EDIT

cleanup

revert unwanted last commit

ref #7930 remove IWithDoi from IAuthoredPublicationBase

ref #7929: clear the member list in group when deleting the group

initializing GatheringEvent.exactLocation to avoid LIE in UIs

ref #7760 Add collection code to citation

Return created feature node instead of feature tree

fixing LazyInitializationException

ref #7887 Return newly created DTO from service method

ref #7887 Set parent DTOs during initialization

ref #7887 Refactor TermDto usage

ref #7887 Remove getParent()

ref #7900 reverting : read-only transactions in DTO service with Propagation.REQUIRES_NEW

ref #7900 read-only transactions in DTO service with Propagation.REQUIRES_NEW

ref #7901 implement IPreferencePredicate in CdmPreference and service layer

ref #7887 Implement term service methods based on DTOs

ref #7829, ref #7800 improve nom. ref. matcher (also changes the result type => needs adaptation in client Apps)

revert: Add series parsing with letters (test) - all unwanted commits

Add series parsing with letters (test)

fix #7874 updating also the nomenclaturalTitle in updateTitleCacheForSingleEntity()

cleanup

ref #7283 fix NPE in AlternativeIdentifier constructor if no type is given

ref #7831 using uuids in findTaxonNameParts() methods as name exclude filter - NPE fix

ref #7831 using uuids in findTaxonNameParts() methods as name exclude filter

ref #7834 bugfix: returning empty page when no name matches

ref #7834 avoiding NPE in case of names which are not in the graph

fix #7834 findInTaxonGraph implemented for Registrations with RegistrationDTOController endpoint

ref #7831 adding name exlude filter to TaxonNamePartsFilter

Add tax editor preferences utilities

ref #7648 fixing bugs related to single taxa per graph and updating rels from lower ranks, with testcase

code cleaning

ref #7283: add service method to search for identifier and titleCache

ref #7589 Fix transactional annotations

ref #7589 Remove auto creation of default description

ref #7589 Move long running task to corresponding service

• this solves the deadlocks when opening the matrix editor

fix #7785 CdmUserHelper can use ICdmEntityUuidCacher to avoid loading entities from the db for permission checks:
- inner class CachingCdmUserHelper to be used when CdmUserHelper.withCache() is called
- ICdmEntityUuidCacher and CdmTransientEntityAndUuidCacher complements the CdmTransientEntityCacher by the ability to get CDM entities from the cache by the UUID

ref #7648 avoiding NPE during equality check in TaxonGraphBeforeTransactionCompleteProcess

ref #7648 adding links to the ticket as preliminary rudimentary documentation

ref #7709 fixing missing runAsAuthenticator for RunAsAdmin, TaxonGraphHibernateListener and test

removing useless annotation

ref #7709 JUnit testsuite to reproduce the test failure when running RegistrationIdentifierMinterTest and TaxonGraphHibernateListenerTest sequentially

cleanup

ref #7648 free configurable TaxonGraphHibernateListener ready

ref #7648 moving TaxonGraphHibernateListener and related classes into cdmlib-service

fixing usage of wrong logger in RunAsAuthenticator

Merge branch 'feature/#7648' into develop

• TaxonGraphDao
• TaxonGraphController
• TaxonGraphService
• TaxonGraphDTO
• TaxonGraphHibernateListener and processor
• tests

cleanup

ref #7791 TaxonGraphService and TaxonGraphController implemented

ref #7648 TaxonGraphService as dao and TaxonGraphObserver as TaxonGraphHibernateListener

ref #7648 TaxonGraphService complete with full set of tests

ref #7345: add dao and service methods to get UuidAndTitleCache marked with a special markerType

ref #7648 initial implementation of TaxonGraphService with tests and TaxonGraphObserver

fix #7795 untilis xml DataSets can optionally be created without "[NULL]" values

ref #7788 adding institutionTitleCache to RegistrationDTO

ref #7783 assuring registrations have an identifier when saved - adapting test

ref #7788 adding institution to RegistrationDTO

ref #7783 TaxonNamePart with uuid & assuring registrations have an identifier when saved

ref #7589 Fix initial loading of matrix

ref #7723 adding missing permission check to RegistrationServiceImpl to supress unpublished registrations

fix #7776 Add descriptive data set sources to specimen descriptions

ref #7674 Fix LIE

Merge branch 'develop' into taxonDecription

adding additional testcase for QueryFactory

Merge branch 'develop' into taxonDecription

cleanup

ref #7764 fix failing synonym search with classification or subtree filter

make authenticationManager lazy to avoid circals during start up

fix #5868 restoring freetext search with leading wildcard and with empty query string, also fixes bug introduced while solving #4223

ref #7760 Show name authors for type designations

ref #7745 fix failing pathFrom if subtree is null

cleanup

ref #7745 childNodesOf implemented

ref #7745 add subtree filter to missing methods (childNodesOf is still missing implementation)

ref #7759 additional TaxonNode webservice endpoint and solving logging problems

fix #7757 first freetext search test working for subtree filter

ref #7745 implement treeindex search in freetext search (untested)

cleanup

rename AbstractRelationshipEdge.relationshipType to be more generic

ref #7745 add subtree parameter to freetext search methods

ref #7745 add subtree filter to taxon search (not yet tested for subtree != null)

ref #7745 fix recursive call in deprecated method

ref #7745 implement subtree filter for ClassificationController.rankSpecificRootNotes and .childNodes

avoid NPE when creating CollectionDto

ref #7674 Adjust description tag depending on marker type

ref #7674 Move aggregation service method to data set service

ref #7674 Add service method for creating taxon description for data set

ref #7742 disposable CdmCachers

ref #7729 setting maxEntriesLocalHeap for the cdmDefaultCache and activating ehcache jmx management beans for the CdmTransientEntityCacher

Merge branch 'develop' into taxonDecription

code cleaning

add TypeDesignationComparator

fix TypeDesignationSetManagerTest by sorting typeDesignations

minor

fix TypeDesignationSetManager, use values of map of typeDesignations instead of map in mapAndSort

ref #7599: further improvement for specimenDtos

fix TypeDesignationSetManager

getTypeDesignations in TypeDesignationSetManager should return a collection

ref #7700: fide and parenthesis are separated separators in taggedText

ref #7700: use TypedesignationSetManager for creating TypeDesignationString for homotypic group in cdm light export

ref #7700: use TypedesignationSetManager for creating TypeDesignationString for homotypic group in cdm light export