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From 12/23/2021 to 01/21/2022

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12:09 AM bug #8343: potential timezone problem in application stack
Andreas Kohlbecker wrote in #note-8:
> Andreas Müller wrote in #note-7:
> > Is this solved in the meanwhile? https://...
Andreas Müller

01/20/2022

11:56 PM bug #9921 (Resolved): manage/Action.jsp broken
Please review. Andreas Müller
11:35 PM feature request #694: FeatureTreeService and DescriptionElement implemented
please review Andreas Müller
11:33 PM bug #9900: Null values in agent search dialog
... upps I just realize that, when editing a team and open the dialogue to add a new team member the problem still ex... Andreas Müller
11:11 PM bug #9900 (Feedback): Null values in agent search dialog
The null is not there anymore so the ticket seems to be fixed.
I only wonder why there was so much code attached. ...
Andreas Müller
11:30 PM feature request #9894 (Feedback): Make primary collector editable for field unit
... no, not yet ready. After entering a team and a primary collector for a field unit and then setting the focus to a... Andreas Müller
11:25 PM feature request #9894 (Closed): Make primary collector editable for field unit
Seems to work as expected. Andreas Müller
11:13 PM bug #9895 (Closed): Multiple representations of the same entity after move of synonym
Seems to work as expected. Andreas Müller
10:53 PM bug #9914 (Closed): Nomenclatural sources should have a space prefix if they do start with a letter
Andreas Müller
10:46 PM bug #9916 (Feedback): Tooltip for data cells in bulkeditor
I get
~~~
last remote request response header time : Thu, 20 Jan 2022 08:31:49 GMT
client error time : 2022-01-...
Andreas Müller
10:31 PM bug #9855: Specimen images sometimes show duplicates
Andreas Kohlbecker wrote in #note-7:
> For de-duplicating the Media in `TaxonService.listMedia()` I suggest to use a...
Andreas Müller
03:43 PM bug #9855: Specimen images sometimes show duplicates
For de-duplicating the Media in `TaxonService.listMedia()` I suggest to use a more modern java code style:
~~~
ta...
Andreas Kohlbecker
07:25 PM feature request #9877: Account Registration UI
20Jan 2022: invalid user name "wolf kusber" results in an error in Vaadin, the user is not generated, but the mail th... Wolf-Henning Kusber
07:20 PM feature request #9859: Password Recovery UI
Password recovery is fine if the saved Password is used. Wolf-Henning Kusber
04:03 PM bug #9854 (Closed): In ABCD import typedesignations should not be added to all names of a homotypic group
This is fixed. Katja Luther
04:03 PM bug #6121 (Worksforme): NPE during portal web service requests that go through BaseController.doGetMethod()
it is 5 years ago that we have created this ticket. I hardly remember potential conditions that are not documented here. Andreas Kohlbecker
03:59 PM bug #8343: potential timezone problem in application stack
Andreas Müller wrote in #note-7:
> Is this solved in the meanwhile? https://www.phycobank.org/cdm_dataportal/registr...
Andreas Kohlbecker
03:53 PM feature request #9896 (Closed): Add annotations of the complete derivation branch to DerivedUnitDTO and FieldUnitDTO as AnnotationDTO
Andreas Kohlbecker
03:52 PM bug #9878 (Closed): show MediaSpecimen media source citations in registration items
Andreas Kohlbecker
03:25 PM bug #9878: show MediaSpecimen media source citations in registration items
In Vaadin the issue is resolved. The ticket can be closed. Wolf-Henning Kusber
03:51 PM feature request #9884 (Closed): Vaadin UI-disabled reporting
As the remaining inconsistencies will be solved with #9860, this ticket here can be closed. Andreas Kohlbecker
03:32 PM bug #9913 (Closed): TypeDesignationEditor: Sub collections without code show blank in the collection select
the new issue is handled in #9920 and this ticket here can be closed Andreas Kohlbecker
03:29 PM bug #9920 (Closed): TypeDesignations appear mixed up in Registration Workingset Editor
Andreas Kohlbecker
03:14 PM bug #9920: TypeDesignations appear mixed up in Registration Workingset Editor
Both issues (mix, plural/singular) are fixed. The ticket can be closed. Wolf-Henning Kusber
03:28 PM feature request #804 (Closed): Integrationtest for TextData.getPreferredLanguageString()
test implemented Andreas Kohlbecker
03:28 PM feature request #804 (Resolved): Integrationtest for TextData.getPreferredLanguageString()
Applied in changeset commit:cdmlib|0af14c54443f3db34a80702506a6a18384b286fd. Andreas Kohlbecker
10:18 AM task #9922 (New): Do not save Image Server thumbnails indicating an not-existing image
Filter out "not exists" thumbnail image from BGBM image server during image save in cdmlib Andreas Müller

01/18/2022

11:09 PM task #9918: Import Caryophyllaceae
Unparsed names:
Silene nocteolens Webb & Berthel., Hist. Nat. Iles Canaries 3(2,1): 141. 1840 => OK
Andreas Müller
04:51 PM bug #9921 (Resolved): manage/Action.jsp broken
It seems as if something got broken due to the recently made code cleaning.
Clicking on stop in the management UI ...
Andreas Kohlbecker
04:41 PM feature request #9134 (Closed): Rule based creation of additional media representations "on the fly"
I think this can be closed now, the fix made comitted with commit:41ed639d also solves the problem that recently occu... Andreas Kohlbecker
12:39 PM bug #9920: TypeDesignations appear mixed up in Registration Workingset Editor
Wolf-Henning Kusber wrote in #note-6:
> TypeDesignations appear mixed up in Registration Workingset Editor is fixed....
Andreas Kohlbecker
10:49 AM bug #9920: TypeDesignations appear mixed up in Registration Workingset Editor
TypeDesignations appear mixed up in Registration Workingset Editor is fixed.
But the wording ...type vs. ...types ...
Wolf-Henning Kusber

01/17/2022

06:39 PM bug #9920: TypeDesignations appear mixed up in Registration Workingset Editor
fixed, please review once the test server is updated (tomorrow) Andreas Kohlbecker
06:38 PM bug #9920 (Resolved): TypeDesignations appear mixed up in Registration Workingset Editor
Applied in changeset commit:cdm-vaadin|a52dca4aceec75b445717c5d42deb045c8694abe. Andreas Kohlbecker
06:05 PM bug #9920 (Closed): TypeDesignations appear mixed up in Registration Workingset Editor
Example Registration http://phycobank.org/102736 in test system:
* Collections:
* "Coll. Reichardt" sub-coll...
Andreas Kohlbecker
04:43 PM bug #9917: etopo1 broken due to server migration at noaa.gov
... otherwise there might no longer be a need to support this map layer since we can use OpenTopoMap.
Andreas Kohlbecker

01/15/2022

07:43 PM task #9919 (Duplicate): Upgrade maven-compiler-plugin to 3.x in cdmlib
Andreas Müller
02:56 PM task #9919 (Duplicate): Upgrade maven-compiler-plugin to 3.x in cdmlib
Currently model test fail when doing so (maybe because aspectj is not handled correctly) Andreas Müller
12:59 AM task #9918 (In Progress): Import Caryophyllaceae
Andreas Müller
12:55 AM task #9918 (In Progress): Import Caryophyllaceae
Andreas Müller

01/14/2022

06:28 PM bug #9917 (In Progress): etopo1 broken due to server migration at noaa.gov
Andreas Müller
05:29 PM bug #9917: etopo1 broken due to server migration at noaa.gov
see mapproxy git repo branch `nooa-etopo1-fix` for a first attempt to fix this in mapproxy Andreas Kohlbecker
05:17 PM bug #9917 (In Progress): etopo1 broken due to server migration at noaa.gov
The map service at noaa has been moved to a new server and map are thus available from new service endpoints:
Docu...
Andreas Kohlbecker
04:22 PM bug #9916 (Resolved): Tooltip for data cells in bulkeditor
Please review. Katja Luther
04:21 PM bug #9916 (Feedback): Tooltip for data cells in bulkeditor
mail AM:
ich habe kürzlich beim Datacleaning festgestellt, dass bei den Bulk Editor NAT Tables beim Mouse Over das...
Katja Luther
03:43 PM feature request #9915 (New): Make "accessed" also available for references of type "database"
"Accessed" already exists for websites. Websites and databases are usually dynamic references and therefore maybe ci... Andreas Müller
10:09 AM bug #9236 (Closed): stopping an instance breaks the centralized logging
This works as expected. Katja Luther

01/13/2022

04:54 PM bug #9236: stopping an instance breaks the centralized logging
solved by excluding the LogbackServletContainerInitializer from the configuration.
Please review
Andreas Kohlbecker
04:53 PM bug #9236 (Resolved): stopping an instance breaks the centralized logging
Applied in changeset commit:cdm-server|7ba74c603e769569dd1b0052949cd321c86722da. Andreas Kohlbecker
12:05 PM bug #9236 (In Progress): stopping an instance breaks the centralized logging
Andreas Müller
11:29 AM bug #9236: stopping an instance breaks the centralized logging
The problem is caused by the `LoggerContext` being shutdown by the `LogbackServletContextListener` in `LogbackServlet... Andreas Kohlbecker

01/12/2022

03:56 PM bug #9914 (Resolved): Nomenclatural sources should have a space prefix if they do start with a letter
Andreas Müller
03:44 PM bug #9914 (Closed): Nomenclatural sources should have a space prefix if they do start with a letter
... and if they are not purely numeric Andreas Müller
03:21 PM bug #9913: TypeDesignationEditor: Sub collections without code show blank in the collection select
Collection select is fixed, fine.
But another critical error appeared:
the values of two different specimens ar...
Wolf-Henning Kusber

01/11/2022

12:45 PM bug #9913: TypeDesignationEditor: Sub collections without code show blank in the collection select
Problem solved, please review. Andreas Kohlbecker
12:45 PM bug #9913 (Resolved): TypeDesignationEditor: Sub collections without code show blank in the collection select
Applied in changeset commit:cdm-vaadin|48936d85bd57c3a6cbb45f2c9d0d47bc55380380. Andreas Kohlbecker
12:08 PM bug #9913 (Closed): TypeDesignationEditor: Sub collections without code show blank in the collection select
Andreas Kohlbecker

01/10/2022

01:25 PM bug #9912 (New): java.lang.ClassCastException: [Ljava.lang.String; cannot be cast to java.lang.String in TaxonGraphBeforeTransactionCompleteProcess L229
`TAXONNAME_NOMENCLATURALSOURCE` is an array, so below code line in `TaxonGraphBeforeTransactionCompleteProcess` fails... Andreas Kohlbecker

01/05/2022

03:39 PM bug #9911 (New): Expand area search to adjacent countries
Suggestion from David Merrick:
... Also you could have an "expand to adjacent countries" if the page knows for eac...
Andreas Müller
03:15 PM bug #9802: Label for min=max does not unify values in Matrix QuantitativeData label provider
Katja Luther wrote:
> > Also the label provider for the factual data view handles the issue correct. Is there a reas...
Andreas Müller
02:39 PM bug #9802: Label for min=max does not unify values in Matrix QuantitativeData label provider
> Also the label provider for the factual data view handles the issue correct. Is there a reason why we do not use th... Katja Luther
01:04 PM feature request #9894 (Resolved): Make primary collector editable for field unit
This is implemented with a selection dialog, maybe it would be easier to use with a drop down, filled with the team m... Katja Luther
12:27 PM feature request #9910 (New): Add configurable flag for common name search in dataportal simple search
Some portals may want to have a common name search flag included in simple search (similar to include misaplication f... Andreas Müller
10:16 AM task #9909 (New): Think about using the checker framework to avoid e.g. NPEs
https://checkerframework.org/manual/ Andreas Müller

01/04/2022

03:17 PM bug #9882 (Resolved): Null argument when deleting description in bulkeditor
Katja Luther wrote:
> The original problem is solved, but there is another issue. The deletion of the description el...
Katja Luther
02:47 PM bug #9895 (Resolved): Multiple representations of the same entity after move of synonym
This is fixed,please review. Katja Luther
01:49 PM bug #9907 (Resolved): NPE when trying to create polytomous key
This should be fixed. Katja Luther
01:44 PM bug #9907: NPE when trying to create polytomous key
This exception is caused by the missing treeIndex in nodeDto. Katja Luther
01:44 PM bug #9907 (Resolved): NPE when trying to create polytomous key
mail Murat Erdem Guzel:
We tried to "generate polytomous key" for our group. However, we got the following error m...
Katja Luther
01:48 PM bug #9900 (Resolved): Null values in agent search dialog
This should be fixed. Katja Luther
01:47 PM feature request #9908 (New): Add timeperiod to credits
for further explanation see #9906#note-1 Andreas Müller
09:52 AM feature request #9906: Implement credits in dataportal
ERS:
eine Frage zur Portal-Gestaltung: im Cichorieae-Portal gibt es auf einzelnen Taxon-Seiten die Kategorie “Cred...
Andreas Müller
09:49 AM feature request #9906 (New): Implement credits in dataportal
Credits are editable in TaxEditor but currently not yet visible in the CDM dataportals. However, in future they will ... Andreas Müller

01/03/2022

10:08 PM bug #9905 (In Progress): Parser is slow for names with authorteams
Andreas Müller
09:58 PM bug #9905 (In Progress): Parser is slow for names with authorteams
Probably the reason is that potential deduplication candidates are not found correctly and the list of candidates is ... Andreas Müller

12/23/2021

10:52 AM bug #9904 (Closed): NullPointerException (NPE) in ListView with filter name="Stephano"
fixed!
Now the validation errors are visible gain:
![](picture935-1.png)
Andreas Kohlbecker
10:51 AM bug #9904 (Resolved): NullPointerException (NPE) in ListView with filter name="Stephano"
Applied in changeset commit:cdmlib|00e4c79fbb7ae6fa6a5c911072ab1b6e0d8ccd7a. Andreas Kohlbecker
10:46 AM bug #9904: NullPointerException (NPE) in ListView with filter name="Stephano"
and is caused by a validation error ("Inconsistent type designations") in which case the `summaryText` in `Registrat... Andreas Kohlbecker
10:39 AM bug #9904: NullPointerException (NPE) in ListView with filter name="Stephano"
this happens for the registration http://phycobank.org/4680 Andreas Kohlbecker
10:34 AM bug #9904 (Closed): NullPointerException (NPE) in ListView with filter name="Stephano"

~~~
[phycobank] 10:31:11,561 DEBUG [qtp1161667116-25][eu.et.cd.va.pe.AccessRestrictedViewControlBean] - allowing...
Andreas Kohlbecker
 

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