Activity
From 05/18/2022 to 06/16/2022
06/16/2022
- 11:05 PM Revision f5f8c7e7 (cdmlib): ref #10067, ref #10077 remove javassist as bytecode provider from cdmlib (fix pom)
- 10:56 PM Revision 5e6cc79c (cdmlib): minor
- 10:53 PM Revision fbc25777 (taxeditor): cleanup
- 10:46 PM Revision ea704d19 (cdm-vaadin): cleanup
- 10:31 PM Revision da5e6dc7 (cdmlib): cleanup
- 10:29 PM Revision ac512a79 (cdmlib): ref #10067, ref #10077 remove javassist as bytecode provider from cdmlib
- 09:50 PM bug #10075: Fix deserialization exception for bytebuddy base hibernate SerializableProxy
- Please review.
- 09:50 PM bug #10075: Fix deserialization exception for bytebuddy base hibernate SerializableProxy
- Fixed with a workaround by overriding the class net.sf.ehcache.util.PreferredLoaderObjectInputStream which does not c...
- 09:47 PM bug #10075 (Resolved): Fix deserialization exception for bytebuddy base hibernate SerializableProxy
- Applied in changeset commit:taxeditor|9ee1ca440a5bbe003ed1c34e8abcc9f76ec97533.
- 04:50 PM bug #10075: Fix deserialization exception for bytebuddy base hibernate SerializableProxy
- it happens in readObject0.readOrdinaryObject.readSerialData.defaultReadFields.readObject0.(TCArray)checkResolve(readA...
- 02:51 PM bug #10075 (Closed): Fix deserialization exception for bytebuddy base hibernate SerializableProxy
- ... this is related to hibernate upgrade to v5.4 (#10067)
This happens when deserializing a org.hibernate.proxy.po... - 09:47 PM Revision 9ee1ca44 (taxeditor): fix #10075 fix deserialization by overriding PreferredLoaderObjectInputStream from ehcache
- 08:48 PM Revision 15aa7a2c (cdmlib): cleanup
- 08:34 PM task #10077 (New): upgrade ehcache to 3.x
- Probably blocked by Spring upgrade to 5.x (#10216).
There is probably a duplicate #9207 which points out size, gro... - 08:33 PM Revision 35d4b554 (cdmlib): move ehcache from model to service
- 08:30 PM Revision 317ec988 (cdmlib): cleanup
- 05:51 PM Revision f73ae1d9 (cdmlib): ref #10067 add bytecodeprovider handling to CdmApplicationController
- 05:50 PM Revision 107abc23 (cdmlib): cleanup
- 04:42 PM Revision 9fb87bef (cdmlib): ref #10076: fix taxonnodeDto creation for nodes without taxon and parent
- 04:40 PM bug #10076: Exception when opening character matrix with classification as root node
- This problem appears when the root node of the descriptive dataset is a classification, which has no parent node and ...
- 04:39 PM bug #10076 (Closed): Exception when opening character matrix with classification as root node
- mail Konstantina Koutroumpa:
Dear Katja and Andreas,
I am getting an error when opening the character matrix in... - 11:20 AM bug #8343: potential timezone problem in application stack
- Locally I added the timezone to the out put and for http://phycobank.org/100158 the timezone was CEST and for http:/...
- 09:14 AM bug #8343: potential timezone problem in application stack
- Andreas Müller wrote in #note-9:
> Andreas Kohlbecker wrote in #note-8:
> > Andreas Müller wrote in #note-7:
> > > Is... - 08:36 AM feature request #10074 (New): Areas for common names should be a set
- mail ERS:
Hallo,
bei der Eingabe von Common Names ist mir gerade aufgefallen, dass es die Möglichkeit geben sol...
06/15/2022
- 01:06 PM Revision 3a976bf6 (taxeditor): cleanup
- 12:05 PM Revision 00ee5645 (taxeditor): ref #9359 upgrade maven-antrun-plugin to 3.1.0 in taxeditor
- 12:04 PM Revision 25436749 (taxeditor): cleanup
06/14/2022
- 10:52 PM Revision bedb5de8 (taxeditor): ref #9359 remove old Spring Source repositories from taxeditor cdmlib and local
- 10:48 PM Revision d336a791 (taxeditor): java-doc
- 04:21 PM Revision 3b1474a6 (taxeditor): ref #9359 add javax.annotation to import packages in MANIFEST.MFs
- 04:00 PM Revision 0561a2fc (taxeditor): cleanup
- 03:58 PM Revision df1cedb8 (taxeditor): ref #9359 add commons-collections4 to taxeditor dependencies
- 02:26 PM Revision fe32c5ea (taxeditor): remove store from required bundles in store MANIFEST.MF
- 12:31 PM Revision 907e7ec4 (cdmlib): use tuple class as return type
- 09:46 AM Revision ac2536fb (cdmlib): fix hibernate problem with returntype and taxonnodeDto for missing publish flag
- 12:03 AM Revision 328d91f0 (taxeditor): ref #9359 remove log4j12 exports from taxeditor.cdmlib MANIFEST.MF
06/13/2022
- 11:55 PM Revision 7872e2e8 (taxeditor): cleanup
- 11:06 PM Revision 926a7e65 (taxeditor): ref #9359 add taxeditor.local log4j2 to gitignore
- 11:03 PM Revision 23a596af (taxeditor): cleanup
- 11:03 PM Revision 62966b18 (taxeditor): fix remotingApplicationContext.xml
- 11:01 PM Revision 002dd8ef (taxeditor): remove whitespace from workbench MANIFEST.MF
- 02:21 PM Revision 4dcfee27 (cdm-dataportal): adapt test
- 02:03 PM Revision d0b78a25 (cdm-dataportal): ref #9359 upgrade java dependencies in dataportal (except for selenium)
- 10:46 AM bug #7635: ObjectNotFoundException during delete of synonym and name
- Maybe this is a similar problem:
Hallo,
Caryophyllales_spp
Habe bei Sebsebia orthacantha, Synonym Kyphocarpa ort... - 10:26 AM Revision c0497e2d (cdmlib): ref #10071: add statusNote to dto again
06/10/2022
- 05:59 PM Revision 90a40d1d (cdmlib): ignore IpniServiceTest again
- 05:09 PM Revision 8866e92d (cdmlib): cleanup
- 05:00 PM Revision 05137c06 (cdmlib): update PresenceAbsenceTerm.csv, remove double whitespaces for invasive terms
- 04:59 PM Revision 33724181 (cdmlib): update lineendings
- 04:21 PM Revision b5f7b1f2 (cdmlib): cleanup
- 04:20 PM Revision f407d3fa (cdmlib): cleanup
- 04:17 PM Revision 01e98b70 (cdmlib): ref #10067, #10070 reassign javassist as bytecode provider in cdmlib
- 03:54 PM Revision 8757f365 (cdmlib): revert changes in taxonnodeDto.noteStatus
- 03:51 PM Revision d7b4d78c (cdmlib): revert changes in taxonnodeDto.noteStatus
- 03:39 PM Revision 5cf11d96 (cdm-vaadin): remove unnecessary component scan filters
- 03:06 PM Revision e9b0c758 (cdmlib): ref #10073 remove docbkx related files from gitattributes
- 03:06 PM Revision c5af637e (cdmlib): ref #9359 fully remove hsqldb to be supported by cdmlib, we only use h2 now (cont 2)
- 02:55 PM task #10073 (New): Remove all docbkx related code/files from cdmlib
- ... and maybe others. They can be found at {parent}\src\docbkx\ and in parent-pom.
Probably also the changes folde... - 02:30 PM Revision 3b6301d5 (cdmlib): revert changes to get statusNote
- 01:53 PM Revision d4f676c6 (cdmlib): adapt test data
- 01:52 PM Revision 60474dec (cdmlib): remove the hsql files again
- 01:30 PM Revision a69f97f1 (cdmlib): ref #10071: add statusNote to dto
- 01:13 PM Revision 9139d0dd (cdm-vaadin): adapt spring xsd versions in all other applicationContexts
- 01:05 PM Revision 1521fa2e (cdmlib): revert some changes added accidently
- 01:00 PM Revision 4df43dd4 (cdmlib): resolve the merge
- 12:54 PM Revision cd3e6740 (cdmlib): white space problems
- 12:54 PM Revision 6c541cef (cdmlib): adapt tests to added description
- 12:36 PM Revision 40dd7cc6 (cdmlib): cleanup
- 12:26 PM Revision b1d8767d (cdmlib): ref #9359 fully remove hsqldb to be supported by cdmlib, we only use h2 now (cont)
- 12:22 PM Revision 6545b1d5 (cdmlib): ref #9359 fully remove hsqldb to be supported by cdmlib, we only use h2 now
- 12:16 PM Revision 475d237f (cdmlib): ref #9359 fully remove hsqldb to be supported by cdmlib, we only use h2 now
- 11:45 AM Revision db707134 (cdmlib): ref #10071: additional constructor and test added
- 11:43 AM Revision 6e0c944e (cdmlib): ref #9359 temporarily neglect LoggingConfigurer
- 11:21 AM Revision 4f248b8f (cdm-vaadin): adapt spring xsd versions in applicationContext-service-integration.xml
- 11:06 AM Revision 2506b246 (cdmlib): cleanup
- 11:04 AM Revision 80d999e5 (cdmlib): remove h2-datasource.xml as it is not used anymore
- 10:56 AM Revision 2d405aee (cdmlib): remove applicationContext.xml from remote test base directory
- 10:45 AM Revision 56dd942a (cdmlib): remove all java and some licence/readme from gitattributes
- 10:10 AM Revision a23f2969 (cdm-vaadin): adapt spring xsd versions in cdm-vaadin-servlet.xml
- 08:09 AM Revision ac9cae76 (cdmlib): ref #10067 byteCodeProvider for HibernateConfiguration and factory methods
06/09/2022
- 10:16 PM Revision 84808e22 (cdmlib): ref #9359 add exclusions to javax.mail and jena-tdl
- 09:39 PM Revision 222315aa (taxeditor): ref #9359 adapt taxeditor.local to log4j 2
- 07:32 PM Revision 661705c1 (taxeditor): ref #9359 fix Logger handling in some classes for which replace did not work (cont.)
- 07:25 PM Revision ba10d0e9 (taxeditor): ref #9359 fix Logger handling in some classes for which replace did not work
- 07:16 PM Revision 94de228d (taxeditor): minor
- 07:15 PM Revision 2bba4a19 (taxeditor): ref #9359 import log4j2 in some TaxEditor projects (fix)
- 07:12 PM Revision 9a6b2310 (taxeditor): ref #9359 import log4j2 in some TaxEditor projects
- 06:27 PM Revision d83fc07f (taxeditor): ref #9359 upgrade TaxEditor to log4j2 (adapt workbench to new package)(cont)
- 06:16 PM Revision db825808 (taxeditor): ref #9359 upgrade TaxEditor to log4j2 (add exported packages)
- 06:09 PM Revision e0ef5fb8 (taxeditor): ref #9359 upgrade TaxEditor to log4j2 (cont)
- 06:08 PM Revision 7de7dd91 (taxeditor): cleanup
- 03:34 PM Revision 50935afd (taxeditor): ref #9359 upgrade TaxEditor to log4j2 (adapt workbench to new package)
- 03:27 PM Revision f274f083 (taxeditor): ref #9359 upgrade TaxEditor to log4j2
- 02:45 PM Revision ec602490 (taxeditor): ref #9359 adapt log4j handling in TaxEditor (cont.)
- 01:56 PM Revision f97eecfd (taxeditor): ref #9359 adapt log4j handling in TaxEditor (cont.)
- 01:51 PM Revision b6f5d1a6 (cdmlib): ref #9359 add dependency management for error_prone_annotations
- 01:48 PM Revision 47f89b8f (taxeditor): ref #9359 adapt log4j handling in TaxEditor
- 01:37 PM Revision 15daf02c (taxeditor): ref #9359 update slf4j logging in TaxEditor
- 01:31 PM Revision 13307324 (cdmlib): minor
- 01:30 PM Revision 1feff2df (cdmlib): ref #9359 upgrade spring-security-oauth2 to latest version
- 01:25 PM Revision eadd0f35 (cdmlib): ref #9359 upgrade docx4j to latest version
- 01:23 PM Revision a820701f (cdmlib): ref #9359 upgrade plexus-utils to latest version
- 01:22 PM Revision e8694614 (cdmlib): ref #9359 upgrade Saxon-HE to latest version
- 01:21 PM Revision 94645f2d (cdmlib): ref #9359 replace slf4j-log4j12 by slf4j-reload4j
- 01:12 PM Revision 12c174d5 (cdmlib): ref #9359, ref #10072 some adaptations for log4j2
- 12:40 PM task #10072 (Closed): Upgrade fully to log4j2
- We already upgraded to log4j2 in #9359.
~~However, the class eu.etaxonomy.cdm.opt.config.LoggingConfigurer is not ... - 11:02 AM Revision 2b956f99 (cdmlib): #9359 update poi and xml-beans to latest version in cdmlib (cont.)
- 10:23 AM Revision c7d418c8 (cdmlib): ref #9359 upgrade docx4j to v8 and manage versions for plexus-classworlds and plexus-component-annotations
- 10:15 AM Revision 23de68fc (cdmlib): ref #9359 upgrade cdmlib to log4j 2
06/08/2022
- 03:02 PM Revision 427378b1 (cdmlib): #9359 update poi and xml-beans to latest version in cdmlib (cont.)
- 02:59 PM Revision f21c829a (cdmlib): #9359 update poi and xml-beans to latest version in cdmlib (cont.)
- 02:52 PM Revision c07f06a0 (cdmlib): #9359 update poi and xml-beans to latest version in cdmlib
- 02:39 PM Revision 9628a4a5 (taxeditor): #10009 add antlr again
- 01:55 PM Revision 7829b055 (cdmlib): ref #10067 change back bytecode provider to javassist in hibernate.cfg.xmls
- 01:53 PM Revision d8a4b95f (taxeditor): #10009 add lucene-core again
- 01:12 PM Revision 1c648453 (taxeditor): #10009 add hibernate-eners again
- 12:59 PM Revision 5a9cce4d (cdmlib): cleanup
- 12:59 PM Revision 3a1dbf7c (cdmlib): ref #10067 revert bytecode provider in hibernate.cfg.xmls
- 11:54 AM Revision 27dafab6 (cdmlib): minor
- 10:57 AM bug #10071: TaxonNodeDtos should be created directly not from taxon objects
- There were some follow up fixes, because the taxonnode dto created with SortableTaxonNodeQueryResult was not complete...
- 10:28 AM Revision e3d5927a (cdm-dataportal): minor
- 09:45 AM Revision 17e31533 (cdmlib): ref #10071: add node status to dto and implemented some tests
06/07/2022
- 05:42 PM Revision 6103abfd (taxeditor): ref #9359 update surefire plugin to 3.0.0-M7 in taxeditor (cont.)
- 05:37 PM Revision b84468fb (cdmlib): fix NPEs in DTO creation
- 03:08 PM Revision efa3824e (cdmlib): taxon node status needs to be added to the dto
- 02:39 PM Revision 02a32271 (cdm-dataportal): adapt test
- 01:19 PM bug #10033 (In Progress): For new FeatureTree only uuid is shown in dataportal
- 01:19 PM bug #10033 (Resolved): For new FeatureTree only uuid is shown in dataportal
- We need to adapt the taxeditor implementation, so that not the titlecache but the representation is used.
- 12:36 PM bug #10033: For new FeatureTree only uuid is shown in dataportal
- Terms contain an termrepresentation object, this is empty for terms/termcollections created in taxeditor. As a first ...
- 12:33 PM Revision 5f4a411c (cdmlib): ref #10033: if term has no representation use titlecache in termrepresentation_L10n
- 10:18 AM Revision f98660c3 (taxeditor): ref #9359 update surefire plugin to 3.0.0-M7 in taxeditor
- 09:52 AM Revision e629eadb (cdm-server): ref #9359 update surefire plugin to 3.0.0-M7 in cdm-server
- 09:50 AM Revision f05af282 (cdm-vaadin): ref #9359 update surefire plugin to 3.0.0-M7 in vaadin
- 09:49 AM Revision 7500a7a4 (cdmlib): ref #9359 update surefire plugin to 3.0.0-M7 in cdmlib
06/03/2022
- 05:50 PM Revision bfb84c1f (taxeditor): ref #9359 revert ehcache in taxeditor
- 03:45 PM Revision cc5425b9 (cdmlib): ref #9359 revert ehcache
- 03:45 PM Revision f12f1234 (cdmlib): minor
- 03:45 PM Revision 2f048780 (cdmlib): ref #10067 try to use javassit as bytecode provider
- 03:31 PM Revision 37a35ef6 (taxeditor): cleanup
- 02:35 PM Revision 29ce7c87 (cdmlib): ref #10071: create taxonnodeDTOs, add classification uuid
06/02/2022
- 02:33 PM bug #10034 (Resolved): Flat feature tree throws exception
- Now moving unsaved nodes is handled correctly. Please reviw.
- 02:30 PM Revision 46fc1532 (taxeditor): ref #10034: better handling of messages
- 09:41 AM bug #10071 (In Progress): TaxonNodeDtos should be created directly not from taxon objects
- This is done for the search of the taxonnodes for a specific taxon and also for the search in a subtree.
- 08:50 AM bug #10071 (Closed): TaxonNodeDtos should be created directly not from taxon objects
- The webservice getting the taxonnodeDtos for a taxon, first gets the taxon object and then creates the Dtos for the t...
- 09:34 AM Revision d9740b37 (cdmlib): ref #10071: create taxonnodeDTOs also for a subtree
- 08:51 AM Revision 23b979d9 (cdmlib): ref #10071: create taxonnodeDTOs directly from taxon uuid
06/01/2022
- 10:57 PM Revision 5cef85cb (taxeditor): #10009 add xml-apisand commons-pool and remove others from bin.includes
- 08:09 PM Revision e0a68352 (taxeditor): #10009 adapt c3p0 version number
- 05:26 PM Revision cd817281 (taxeditor): #10009 add c3p0 and other DB drivers
- 04:06 PM Revision b00a278f (cdmlib): ref #10067 add bytebuddy check to ProxyUtils
- 04:05 PM Revision 90d49e1d (cdmlib): cleanup
- 02:40 PM Revision 909ec7f3 (taxeditor): #9359, #10009 adding jackson-annotations and jboss-transaction-api_1.2_spec required for login and transactions
- 01:49 PM Revision 1c2181be (cdmlib): create taxonnodeDto directly with taxonUuid - continue
- 01:47 PM Revision 1a9f6e9d (cdmlib): create taxonnodeDto directly with taxonUuid
- 01:46 PM Revision 76701f6e (taxeditor): #9359, #10009 remove slf4j-log4j12
- 01:40 PM Revision 77fcaa65 (taxeditor): #9359, #10009 remove bean-utils from taxeditor.cdmlib (still exists in molecular.lib)
- 01:33 PM Revision 2e5e28a6 (taxeditor): #9359, #10009 update slf4j-log4j12 version in case we still need it
- 01:28 PM Revision 8f7929b5 (taxeditor): ref #10067, #10009 remove hibernate-jpa-2.1-api
- 01:23 PM Revision 112f74db (taxeditor): #10009 preliminary remove usertype.core
- 01:23 PM Revision 7c4f7d92 (taxeditor): move byte-buddy
- 01:20 PM Revision 2e76ec21 (cdmlib): ref #10067, ref #3722 add parent.childNodes to taxonNode property path to allow sortindex computation
- * should be preliminary
- 01:08 PM Revision b121cf83 (taxeditor): #10009 remove commons-collections4
- 12:54 PM Revision 7f99924f (cdmlib): ref #9359 removed duplicated manage version of jcl-over-slf4j in cdmlib
- 12:53 PM Revision 55c15c2d (cdmlib): ref #10067 remove direct dependencies to javassist and hibernate-jpa-2.1 from cdmlib-persistence
- 12:30 PM Revision 87a6f8ae (taxeditor): cleanup
- 12:27 PM Revision 6dbe2e69 (taxeditor): ref #10067, #9359, #10009 ignore CdmEntitySessionAwareTest.readPolytomousKeyDataFromNodes preliminary to allow full build
- 11:55 AM Revision 29655c12 (cdmlib): ref #10067 add byte-buddy dependency management
- 11:52 AM Revision f4a1eae4 (taxeditor): ref #10067, #10009 add byte-buddy (replaces javassist in hibernate)
- 11:51 AM Revision 82fc1145 (taxeditor): ref #10067, #10009 remove javassist (not used by hibernate anymore)
- 11:32 AM Revision db27d783 (taxeditor): #10009 remove spring-security-remoting again as it was not the reason
- 11:30 AM Revision bdf38d94 (taxeditor): ref #10067 adapt AbstractPersistentCollection serialVersionUID
- 11:25 AM Revision 8bd58569 (taxeditor): #10009 add spring-security-remoting again to try to solve serialVersionUID issue
- 11:06 AM Revision 06a1c881 (taxeditor): #10009 remove empty lines from bin.includes
- 10:53 AM Revision adc61987 (taxeditor): ref #10067, #9359, #10009 adapt taxeditor to new jakarta validation package
- 10:39 AM Revision 88d6cebc (taxeditor): ref #10067, #9359, #10009 remove not used entries in bin.includes and fix copying of jadira usertypes
- 10:29 AM Revision 0f6841be (taxeditor): ref #10067, #9359, #10009 adapt dependencies in taxeditor to latest versions in cdmlib and remove all dependencies not needed directly or for export
- * this version will not work yet
- 10:29 AM Revision 5056c949 (taxeditor): use static method in Conditions as suggested
- 10:29 AM Revision 9da105d2 (taxeditor): cleanup
- 10:25 AM Revision 2629c0c7 (cdmlib): ref #9359 manage version of jcl-over-slf4j in cdmlib
- 10:20 AM Revision af8867dd (cdmlib): ref #9359 upgrade xmlgraphics-fop and -commons to latest version in cdmlib
- 10:10 AM Revision 84a352cb (cdmlib): ref #9359 upgrade slf4j-xxx, commons-imaging, xercesImpl, hibernate-commons-annotations, javassist and jakarta.validation-api to latest version in cdmlib
- 09:09 AM Revision 428e9ed2 (taxeditor): ref #10034: check dirty nodes at the beginning of move operation.
- 01:58 AM bug #10034 (In Progress): Flat feature tree throws exception
- Andreas Müller wrote in #note-2:
> The problem does only seem to appear if you try to move a node before you save. I... - 12:53 AM Revision a7a4b973 (cdmlib): cleanup
- 12:00 AM task #10009 (In Progress): Cleanup dependencies in TaxEditor
05/31/2022
- 11:43 PM Revision e20f99e1 (taxeditor): ref #10067 add remoting specific parts to AbstractLazyInitializer again in taxeditor
- 11:30 PM Revision 58696c35 (taxeditor): ref #10067 adapt AbstractLazyInitializer to new hibernate version in taxeditor
- 11:28 PM Revision 59695a56 (taxeditor): cleanup
- 11:27 PM Revision 2760b7b4 (taxeditor): ref #10067 adapt AbstractPersistentCollection to new hibernate version in taxeditor
- 10:55 PM Revision cbadc5e7 (cdmlib): ref #9359 javadoc
- 10:53 PM Revision 99c1e469 (cdmlib): ref #9359 downgrade jboss-logging version to 3.4.3 as 3.5.0 requires java11 in cdmlib
- 10:40 PM Revision 57863fba (cdmlib): ref #9359 add dependency management for jboss-logging-processor in cdmlib
- 10:35 PM Revision 9805efb5 (cdmlib): ref #9359 revert removing jboss-logging-annotations in cdmlib
- 10:21 PM Revision 28218fda (cdmlib): ref #9359 upgrade jboss-logging to latest version and remove jboss-logging-annotations in cdmlib
- 09:47 PM Revision fe29288a (taxeditor): cleanup
- 09:36 PM Revision 383098c0 (taxeditor): cleanup
- 09:25 PM Revision d7670e34 (cdmlib): ref #9359 javadoc
- 09:25 PM Revision b86b1f35 (cdmlib): ref #9359 upgrade net.sf.ehcache/ehcache and org.json/json to latest version in cdmlib
- 06:12 PM Revision 159e7b25 (taxeditor): cleanup
- 03:38 PM Revision 73054571 (cdm-vaadin): ref #10067 adapt vaadin to new preference lookup handling
- 03:36 PM Revision 29f43e42 (cdm-vaadin): cleanup
- 03:32 PM Revision 0053a70e (taxeditor): minor
- 03:28 PM Revision c46c3b29 (cdmlib): ref #9359 upgrade xtream version 1.4.14->1.4.19 and remove xmlpull
- 03:17 PM Revision 88dee2f2 (cdmlib): ref #9359 downgrade xmlpull:xmlpull to 1.1.3.1 as 1.2.0 is only available in the JBoss repo which is currently switched off
- 03:16 PM Revision c240e90c (cdmlib): update metadata in parent pom
- 03:02 PM Revision d7905be5 (taxeditor): cleanup
- 03:00 PM Revision c1537fe2 (taxeditor): ref #10067 fix cacheStrategy compile issue in taxeditor
- 02:43 PM bug #10034: Flat feature tree throws exception
- Could not reproduce this problem with the actual nightly build.
Steps I tried to reproduce the problem:
* creat... - 02:12 PM Revision 519bff7b (cdmlib): ref #10067 replace deprecated hibernate validation NotEmpty by JPA version
- 01:51 PM Revision 533864b4 (taxeditor): ref #9359 cleanup gitignore
- 01:51 PM Revision cea8edf6 (taxeditor): ref #9359 update joda-time and mysql-connector-java to latest version in taxeditor
- 01:51 PM Revision a10b0a4e (taxeditor): ref #9359 update itextpdf to latest version in taxeditor
- 01:51 PM Revision 9e7380cc (taxeditor): ref #9359 update postgresql version to 42.3.6 in taxeditor (cont.)
- 01:51 PM Revision 9f485921 (taxeditor): ref #9359 update taxeditor to latest jackson version
- 01:51 PM Revision 502edc8a (taxeditor): ref #9359 update postgresql version to 42.3.6 in taxeditor
- 01:19 PM Revision a4de9dec (cdmlib): cleanup
- 01:12 PM feature request #10070 (New): Upgrade to hibernate 6+
- Before start upgrade to hibernate 5.6.x if not yet done. There is still a problem with the TaxonGraphHibernateListene...
- 01:08 PM Revision c3190812 (cdmlib): cleanup some base DAOs (rename, remove @Repository, ...)
- 12:44 PM bug #10056 (Resolved): Make Reference.Accessed deletable in TaxEditor
- Added a delete button, please review.
- 12:43 PM Revision ec8df5bb (taxeditor): ref #10056: add delete button to date element
- 12:14 PM Revision 0d59864d (cdmlib): cleanup
- 11:57 AM bug #10059: Link for stored under and identification on specimen page does not work correctly
- please review.
- 11:57 AM bug #10059: Link for stored under and identification on specimen page does not work correctly
- The path to the name needs to be processed by url(), then the correct link is used.
- 11:56 AM bug #10059 (Resolved): Link for stored under and identification on specimen page does not work correctly
- Applied in changeset commit:cdm-dataportal|c90f5440175074c6a350ad24fdaba0c0b6b9ae74.
- 10:22 AM bug #10059: Link for stored under and identification on specimen page does not work correctly
- This problem occurs because there is an element data-cdm-render-path containing the actual render path and this is us...
- 11:57 AM Revision 89c7717e (cdmlib): cleanup
- 11:56 AM Revision 9fd2eb7e (cdmlib): ref #9359 update joda-time, mariadb-java-client and mysql-connector-java to latest version in cdmlib
- 11:56 AM Revision c90f5440 (cdm-dataportal): fix #10059: the url needs to be processed with url()
- 11:36 AM Revision ce43a73f (cdmlib): ref #9359 update itextpdf to latest version in cdmlib
- 11:31 AM Revision 92c60bc1 (cdmlib): ref #9359 update jackson and guava to latest version in cdmlib
- 11:12 AM Revision 8c468c66 (cdmlib): ref #10067 adapt getAllPersistedClasses() to new hibernate metadata handling
- 10:43 AM Revision 10634f7c (cdm-dataportal): ref #10059: remove render path
- 10:16 AM Revision b220af7c (cdmlib): ref #9359 remove JBoss and apache incubating repository
- 10:13 AM Revision f9e2340e (cdmlib): ref #9359, #10067 upgrade pom to hibernate 5.4.33,hibernate-validator 6.2.3 and hibernate-search 5.11.10
- 08:28 AM task #10067 (In Progress): Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
- 08:16 AM feature request #10069 (In Progress): Upgrade hibernate search and lucene to hs6+ and lucene 8+
- Lucene 6+ seems to require hs6+ as there is a strange dependency on org.apache.lucene.document.Field.Index and ...Fie...
- 02:54 AM Revision f5a9c13f (cdmlib): ref #9359, #10067 add lucene-sandbox
- 02:52 AM Revision a95fbfcc (cdmlib): ref #9359, #10067 prepare Lucene6+ double queries
- 02:47 AM Revision 6155fd74 (cdmlib): ref #9359, #10067 remove SortFieldOptions
- 02:46 AM Revision 77f0d8ee (cdmlib): ref #9359, #10067 remove most index boosts
05/30/2022
- 11:56 PM Revision 273ff5e1 (cdmlib): cleanup
- 10:59 PM bug #5477 (Resolved): lucene index not updated in all cases after Taxon.addMisappliedName
- Was not fully fixed yet. Problem reoccurred after upgrading to hibernate-search 5.7.3. "ContainedIn" was still missin...
- 10:56 PM Revision 44e77359 (cdmlib): ref #7487 fix fulltext search for proparten MAN and partial MAN+synonyms
- 10:51 PM Revision 74b8cb5c (cdmlib): cleanup
- 10:47 PM bug #7487 (Resolved): Full text misapplied name search with area filter uses fixed relation type uuid
- Solved by adding also proparte and partial MAN and partial synonym relationship type subqueries. Also related to fina...
- 10:01 PM Revision e0a87ccd (cdmlib): ref #7487 adapt test
- 09:59 PM Revision 384235ed (cdmlib): ref #10067, ref #5477 add containedIn to relatedFrom and relatedTo to adapt to hibernate search 5.7.3
- 09:56 PM Revision 127e8d62 (cdmlib): cleanup
- 01:55 PM Revision de68a697 (cdmlib): minor
- 11:54 AM bug #10068 (Closed): Changing focus to accepted taxon does not work
- After opening a the name editor with focus on a synonym, the change of focus to the accepted taxon does not work, res...
- 11:27 AM bug #10060: Exception when adding kind-of-unit information to a field unit
- Katja Luther wrote in #note-1:
> I think we should not allow to set a kind of unit for a field unit, so I would remo... - 09:18 AM bug #10060 (In Progress): Exception when adding kind-of-unit information to a field unit
- I think we should not allow to set a kind of unit for a field unit, so I would remove the possibility to edit the kin...
- 10:20 AM Revision be473233 (cdmlib): cleanup
05/25/2022
- 03:05 PM Revision 40fc8ef7 (cdmlib): ref #9359 update postgresql version to 42.3.6 in cdmlib
- 01:39 PM Revision 0eeb74cb (cdmlib): ref #10067 update to hibernate 5.3 (cont.)
- 01:38 PM Revision 8b4d3b05 (cdmlib): ref #10067 update to hibernate-search 5.9
- 01:37 PM Revision 1a2ac5f4 (cdmlib): ref #10067 update to hibernate 5.3
- 12:56 PM Revision 009442e0 (cdmlib): cleanup
- 10:49 AM task #3722 (Resolved): Using @OrderColumn does not work in trees
- Probably solved, still needs intensive testing and code cleanup.
- 10:39 AM Revision bfab2edd (cdmlib): cleanup
- 10:39 AM Revision 857528e8 (cdmlib): ref #10067 improve handling of CdmPreferenceLookup (now ...Cache) to allow running with >1 entity managers (e.g. during maven tests)
- 10:29 AM feature request #7861 (In Progress): TaxonGraphHibernateListener: inject the ITaxonGraphDao into TaxonGraphBeforeTransactionCompleteProcess
- A somehow similar solution was implemented in 8c6b6172722d to adapt the TaxonGraphBeforeTransactionCompleteProcess to...
- 10:23 AM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
- Andreas Kohlbecker wrote in #note-10:
> "Session is closed!"-problem is solved now.
This fix was only a workaroun...
05/24/2022
- 07:44 PM Revision 56edf3ba (cdmlib): ref #10067, ref #3722, ref #8127 adapt handling of sortIndex after upgrade to hibernate5.2
- 07:06 PM Revision 665d2a60 (cdmlib): cleanup
- 08:58 AM Revision adabc933 (cdmlib): cleanup
05/23/2022
- 03:56 PM task #3722 (In Progress): Using @OrderColumn does not work in trees
- 10:57 AM task #3722: Using @OrderColumn does not work in trees
- sortIndex needs to be handled newly in hibernate5.2 so we can try to handle this ticket, too.
- 03:55 PM task #8127 (In Progress): [Reminder] to check if Hibernate Null Value bug still exists
- 03:55 PM task #8127: [Reminder] to check if Hibernate Null Value bug still exists
- HHH_9751_Util is closed in the meanwhile (https://hibernate.atlassian.net/browse/HHH-9751) and we probably can remove...
- 01:04 PM bug #10012 (Closed): Fix failing SpecimensTreeViewTest for dataportals after debian11 migration
- Tests are ok again, so we can close this ticket.
- 10:03 AM bug #10012: Fix failing SpecimensTreeViewTest for dataportals after debian11 migration
- php5 needed to be disabled and php7.4 enabled. This is done and pages with jstor image viewer as url are displayed co...
- 11:36 AM Revision 527d7260 (cdmlib): ref #10067 fix query type in UserDaoImpl
- 11:22 AM Revision 302ebb43 (cdmlib): ref #10067 adapt SortIndexUpdaterWrapperTest to new sortIndex handling
- 10:37 AM Revision 7ec0457c (cdmlib): ref #10067 remove hibernate-entitymanager from pom
- 10:34 AM task #10067: Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
- mvn clean install –fail-never (or just –fn)
https://maven.apache.org/surefire/maven-surefire-plugin/examples/single-... - 10:01 AM Revision 0880ebb5 (cdm-dataportal): ref #10012: reenable tests
- 09:24 AM Revision c0920090 (cdmlib): cleanup
05/22/2022
- 12:43 AM Revision 5405f3af (cdmlib): ref #10067 change to new hibernate Query class, adapt generics and use set Parameter instead old setXXX (cont.)
- 12:43 AM Revision 03677b90 (cdmlib): improve paging handling in multiple DAOs
- 12:40 AM Revision 0f18ef1d (cdmlib): cleanup
- 12:30 AM Revision ab8ef9d7 (cdmlib): ref #10067 change to new hibernate Query class, adapt generics and use set Parameter instead old setXXX
05/21/2022
- 03:29 PM Revision 543da901 (cdmlib): ref #10067 fix incorrect pageSize/number handling in findTaxaByName
- 03:28 PM Revision 48415466 (cdmlib): ref #10067 adapt test to new LIE message format
- 03:27 PM Revision d6e66697 (cdmlib): ref #10067 adapt getFlushMode() to getHibernateFlushMode()
- 03:26 PM Revision 477f1ca3 (cdmlib): ref #10067 adapt IdFieldOptions and SortFieldOptions to updated lucene/hibernate search version
- 03:25 PM Revision d3c4888e (cdmlib): ref #10067 adapt IdentifiableEntity.cacheStrategy handling to avoid problem with unhandled generic handling and transient getter
- 03:21 PM Revision b82005b4 (cdmlib): ref #10067 update to hibernate 5.2.18 and jadira usertypes 7.0.0.CR1
- 02:34 PM Revision 2d32f71a (cdmlib): cleanup
05/20/2022
- 10:00 PM Revision 56a58ebe (cdmlib): cleanup
- 09:18 PM Revision 2a40b437 (cdmlib): cleanup
- 06:03 PM task #10067 (Closed): Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
- https://stackoverflow.com/questions/50207195/how-to-upgrade-hibernate-from-version-4-3-to-5-2-for-migration-to-jdk-10...
- 05:50 PM Revision aee4e5c0 (cdmlib): ref #9497 fix some issues in PasswordResetServiceTest to make it more stable
- 05:32 PM Revision cca6cdd9 (cdmlib): cleanup
- 05:30 PM Revision 6d460721 (cdmlib): fix BibliographicAuthorParserTest encoding
- 02:50 PM task #10064 (Resolved): Upgrade cybertaxonomy.org to Drupal9
- cybertaxonomy.org is updated to 9.3 and using core-recommended (see https://github.com/drupal/core-recommended), the ...
05/18/2022
- 11:05 AM feature request #10066 (New): Secundum reference should be clickable
- The secundum reference should be clickable to open the details of the reference.
Also available in: Atom