 fixing inconsistency in test data and improving logging

ref #7648 introducing CdmPreferenceLookup for cached access to the CdmProperty with predicate 'TaxonGraphSecRefUuid' and others

• using this Preference in TaxonGraphDaoHibernateImpl and TaxonGraphBeforeTransactionCompleteProcess
• adapting tests accordingly...

ref #7648 cleaning up and attempting to fix TaxonGraphService test setup

ref #7648 all TaxonGraph updating done in a BeforeTransactionCompletionProcess implementation - TaxonGraphHibernateListener is working now

ref #7648 TaxonGraphService as dao and TaxonGraphObserver as TaxonGraphHibernateListener

fix #7795 untilis xml DataSets can optionally be created without "[NULL]" values

minor issue with return type of listToTaxonRelationships() fixed

ref #7745 childNodesOf implemented

ref #7745 add subtree parameter to freetext search methods

ref #7745 fix bug in queries with subtree, some first test and cleanup

ref #7745 add subtree filter to taxon search (not yet tested for subtree != null)

ref #7745 implement subtree filter for ClassificationController.rankSpecificRootNotes and .childNodes

avoiding too extensive logging by commenting all hardcoded loglevels

ref #7531 intoducing TargetEntityStates to replace plain cdm enities in the permission voting process

fix #7525 replacing Criteria lists by cdm Restrictions in CdmEntityDaoBase.*ByTitle() methods

cleanup

cleanup

cleanup

ref #7478 add test to pro parte hql search

cleanup

improve readability of test and fix test for common names

cleanup

cleanup

use long instead of int (cont.)

use long instead of int (cont.)

use long instead of int in some of the count methods, use base methods for pageSize/number and order for criteria and queries, cleanup

ref #3560 add includeUnpublished for taxon relationships

fix #7467 taxon name parts lookup method with support for wildcard searches, TaxonNameParts and filter

ref #3560 implement publish in taxon service by name search

cleanup

ref #3560 tests for unpublished listRankSpecificRootNodes

cleanup

ref #3560 implement unpublished for listSiblings in service and remote (no tests yet)

ref #3560 implement unpublished for rankSpecificRootNode in service and remote (no tests yet)

cleanup

cleanup

cleanup

ref #3560 implement publish filter for ClassificationDao.listChildrenOf and .countChildrenOf

ref #3560 implement publish filter for TaxonNodeDao.listChildrenOf and .countChildrenOf

minor

ref #6752 stricter handling of Reference.setDatePublished (only for calling methods)

ref #6752 strictly use VerbatimTimePeriod where possible

cleanup

ref #6581 add TaxonName.nomenclaturalSource_id and adapt constructor visibility for DescriptionElementSource

ref #7238 fix givenname camelCase issue in AgentDaoImplTest

ref #7238 rename lastName and firstName

add the possibility to search for classifications in getTaxonNodeUuidAndTitleCacheOfAcceptedTaxaByClassification

ref #6241 replaced @created by @since in cdmlib

fixing TeamAutoBeanInitializer mapping in test class

ref #7377 modifying test to avoid autoflush

more bean initialization tests & found bug ref #7375

ref #6241 change @date to @since (fix)

ref #6241 change @date to @since

also revert the test changes

revert null check in merge

moving AlternativeUnitilsJUnit4TestClassRunner to org.unitils

ref #7331 test created and loging more details at level TRACE

fix #7323 adding missing uuid match check in furtherVotingDescissions()

cleanup

silencing chatty test

silencing chatty test

ref #7203 add performance debugging for TaxonNodeFilter.areaFilter

ref #7166 remove distributions with absent status from filter results

ref #7175, ref #7180, ref #7165, ref #7166 Adapting TaxonNodeFilter for unpublished, minMaxRank and areas

cleanup

fix #7166 fixing test

fix #7166 temporarily fixing test

fix #7173 RegistrationDao methods support for sections (with test)

fix #7166 code restructuring

fix #7166 Implement area filter for TaxonNodeFilter

ref #7165 Add rank filter to TaxonNodeFilter

• Added JUnit test

cleaner CdmAuthority constructor

fix #7026 RegistrationVoter with further voting deccision for registrationStatus

fix #7027 consistent toString method for CdmAuthorities and more tests

fix DatabaseTypeEnumTest

intoducing CdmAuthorityParsingException to avoid invalid use of non api sun.security.provider.PolicyParser.ParsingException

fix #7021 excluding not protected cache fields from modification check in CdmSecurityHibernateInterceptor

fix #7018 ref #7020 simple permission voter and authorities for SpecimenOrObservationBase implemented, more complex voter implementation postponed

ref #7018 ref #7016 turning the not needed TypeDesignationVoter into a SpecimenOrObservationBaseVoter

ref #7016 implementing TypeDesignationVoter and more robust permissions:

• avoiding string based cdm authorities
• full test set for CdmPermissionClass

ref #6754 ref #6755 add includeRootNodes and fix count

ref #6754 fix taxon node filter tests

ref #6754 improve taxon node filter

ref #6754 repair zip creation for large datasets

minor

ref #3734 fix compilation issue

ref #6630 and ref #6368 remove generics from TaxonName

ref #6630 unified all taxon name cache strategies except for ViralNameDefaultCacheStrategy

fix #6368 rename table and class TaxonNameBase

ref #6368 remove TaxonNameBase subclasses

Merge branch 'develop' into feature/cdm-4.7

Conflicts:
cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/Feature.java

cleanup

ref #6612 PropertyNameMatchMode to Restriction class which contains the values to be tested

#6612 generic dao list method providing a flexible multi property filter:

• PropertyNameMatchMode class introduces
• AbstractPagerImpl.limitStartforRange() to replace hasResultsInRange()

ref #6612 implement count for listByRef and add implement filtering by status in listByRef

ref #6612 implemented list (ref ...) for RegistrationDaoHibernateImpl