Activity
From 05/18/2022 to 06/16/2022
06/16/2022
- 09:50 PM bug #10075: Fix deserialization exception for bytebuddy base hibernate SerializableProxy
- Please review.
- 09:50 PM bug #10075: Fix deserialization exception for bytebuddy base hibernate SerializableProxy
- Fixed with a workaround by overriding the class net.sf.ehcache.util.PreferredLoaderObjectInputStream which does not c...
- 09:47 PM bug #10075 (Resolved): Fix deserialization exception for bytebuddy base hibernate SerializableProxy
- Applied in changeset commit:taxeditor|9ee1ca440a5bbe003ed1c34e8abcc9f76ec97533.
- 04:50 PM bug #10075: Fix deserialization exception for bytebuddy base hibernate SerializableProxy
- it happens in readObject0.readOrdinaryObject.readSerialData.defaultReadFields.readObject0.(TCArray)checkResolve(readA...
- 02:51 PM bug #10075 (Closed): Fix deserialization exception for bytebuddy base hibernate SerializableProxy
- ... this is related to hibernate upgrade to v5.4 (#10067)
This happens when deserializing a org.hibernate.proxy.po... - 08:34 PM task #10077 (New): upgrade ehcache to 3.x
- Probably blocked by Spring upgrade to 5.x (#10216).
There is probably a duplicate #9207 which points out size, gro... - 04:40 PM bug #10076: Exception when opening character matrix with classification as root node
- This problem appears when the root node of the descriptive dataset is a classification, which has no parent node and ...
- 04:39 PM bug #10076 (Closed): Exception when opening character matrix with classification as root node
- mail Konstantina Koutroumpa:
Dear Katja and Andreas,
I am getting an error when opening the character matrix in... - 11:20 AM bug #8343: potential timezone problem in application stack
- Locally I added the timezone to the out put and for http://phycobank.org/100158 the timezone was CEST and for http:/...
- 09:14 AM bug #8343: potential timezone problem in application stack
- Andreas Müller wrote in #note-9:
> Andreas Kohlbecker wrote in #note-8:
> > Andreas Müller wrote in #note-7:
> > > Is... - 08:36 AM feature request #10074 (New): Areas for common names should be a set
- mail ERS:
Hallo,
bei der Eingabe von Common Names ist mir gerade aufgefallen, dass es die Möglichkeit geben sol...
06/13/2022
- 10:46 AM bug #7635: ObjectNotFoundException during delete of synonym and name
- Maybe this is a similar problem:
Hallo,
Caryophyllales_spp
Habe bei Sebsebia orthacantha, Synonym Kyphocarpa ort...
06/10/2022
- 02:55 PM task #10073 (New): Remove all docbkx related code/files from cdmlib
- ... and maybe others. They can be found at {parent}\src\docbkx\ and in parent-pom.
Probably also the changes folde...
06/09/2022
- 12:40 PM task #10072 (Closed): Upgrade fully to log4j2
- We already upgraded to log4j2 in #9359.
~~However, the class eu.etaxonomy.cdm.opt.config.LoggingConfigurer is not ...
06/08/2022
- 10:57 AM bug #10071: TaxonNodeDtos should be created directly not from taxon objects
- There were some follow up fixes, because the taxonnode dto created with SortableTaxonNodeQueryResult was not complete...
06/07/2022
- 01:19 PM bug #10033 (In Progress): For new FeatureTree only uuid is shown in dataportal
- 01:19 PM bug #10033 (Resolved): For new FeatureTree only uuid is shown in dataportal
- We need to adapt the taxeditor implementation, so that not the titlecache but the representation is used.
- 12:36 PM bug #10033: For new FeatureTree only uuid is shown in dataportal
- Terms contain an termrepresentation object, this is empty for terms/termcollections created in taxeditor. As a first ...
06/02/2022
- 02:33 PM bug #10034 (Resolved): Flat feature tree throws exception
- Now moving unsaved nodes is handled correctly. Please reviw.
- 09:41 AM bug #10071 (In Progress): TaxonNodeDtos should be created directly not from taxon objects
- This is done for the search of the taxonnodes for a specific taxon and also for the search in a subtree.
- 08:50 AM bug #10071 (Closed): TaxonNodeDtos should be created directly not from taxon objects
- The webservice getting the taxonnodeDtos for a taxon, first gets the taxon object and then creates the Dtos for the t...
06/01/2022
- 01:58 AM bug #10034 (In Progress): Flat feature tree throws exception
- Andreas Müller wrote in #note-2:
> The problem does only seem to appear if you try to move a node before you save. I... - 12:00 AM task #10009 (In Progress): Cleanup dependencies in TaxEditor
05/31/2022
- 02:43 PM bug #10034: Flat feature tree throws exception
- Could not reproduce this problem with the actual nightly build.
Steps I tried to reproduce the problem:
* creat... - 01:12 PM feature request #10070 (New): Upgrade to hibernate 6+
- Before start upgrade to hibernate 5.6.x if not yet done. There is still a problem with the TaxonGraphHibernateListene...
- 12:44 PM bug #10056 (Resolved): Make Reference.Accessed deletable in TaxEditor
- Added a delete button, please review.
- 11:57 AM bug #10059: Link for stored under and identification on specimen page does not work correctly
- please review.
- 11:57 AM bug #10059: Link for stored under and identification on specimen page does not work correctly
- The path to the name needs to be processed by url(), then the correct link is used.
- 11:56 AM bug #10059 (Resolved): Link for stored under and identification on specimen page does not work correctly
- Applied in changeset commit:cdm-dataportal|c90f5440175074c6a350ad24fdaba0c0b6b9ae74.
- 10:22 AM bug #10059: Link for stored under and identification on specimen page does not work correctly
- This problem occurs because there is an element data-cdm-render-path containing the actual render path and this is us...
- 08:28 AM task #10067 (In Progress): Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
- 08:16 AM feature request #10069 (In Progress): Upgrade hibernate search and lucene to hs6+ and lucene 8+
- Lucene 6+ seems to require hs6+ as there is a strange dependency on org.apache.lucene.document.Field.Index and ...Fie...
05/30/2022
- 10:59 PM bug #5477 (Resolved): lucene index not updated in all cases after Taxon.addMisappliedName
- Was not fully fixed yet. Problem reoccurred after upgrading to hibernate-search 5.7.3. "ContainedIn" was still missin...
- 10:47 PM bug #7487 (Resolved): Full text misapplied name search with area filter uses fixed relation type uuid
- Solved by adding also proparte and partial MAN and partial synonym relationship type subqueries. Also related to fina...
- 11:54 AM bug #10068 (Closed): Changing focus to accepted taxon does not work
- After opening a the name editor with focus on a synonym, the change of focus to the accepted taxon does not work, res...
- 11:27 AM bug #10060: Exception when adding kind-of-unit information to a field unit
- Katja Luther wrote in #note-1:
> I think we should not allow to set a kind of unit for a field unit, so I would remo... - 09:18 AM bug #10060 (In Progress): Exception when adding kind-of-unit information to a field unit
- I think we should not allow to set a kind of unit for a field unit, so I would remove the possibility to edit the kin...
05/25/2022
- 10:49 AM task #3722 (Resolved): Using @OrderColumn does not work in trees
- Probably solved, still needs intensive testing and code cleanup.
- 10:29 AM feature request #7861 (In Progress): TaxonGraphHibernateListener: inject the ITaxonGraphDao into TaxonGraphBeforeTransactionCompleteProcess
- A somehow similar solution was implemented in 8c6b6172722d to adapt the TaxonGraphBeforeTransactionCompleteProcess to...
- 10:23 AM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
- Andreas Kohlbecker wrote in #note-10:
> "Session is closed!"-problem is solved now.
This fix was only a workaroun...
05/23/2022
- 03:56 PM task #3722 (In Progress): Using @OrderColumn does not work in trees
- 10:57 AM task #3722: Using @OrderColumn does not work in trees
- sortIndex needs to be handled newly in hibernate5.2 so we can try to handle this ticket, too.
- 03:55 PM task #8127 (In Progress): [Reminder] to check if Hibernate Null Value bug still exists
- 03:55 PM task #8127: [Reminder] to check if Hibernate Null Value bug still exists
- HHH_9751_Util is closed in the meanwhile (https://hibernate.atlassian.net/browse/HHH-9751) and we probably can remove...
- 01:04 PM bug #10012 (Closed): Fix failing SpecimensTreeViewTest for dataportals after debian11 migration
- Tests are ok again, so we can close this ticket.
- 10:03 AM bug #10012: Fix failing SpecimensTreeViewTest for dataportals after debian11 migration
- php5 needed to be disabled and php7.4 enabled. This is done and pages with jstor image viewer as url are displayed co...
- 10:34 AM task #10067: Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
- mvn clean install –fail-never (or just –fn)
https://maven.apache.org/surefire/maven-surefire-plugin/examples/single-...
05/20/2022
- 06:03 PM task #10067 (Closed): Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5
- https://stackoverflow.com/questions/50207195/how-to-upgrade-hibernate-from-version-4-3-to-5-2-for-migration-to-jdk-10...
- 02:50 PM task #10064 (Resolved): Upgrade cybertaxonomy.org to Drupal9
- cybertaxonomy.org is updated to 9.3 and using core-recommended (see https://github.com/drupal/core-recommended), the ...
05/18/2022
- 11:05 AM feature request #10066 (New): Secundum reference should be clickable
- The secundum reference should be clickable to open the details of the reference.
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