taxeditor.git
7 years agoUpdate testdata in TaxEditor to model changes
Andreas Müller [Mon, 14 Nov 2016 09:56:01 +0000 (10:56 +0100)]
Update testdata in TaxEditor to model changes

7 years agoUpdate TaxEditor tests to model changes
Andreas Müller [Mon, 14 Nov 2016 09:19:42 +0000 (10:19 +0100)]
Update TaxEditor tests to model changes

7 years agoExportSingleReadAlignmentWizardPage now allows to select output file and
Ben Stöver [Sun, 13 Nov 2016 17:24:38 +0000 (18:24 +0100)]
ExportSingleReadAlignmentWizardPage now allows to select output file and
format.

7 years agoref #5974 Some synonymRelationship updates in TaxEditor tests
Andreas Müller [Fri, 11 Nov 2016 13:18:43 +0000 (14:18 +0100)]
ref #5974 Some synonymRelationship updates in TaxEditor tests

7 years agoref #5974 Some synonymRelationship updates
Andreas Müller [Fri, 11 Nov 2016 13:07:32 +0000 (14:07 +0100)]
ref #5974 Some synonymRelationship updates

7 years agoref #5974 Some synonymRelationship updates and update for dataset.dtd in TaxEditor
Andreas Müller [Fri, 11 Nov 2016 12:58:20 +0000 (13:58 +0100)]
ref #5974 Some synonymRelationship updates and update for dataset.dtd in TaxEditor

7 years agoRevert "update model for cdm cache in TaxEditor" classpath changes
Andreas Müller [Fri, 11 Nov 2016 12:43:59 +0000 (13:43 +0100)]
Revert "update model for cdm cache in TaxEditor" classpath changes

This partly reverts commit cfb2c8db2bd6905fd8b5805915556b87af14984f.

7 years agoupdate model for cdm cache in TaxEditor
Andreas Müller [Fri, 11 Nov 2016 12:41:15 +0000 (13:41 +0100)]
update model for cdm cache in TaxEditor

7 years agoupdate TaxEditor H2 test database to new model
Andreas Müller [Fri, 11 Nov 2016 12:14:54 +0000 (13:14 +0100)]
update TaxEditor H2 test database to new model

7 years agoref #3925 remove unplaced and excluded from taxon view
Andreas Müller [Fri, 11 Nov 2016 09:55:12 +0000 (10:55 +0100)]
ref #3925 remove unplaced and excluded from taxon view

7 years agofix #4461 fix ordering for Datasource View
Andreas Müller [Thu, 13 Oct 2016 13:34:41 +0000 (15:34 +0200)]
fix #4461 fix ordering for Datasource View

7 years agocleanup
Andreas Müller [Thu, 13 Oct 2016 13:32:02 +0000 (15:32 +0200)]
cleanup

7 years agoref #3658 remove nomenclatural code from datasources
Andreas Müller [Thu, 13 Oct 2016 13:31:44 +0000 (15:31 +0200)]
ref #3658 remove nomenclatural code from datasources

7 years agocleanup
Andreas Müller [Thu, 13 Oct 2016 12:26:44 +0000 (14:26 +0200)]
cleanup

7 years agoref #3658 remove nomenclatural code from datasources
Andreas Müller [Thu, 13 Oct 2016 12:26:33 +0000 (14:26 +0200)]
ref #3658 remove nomenclatural code from datasources

7 years agoref #5974 Remove synonym relationships (rename synRelType to synRel and others)
Andreas Müller [Thu, 13 Oct 2016 12:09:23 +0000 (14:09 +0200)]
ref #5974 Remove synonym relationships (rename synRelType to synRel and others)

7 years agoref #3658 remove nomenclatural code from datasources
Andreas Müller [Thu, 13 Oct 2016 11:59:47 +0000 (13:59 +0200)]
ref #3658 remove nomenclatural code from datasources

7 years agoref #5974 Remove synonym relationships (compiling)
Andreas Müller [Thu, 13 Oct 2016 11:34:02 +0000 (13:34 +0200)]
ref #5974 Remove synonym relationships (compiling)

7 years agoi18n for AuthenticationUserBar
Patrick Plitzner [Wed, 9 Nov 2016 15:08:36 +0000 (16:08 +0100)]
i18n for AuthenticationUserBar

7 years agosmaller changes to display taxon interactions
Katja Luther [Tue, 8 Nov 2016 09:03:57 +0000 (10:03 +0100)]
smaller changes to display taxon interactions

7 years agoref #6176: the referencingObjectsCount is only called for wizards not in details...
Katja Luther [Fri, 4 Nov 2016 16:04:53 +0000 (17:04 +0100)]
ref #6176: the referencingObjectsCount is only called for wizards not in details view

7 years agoref #4867 Implement "Clone Classification" functionality
Patrick Plitzner [Sun, 6 Nov 2016 13:21:10 +0000 (14:21 +0100)]
ref #4867 Implement "Clone Classification" functionality

 - availabel via context menu in taxon navigator
 - parameters available: classification name, taxon relation from cloned
taxa to original taxa
 - sec reference

7 years agothe pattern for new created nomenclatural references with nomenclatural title is...
Katja Luther [Thu, 3 Nov 2016 13:41:02 +0000 (14:41 +0100)]
the pattern for new created nomenclatural references with nomenclatural title is the nomenclatural title not titlecache

7 years agofix #6175: transient objects are not marked as deleted in bulk editor only removed...
Katja Luther [Thu, 3 Nov 2016 13:19:39 +0000 (14:19 +0100)]
fix #6175: transient objects are not marked as deleted in bulk editor only removed from model

7 years agoadd a new DeleteMediaConfiguratorComposite
Katja Luther [Thu, 3 Nov 2016 08:52:00 +0000 (09:52 +0100)]
add a new DeleteMediaConfiguratorComposite

7 years agofix the deletion of media in bulk editor
Katja Luther [Thu, 3 Nov 2016 08:40:49 +0000 (09:40 +0100)]
fix the deletion of media in bulk editor

7 years agofix #6176: check if entity is new
Katja Luther [Thu, 3 Nov 2016 08:37:56 +0000 (09:37 +0100)]
fix #6176: check if entity is new

7 years agofix #5800: remove taxonomically included from menu
Katja Luther [Tue, 1 Nov 2016 12:31:04 +0000 (13:31 +0100)]
fix #5800: remove taxonomically included from menu

7 years agoref #5971: don't allow to edit local nomenclatural code if allowOverride is false
Katja Luther [Tue, 1 Nov 2016 12:03:05 +0000 (13:03 +0100)]
ref  #5971: don't allow to edit local nomenclatural code if allowOverride is false

7 years agoref #5971: minor
Katja Luther [Tue, 1 Nov 2016 11:41:18 +0000 (12:41 +0100)]
ref #5971: minor

7 years agoref #5971: add an admin page to the prefs and add cdm pref nomenclatural code
Katja Luther [Tue, 1 Nov 2016 11:16:51 +0000 (12:16 +0100)]
ref #5971: add an admin page to the prefs and add cdm pref nomenclatural code

7 years agofix #5660: rename Name Relationship to Name Relationships
Katja Luther [Tue, 1 Nov 2016 09:01:36 +0000 (10:01 +0100)]
fix #5660: rename Name Relationship to Name Relationships

7 years agominor
Katja Luther [Fri, 28 Oct 2016 07:30:15 +0000 (09:30 +0200)]
minor

7 years agoCDMSequenceMatrixAdapter now exports sequence metadata.
b.stoever [Thu, 27 Oct 2016 17:31:58 +0000 (19:31 +0200)]
CDMSequenceMatrixAdapter now exports sequence metadata.

7 years agoBug fix: CDMSequenceMatrixAdapter now does not create CharacterSetIntervalEvents...
b.stoever [Thu, 27 Oct 2016 13:55:07 +0000 (15:55 +0200)]
Bug fix: CDMSequenceMatrixAdapter now does not create CharacterSetIntervalEvents if the alignment has no columns.

7 years agoAdd key listener to remote login dialog
Patrick Plitzner [Tue, 25 Oct 2016 06:47:12 +0000 (08:47 +0200)]
Add key listener to remote login dialog

 - pressing enter in the password field or selecting the connect button
with the keyboard only will now also connect

7 years agoMerge branch 'LibrAlign' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into LibrAlign
b.stoever [Wed, 26 Oct 2016 15:31:46 +0000 (17:31 +0200)]
Merge branch 'LibrAlign' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into LibrAlign

7 years agoMerge branch 'LibrAlign' of https://dev.e-taxonomy.eu/git/taxeditor into LibrAlign
b.stoever [Wed, 26 Oct 2016 15:31:21 +0000 (17:31 +0200)]
Merge branch 'LibrAlign' of https://dev.e-taxonomy.eu/git/taxeditor into LibrAlign

# Conflicts:
# eu.etaxonomy.taxeditor.molecular.lib/.classpath
# eu.etaxonomy.taxeditor/rcp.target

7 years agochange herbarium to collection
Katja Luther [Wed, 26 Oct 2016 13:53:23 +0000 (15:53 +0200)]
change herbarium to collection

7 years agoMerge branch 'develop' into LibrAlign
Patrick Plitzner [Wed, 26 Oct 2016 08:05:03 +0000 (10:05 +0200)]
Merge branch 'develop' into LibrAlign

7 years agoAdd spring oauth2 dependency
Patrick Plitzner [Wed, 26 Oct 2016 08:04:40 +0000 (10:04 +0200)]
Add spring oauth2 dependency

7 years agoref #6163: in occurence bulk editor it is possible to add media
Katja Luther [Tue, 25 Oct 2016 08:42:54 +0000 (10:42 +0200)]
ref #6163: in occurence bulk editor it is possible to add media

7 years agoref #5972: the wizard warns the user if the reference is used ssomewhere else
Katja Luther [Mon, 24 Oct 2016 12:09:08 +0000 (14:09 +0200)]
ref #5972: the wizard warns the user if the reference is used ssomewhere else

7 years agofix #3573 Add non-generic configurator page to ABCD import wizard
Patrick Plitzner [Mon, 24 Oct 2016 11:47:41 +0000 (13:47 +0200)]
fix #3573 Add non-generic configurator page to ABCD import wizard

7 years ago#ref #5496 Do not show any terms for preservation method and stage
Patrick Plitzner [Mon, 24 Oct 2016 11:36:34 +0000 (13:36 +0200)]
#ref #5496 Do not show any terms for preservation method and stage
preferences

7 years agoref #6159: minor
Katja Luther [Mon, 24 Oct 2016 11:04:42 +0000 (13:04 +0200)]
ref  #6159: minor

7 years agoref #6159: fix that some column show no data
Katja Luther [Mon, 24 Oct 2016 09:17:00 +0000 (11:17 +0200)]
ref #6159: fix that some column show no data

7 years agoFix potential NPE
Patrick Plitzner [Mon, 24 Oct 2016 10:35:39 +0000 (12:35 +0200)]
Fix potential NPE

7 years agoMerge branch 'develop' into LibrAlign
Patrick Plitzner [Mon, 24 Oct 2016 07:20:39 +0000 (09:20 +0200)]
Merge branch 'develop' into LibrAlign

# Conflicts:
# eu.etaxonomy.taxeditor.molecular.lib/.classpath

7 years agoPlugin molecular.lib refactored to use direct project dependencies. This should not...
b.stoever [Sat, 22 Oct 2016 12:36:59 +0000 (14:36 +0200)]
Plugin molecular.lib refactored to use direct project dependencies. This should not be merged into trunk, since this is only for development state. (Currently the trunk is anyway already using different Maven dependencies.)
Adjustments to recent changes in JPhyloIO.

7 years agoref #6058 store named area filters more individually
Patrick Plitzner [Thu, 20 Oct 2016 15:09:19 +0000 (17:09 +0200)]
ref #6058 store named area filters more individually

7 years agoRemoved p6spy from classpath
Patrick Plitzner [Thu, 20 Oct 2016 13:20:31 +0000 (15:20 +0200)]
Removed p6spy from classpath

7 years agominor changes for name details view configuration
Katja Luther [Thu, 20 Oct 2016 13:00:32 +0000 (15:00 +0200)]
minor changes for name details view configuration

7 years agoadd the nameDetails configuration
Katja Luther [Thu, 20 Oct 2016 12:26:18 +0000 (14:26 +0200)]
add the nameDetails configuration

7 years agominor
Katja Luther [Thu, 20 Oct 2016 12:13:31 +0000 (14:13 +0200)]
minor

7 years agofix #6050: add the possibility to configure which fields should be displayed in name...
Katja Luther [Thu, 20 Oct 2016 11:55:27 +0000 (13:55 +0200)]
fix #6050: add the possibility to configure which fields should be displayed in name details view

7 years agofix test
Katja Luther [Thu, 20 Oct 2016 10:56:11 +0000 (12:56 +0200)]
fix test

7 years agoref #6050: test git/redmine and add the pref keys for configurable details view
Katja Luther [Tue, 18 Oct 2016 09:13:47 +0000 (11:13 +0200)]
ref #6050: test git/redmine and add the pref keys for configurable details view

7 years agofix #6129: remove additional authorstring in selection dialog search field
Katja Luther [Mon, 17 Oct 2016 11:15:46 +0000 (13:15 +0200)]
fix #6129: remove additional authorstring in selection dialog search field

7 years agofix #5891: save null instead of empty string for text fields
Katja Luther [Mon, 17 Oct 2016 08:12:44 +0000 (10:12 +0200)]
fix #5891: save null instead of empty string for text fields

7 years agosmaller changes for specimen import and others
Katja Luther [Fri, 14 Oct 2016 10:05:22 +0000 (12:05 +0200)]
smaller changes for specimen import and others

7 years agominor changes in excel import wizard
Katja Luther [Fri, 14 Oct 2016 09:53:19 +0000 (11:53 +0200)]
minor changes in excel import wizard

7 years agominor
Katja Luther [Fri, 14 Oct 2016 09:44:27 +0000 (11:44 +0200)]
minor

7 years agodelete transient services
Katja Luther [Fri, 14 Oct 2016 09:39:44 +0000 (11:39 +0200)]
delete transient services

7 years agominor
Katja Luther [Thu, 13 Oct 2016 12:46:39 +0000 (14:46 +0200)]
minor

7 years agoremove experimental code
Katja Luther [Thu, 13 Oct 2016 12:28:56 +0000 (14:28 +0200)]
remove experimental code

7 years agominor
Katja Luther [Thu, 13 Oct 2016 11:15:53 +0000 (13:15 +0200)]
minor

7 years agofix #5692: adapt delete algorithm to annotatedLineEditor mechanisms
Katja Luther [Thu, 13 Oct 2016 11:14:26 +0000 (13:14 +0200)]
fix  #5692: adapt delete algorithm to annotatedLineEditor mechanisms

7 years agoremoving p6spy dependencies
Andreas Kohlbecker [Wed, 12 Oct 2016 13:11:43 +0000 (15:11 +0200)]
removing p6spy dependencies

7 years agominor
Andreas Müller [Wed, 12 Oct 2016 11:35:30 +0000 (13:35 +0200)]
minor

7 years agoremoving generated file
Andreas Kohlbecker [Tue, 11 Oct 2016 16:32:42 +0000 (18:32 +0200)]
removing generated file

7 years agoRevert "ref #6118 catching exception during checkConnection"
Andreas Kohlbecker [Tue, 11 Oct 2016 16:29:48 +0000 (18:29 +0200)]
Revert "ref #6118 catching exception during checkConnection"

This reverts commit bb7b4f601b49f1ba29f149405246f120b4c46a9a.

7 years agoref #6124 fixing Bundle-Version
Andreas Kohlbecker [Tue, 11 Oct 2016 16:13:29 +0000 (18:13 +0200)]
ref #6124 fixing Bundle-Version

7 years agoOOPS!
Andreas Kohlbecker [Tue, 11 Oct 2016 14:46:16 +0000 (16:46 +0200)]
OOPS!

7 years agofixing project version in pom.xml which was not updated after the relase
Andreas Kohlbecker [Tue, 11 Oct 2016 14:44:35 +0000 (16:44 +0200)]
fixing project version in pom.xml which was not updated after the relase

7 years agoref #6118 catching exception during checkConnection
Andreas Kohlbecker [Tue, 11 Oct 2016 14:18:55 +0000 (16:18 +0200)]
ref #6118 catching exception during checkConnection

7 years agofix #5888: add the element as argument to postExecute method s
Katja Luther [Fri, 7 Oct 2016 13:03:37 +0000 (15:03 +0200)]
fix #5888: add the element as argument to postExecute method s

7 years agofix transient services
Andreas Müller [Thu, 6 Oct 2016 14:44:40 +0000 (16:44 +0200)]
fix transient services

7 years agofix #6120 Cleanup uuidAndTitleCache methods
Andreas Müller [Thu, 6 Oct 2016 10:48:15 +0000 (12:48 +0200)]
fix #6120 Cleanup uuidAndTitleCache methods

7 years agominor
Katja Luther [Wed, 5 Oct 2016 12:57:51 +0000 (14:57 +0200)]
minor

7 years agoref #6047: add the adapted files
Katja Luther [Wed, 5 Oct 2016 12:55:05 +0000 (14:55 +0200)]
ref #6047: add the adapted files

7 years agofix #6047: add the possibility to the termComboElement that the idInVoc is used as...
Katja Luther [Wed, 5 Oct 2016 12:52:40 +0000 (14:52 +0200)]
fix #6047: add the possibility to the termComboElement that the idInVoc is used as label

7 years agoref #5969: add remark that the nomenclatural code preference is stored in db
Katja Luther [Tue, 4 Oct 2016 10:19:23 +0000 (12:19 +0200)]
ref #5969: add remark that the nomenclatural code preference is stored in db

7 years agoref #5969: check for db connection before ty to read the preferred nomenclatural...
Katja Luther [Tue, 4 Oct 2016 10:11:37 +0000 (12:11 +0200)]
ref #5969: check for db connection before ty to read the preferred nomenclatural code

7 years agoref #3573 Add streamlined ABCD import configurator page
Patrick Plitzner [Mon, 26 Sep 2016 06:52:57 +0000 (08:52 +0200)]
ref #3573 Add streamlined ABCD import configurator page

7 years agoFix label for term vocabularies in term editor
Patrick Plitzner [Mon, 26 Sep 2016 06:36:20 +0000 (08:36 +0200)]
Fix label for term vocabularies in term editor

7 years agoTrim code
Patrick Plitzner [Mon, 26 Sep 2016 04:32:13 +0000 (06:32 +0200)]
Trim code

7 years agoMerge branch 'release/4.3.0' into develop
jenkins [Fri, 23 Sep 2016 14:24:12 +0000 (16:24 +0200)]
Merge branch 'release/4.3.0' into develop

7 years agoMerge branch 'release/4.3.0' 4.3.0
jenkins [Fri, 23 Sep 2016 14:24:11 +0000 (16:24 +0200)]
Merge branch 'release/4.3.0'

7 years agoUpdated version in pom / project files to taxeditor version : 4.4.0-SNAPSHOT and...
jenkins [Fri, 23 Sep 2016 13:15:14 +0000 (15:15 +0200)]
Updated version in pom / project files to taxeditor version : 4.4.0-SNAPSHOT and cdmlib version : 4.4.0-SNAPSHOT

7 years agoUpdated version in pom / project files to taxeditor version : 4.3.0 and cdmlib versio...
jenkins [Fri, 23 Sep 2016 13:15:08 +0000 (15:15 +0200)]
Updated version in pom / project files to taxeditor version : 4.3.0 and cdmlib version : 4.3.0

7 years agofix transient services
Andreas Müller [Wed, 21 Sep 2016 19:26:18 +0000 (21:26 +0200)]
fix transient services

7 years agofix transient service
Andreas Müller [Wed, 21 Sep 2016 09:14:53 +0000 (11:14 +0200)]
fix transient service

7 years agoalso add null check in comparator of nomenclaturalReferenceSelectionDialog
Katja Luther [Wed, 21 Sep 2016 07:45:03 +0000 (09:45 +0200)]
also add null check in comparator of nomenclaturalReferenceSelectionDialog

7 years agofix #6061: add a null check for abbrevTitleCache and titleCache in comparator
Katja Luther [Wed, 21 Sep 2016 07:35:58 +0000 (09:35 +0200)]
fix #6061: add a null check for abbrevTitleCache and titleCache in comparator

7 years agoref #5616 Generalize evaluation of available CdmViewers
Patrick Plitzner [Tue, 20 Sep 2016 14:59:29 +0000 (16:59 +0200)]
ref #5616 Generalize evaluation of available CdmViewers

7 years agoCompare taxon editor input based on taxon instead of taxon node (Revert
Patrick Plitzner [Tue, 20 Sep 2016 13:14:26 +0000 (15:14 +0200)]
Compare taxon editor input based on taxon instead of taxon node (Revert
93c6e0a894d2e4b0c9df6c7c3feff2f20e0b9e38)

7 years agofix #6101: add a check for multilanguage preference
Katja Luther [Tue, 20 Sep 2016 12:46:43 +0000 (14:46 +0200)]
fix #6101: add a check for multilanguage preference

7 years agoref #5616 Fix class check for bulk editor porperty tester
Patrick Plitzner [Tue, 20 Sep 2016 11:44:28 +0000 (13:44 +0200)]
ref #5616 Fix class check for bulk editor porperty tester

 - handle UuidAndTitleClache

7 years agoref #6082 try to fix dependency issues in managed TaxEditor
Andreas Müller [Mon, 19 Sep 2016 19:50:47 +0000 (21:50 +0200)]
ref #6082 try to fix dependency issues in managed TaxEditor