EDIT

ref #7755: provide all data for specimen pages

first implementation for specimen page with DTOs

cleanup

use long instead of int (cont.)

use long instead of int in some of the count methods, use base methods for pageSize/number and order for criteria and queries, cleanup

cleanup

cleanup and remove rows(xxx) method

fix #7433: get specimen by genetic accession number

ref #6241 replaced @created by @since in cdmlib

ref #7095 Code clean up and refactoring

ref #7095 Retrieve only distinct SpecimenNodeWrapper objects

ref #7095 Enhance quicker service for taxon associated specimens

ref #7095 Implement quicker service for taxon associated specimens

ref #7095 Add dao method for listing UuidAndTitleCache object

ref #7095 Speed up specimen loading

ref #7324 Add new service method getFieldUnitsForGatheringEvent()

cleanup

fix delete of derivedUnits, derivationEvent needs to be deleted, add getUUIDAndTitleCache with pattern and limit

fix #6368 rename table and class TaxonNameBase

cleanup

ref #6190 removing svn property place holder in first line of code

Also return all specimens belonging to sub classes when specifying
SpecimenOrObservationBase as type

Upgrade to hibernate 5 with persistence tests running #4716

Add new service method listDerminationEvents to occurrence service which
lists all determination events that contain the given specimen

Check for names and synonymy when checking specimen determinations

Fix associated specimen retrieval for name determination

• added test

Extend service methods to retrieve specimens that are determiined as a
taxon name

When retrieving associated specimens retrieve all
IndividualsAssocations, TypeDesignation, Determinations

Return type designations with associated taxa

Fix return type

moving UuidAndTitleCache from model to persistence. #4799

added id to uuidAndTitleCache

• added significantIdentifer as search parameter to occurrenceService.findByTitle()

• added findOccurrences() and countOccurrences() to service layer
  • added configurator for these methods
  • optimized retrieval with HQL query
  • made use of service method in DerivateSearchView

• added service method to get descriptions which have a specimen set as describedSpecimen
  • added test which fails because the XML is loaded incorrectly

• changed service method to retrieve the directly related objects
  • adapted tests

• added DISTINCT to HQL query for associated taxa
  • created and used XML data source in occurrence service test

• added occurrence service methods to retrieve all taxa that are associated with a specimen:
  • via IndividualsAssociation
  • via TypeDesignation
  • added test

• added TODO comment

• removed unused code

• implemented service method (and test for it) to get all taxa associated with a single specimen

• added listAssociatedTaxa() method to occurrence service (non functional)

DistributionInfoForTaxon methods implemented in services and controllers

rename FieldObservation -> FieldUnit #3351

adding recordBasis to SpecimenOrObservationBase and removing some DerivedUnit classes (all #3378) and adding kindOfUnit to SpecimenOrObservationBase (except for according termType and vocabulary) #3568.

Hibernate 4 migration. All test running except for SDDImport (Out of memory)

renaming listByAllAssociations() to listByAssociatedTaxon()

add override and javadoc to OccrrenceDaoHibernateImpl

fixing #2329 (Synonym types not shown in specimen tab)

a comment to (fixing #2232)

fixing #2232

getting all SpecimenOrObservationBases for a Taxon

merging the last changes from SPRINT-Cichoriea1 into trunk

merging /branches/cdmlib/SPRINT-Chichorieae1/ to trunk

Refactored free text search to re-use the same code for all identifiable entities. Switched to StandardAnalyzer to include indexing of numbers. Removed redundant code from taxonDao.delete() method (as included entities deleted using hibernate's cascade method)

Refactored OrderHint and added RandomOrder, plus a couple of small bug fixes in VersionableDaoBase

Added free-text search methods to name & occurrence DAO's

Corrected and added to tests

Updated tests to reflect the new unique uuid constraint, corrected the CacheStrategyGenerator listener to correctly add updatedBy / createdBy metadata on saveOrUpdate events, corrected a couple of DAO methods, and added merge(T t) to ICdmEntityDao to allow the persisting of detached objects

Lots of changes, including,
adding List orderHints, List propertyPaths to dao methods
New MarkerDao & impl
Expanded test coverage of beanintialization and cache strategy generator configuration

Committing large number of changes relating to versioning implementation (#108)

added @Qualifier to help autowiring in cdmlib-remote

Added methods to IOccurenceDao as part of #466, created ICollectionDao and implementation, and ported getCollectionsByCode to it

Clean warnings in cdmlib-persistence

Implemented Occurrence Service. Marshalling / unmarshalling SpecimenOrObservationBase.