feature request #5647
closedAggregate misapplied names with multiple sensu references
100%
Description
Sometimes we do have multiple sensu references for a misapplied name as multiple sources use the name in the wrong way.
This kind of messes up the synonymy if we repeat the name for each sensu.
Instead we could check if misapplied names in the synonymy are exactly equal except for the sensu and instead create a sensu reference like sensu A, B, C & D.
An example is Ossaea glomerata which is a misapplied name for Miconia cubacinerea Judd & Majure in Cuba Checklist: http://portal.cybertaxonomy.org/flora-cuba/cdm_dataportal/taxon/6bbb3f75-ac3c-40f8-b91d-01069d5173c9 (we do now have 2 misapplied names, one for sec A&S which has an author, and for Flora de Cuba which has no author)
Note: Deduplication is already implemented somehow, currently sensu information is as annotation
Related issues
Updated by Andreas Müller about 8 years ago
Hi Andreas,
hier ein Beispiel für die dopptele sensu Anzeige:
AM
====
Ah jetzt weiß ich warum das so ist.
Misapplied names mit dem selben namen werden de-dupliziert. Daher wurde beschlossen, dass die sec referenz immer nur als footnote angehängt wird.
Durch die neue generische Möglichkeit die sec referenz in allen Teilen des Portals anzeigen zu können, kommt die sec referenz bei den missapplied names wieder zum Vorschein.
a.
Updated by Andreas Kohlbecker about 8 years ago
- Status changed from New to Resolved
- Assignee changed from Andreas Kohlbecker to Andreas Müller
Updated by Andreas Müller about 8 years ago
- Assignee changed from Andreas Müller to Andreas Kohlbecker
Deduplication already works except for references with missing author, but this is handled in a separate ticket #5676.
Another minor issue is to remove the duplicate "sensu"s. Due to the existing reference footnotes it is clearly distinguable where a new reference starts so we need sensu only once at the beginning but not before the second, third, ... misapplied name authorship. Semicolon separator is ok.
Check the above example to review if the missing authorship issue is solved here too once #5676 is solved
Updated by Andreas Kohlbecker almost 8 years ago
- Assignee changed from Andreas Kohlbecker to Andreas Müller
fixed: 6bb442f r27811 avoiding duplicate sensu at missapplications
Updated by Andreas Müller almost 8 years ago
- Target version changed from Unassigned CDM tickets to Release 4.0
Updated by Andreas Müller almost 8 years ago
- Assignee changed from Andreas Müller to Andreas Kohlbecker
Replying to a.mueller:
Hi Andreas,
hier ein Beispiel für die dopptele sensu Anzeige: ...
Sorry the given link was incorrect. It should be http://portal.cybertaxonomy.org/flora-cuba/cdm_dataportal/taxon/1932a974-6139-4dae-98a4-98bb4e8362e4/synonymy?highlite=817c62e5-200d-4c71-b113-5a97db1da21b&acceptedFor=817c62e5-200d-4c71-b113-5a97db1da21b#817c62e5-200d-4c71-b113-5a97db1da21b
Unfortunately this shows that this ticket together with #5676 is not yet fixed correctly:
A red error box shows up saying: cdm_compose_url(): missing pathParameter 0 for reference/$0/authorship
"Zanthoxylum aromaticum" auct. shows the additional author sensu DC.1 but should not have an author at all
A footnote appears that only shows "1. sensu" which does not make sense
Updated by Andreas Müller almost 8 years ago
Also on http://portal.cybertaxonomy.org/flora-cuba/cdm_dataportal/taxon/6bbb3f75-ac3c-40f8-b91d-01069d5173c9 the second MA secundum does not show up at all anymore. It is "Ossaea glomerata" sensu A&S1 now but should be "Ossaea glomerata" sensu A&S1, Flora de Cuba
Maybe this is an issue also handled by #5676 as Flora de Cuba has no author. Anyway it should appear at least in the footnotes.
Updated by Andreas Kohlbecker almost 8 years ago
- Status changed from Resolved to Closed
- Resolution set to fixed
- % Done set to 100
That this is definitely fixed can only now be seen after the installation problems with flora-cuba portal are fixed
Updated by Andreas Müller almost 8 years ago
There is an other ticket for displaying references correctly if they have no author (currently it only shows an empty string)
Updated by Andreas Kohlbecker over 7 years ago
- Related to bug #5676: Sensu does not show up if no author exists for secundum reference added
Updated by Andreas Kohlbecker over 5 years ago
- Description updated (diff)
- Private changed from Yes to No
Updated by Andreas Müller over 5 years ago
- Related to bug #5491: Implement name phrase correctly for misapplied names added
Updated by Andreas Müller over 5 years ago
- Related to bug #5492: Doubtful synonyms and misapplied names to be displayed correctly added
Updated by Andreas Müller over 5 years ago
- Related to feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)" added
Updated by Andreas Müller over 5 years ago
- Related to feature request #7658: use new taxon relationship DTO webservice in portal added