Andreas Müller [Mon, 14 Nov 2016 09:56:01 +0000 (10:56 +0100)]
Update testdata in TaxEditor to model changes
Andreas Müller [Mon, 14 Nov 2016 09:19:42 +0000 (10:19 +0100)]
Update TaxEditor tests to model changes
Ben Stöver [Sun, 13 Nov 2016 17:24:38 +0000 (18:24 +0100)]
ExportSingleReadAlignmentWizardPage now allows to select output file and
format.
Andreas Müller [Fri, 11 Nov 2016 13:18:43 +0000 (14:18 +0100)]
ref #5974 Some synonymRelationship updates in TaxEditor tests
Andreas Müller [Fri, 11 Nov 2016 13:07:32 +0000 (14:07 +0100)]
ref #5974 Some synonymRelationship updates
Andreas Müller [Fri, 11 Nov 2016 12:58:20 +0000 (13:58 +0100)]
ref #5974 Some synonymRelationship updates and update for dataset.dtd in TaxEditor
Andreas Müller [Fri, 11 Nov 2016 12:43:59 +0000 (13:43 +0100)]
Revert "update model for cdm cache in TaxEditor" classpath changes
This partly reverts commit
cfb2c8db2bd6905fd8b5805915556b87af14984f.
Andreas Müller [Fri, 11 Nov 2016 12:41:15 +0000 (13:41 +0100)]
update model for cdm cache in TaxEditor
Andreas Müller [Fri, 11 Nov 2016 12:14:54 +0000 (13:14 +0100)]
update TaxEditor H2 test database to new model
Andreas Müller [Fri, 11 Nov 2016 09:55:12 +0000 (10:55 +0100)]
ref #3925 remove unplaced and excluded from taxon view
Andreas Müller [Thu, 13 Oct 2016 13:34:41 +0000 (15:34 +0200)]
fix #4461 fix ordering for Datasource View
Andreas Müller [Thu, 13 Oct 2016 13:32:02 +0000 (15:32 +0200)]
cleanup
Andreas Müller [Thu, 13 Oct 2016 13:31:44 +0000 (15:31 +0200)]
ref #3658 remove nomenclatural code from datasources
Andreas Müller [Thu, 13 Oct 2016 12:26:44 +0000 (14:26 +0200)]
cleanup
Andreas Müller [Thu, 13 Oct 2016 12:26:33 +0000 (14:26 +0200)]
ref #3658 remove nomenclatural code from datasources
Andreas Müller [Thu, 13 Oct 2016 12:09:23 +0000 (14:09 +0200)]
ref #5974 Remove synonym relationships (rename synRelType to synRel and others)
Andreas Müller [Thu, 13 Oct 2016 11:59:47 +0000 (13:59 +0200)]
ref #3658 remove nomenclatural code from datasources
Andreas Müller [Thu, 13 Oct 2016 11:34:02 +0000 (13:34 +0200)]
ref #5974 Remove synonym relationships (compiling)
Patrick Plitzner [Wed, 9 Nov 2016 15:08:36 +0000 (16:08 +0100)]
i18n for AuthenticationUserBar
Katja Luther [Tue, 8 Nov 2016 09:03:57 +0000 (10:03 +0100)]
smaller changes to display taxon interactions
Katja Luther [Fri, 4 Nov 2016 16:04:53 +0000 (17:04 +0100)]
ref #6176: the referencingObjectsCount is only called for wizards not in details view
Patrick Plitzner [Sun, 6 Nov 2016 13:21:10 +0000 (14:21 +0100)]
ref #4867 Implement "Clone Classification" functionality
- availabel via context menu in taxon navigator
- parameters available: classification name, taxon relation from cloned
taxa to original taxa
- sec reference
Katja Luther [Thu, 3 Nov 2016 13:41:02 +0000 (14:41 +0100)]
the pattern for new created nomenclatural references with nomenclatural title is the nomenclatural title not titlecache
Katja Luther [Thu, 3 Nov 2016 13:19:39 +0000 (14:19 +0100)]
fix #6175: transient objects are not marked as deleted in bulk editor only removed from model
Katja Luther [Thu, 3 Nov 2016 08:52:00 +0000 (09:52 +0100)]
add a new DeleteMediaConfiguratorComposite
Katja Luther [Thu, 3 Nov 2016 08:40:49 +0000 (09:40 +0100)]
fix the deletion of media in bulk editor
Katja Luther [Thu, 3 Nov 2016 08:37:56 +0000 (09:37 +0100)]
fix #6176: check if entity is new
Katja Luther [Tue, 1 Nov 2016 12:31:04 +0000 (13:31 +0100)]
fix #5800: remove taxonomically included from menu
Katja Luther [Tue, 1 Nov 2016 12:03:05 +0000 (13:03 +0100)]
ref #5971: don't allow to edit local nomenclatural code if allowOverride is false
Katja Luther [Tue, 1 Nov 2016 11:41:18 +0000 (12:41 +0100)]
ref #5971: minor
Katja Luther [Tue, 1 Nov 2016 11:16:51 +0000 (12:16 +0100)]
ref #5971: add an admin page to the prefs and add cdm pref nomenclatural code
Katja Luther [Tue, 1 Nov 2016 09:01:36 +0000 (10:01 +0100)]
fix #5660: rename Name Relationship to Name Relationships
Katja Luther [Fri, 28 Oct 2016 07:30:15 +0000 (09:30 +0200)]
minor
b.stoever [Thu, 27 Oct 2016 17:31:58 +0000 (19:31 +0200)]
CDMSequenceMatrixAdapter now exports sequence metadata.
b.stoever [Thu, 27 Oct 2016 13:55:07 +0000 (15:55 +0200)]
Bug fix: CDMSequenceMatrixAdapter now does not create CharacterSetIntervalEvents if the alignment has no columns.
Patrick Plitzner [Tue, 25 Oct 2016 06:47:12 +0000 (08:47 +0200)]
Add key listener to remote login dialog
- pressing enter in the password field or selecting the connect button
with the keyboard only will now also connect
b.stoever [Wed, 26 Oct 2016 15:31:46 +0000 (17:31 +0200)]
Merge branch 'LibrAlign' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into LibrAlign
b.stoever [Wed, 26 Oct 2016 15:31:21 +0000 (17:31 +0200)]
Merge branch 'LibrAlign' of https://dev.e-taxonomy.eu/git/taxeditor into LibrAlign
# Conflicts:
# eu.etaxonomy.taxeditor.molecular.lib/.classpath
# eu.etaxonomy.taxeditor/rcp.target
Katja Luther [Wed, 26 Oct 2016 13:53:23 +0000 (15:53 +0200)]
change herbarium to collection
Patrick Plitzner [Wed, 26 Oct 2016 08:05:03 +0000 (10:05 +0200)]
Merge branch 'develop' into LibrAlign
Patrick Plitzner [Wed, 26 Oct 2016 08:04:40 +0000 (10:04 +0200)]
Add spring oauth2 dependency
Katja Luther [Tue, 25 Oct 2016 08:42:54 +0000 (10:42 +0200)]
ref #6163: in occurence bulk editor it is possible to add media
Katja Luther [Mon, 24 Oct 2016 12:09:08 +0000 (14:09 +0200)]
ref #5972: the wizard warns the user if the reference is used ssomewhere else
Patrick Plitzner [Mon, 24 Oct 2016 11:47:41 +0000 (13:47 +0200)]
fix #3573 Add non-generic configurator page to ABCD import wizard
Patrick Plitzner [Mon, 24 Oct 2016 11:36:34 +0000 (13:36 +0200)]
#ref #5496 Do not show any terms for preservation method and stage
preferences
Katja Luther [Mon, 24 Oct 2016 11:04:42 +0000 (13:04 +0200)]
ref #6159: minor
Katja Luther [Mon, 24 Oct 2016 09:17:00 +0000 (11:17 +0200)]
ref #6159: fix that some column show no data
Patrick Plitzner [Mon, 24 Oct 2016 10:35:39 +0000 (12:35 +0200)]
Fix potential NPE
Patrick Plitzner [Mon, 24 Oct 2016 07:20:39 +0000 (09:20 +0200)]
Merge branch 'develop' into LibrAlign
# Conflicts:
# eu.etaxonomy.taxeditor.molecular.lib/.classpath
b.stoever [Sat, 22 Oct 2016 12:36:59 +0000 (14:36 +0200)]
Plugin molecular.lib refactored to use direct project dependencies. This should not be merged into trunk, since this is only for development state. (Currently the trunk is anyway already using different Maven dependencies.)
Adjustments to recent changes in JPhyloIO.
Patrick Plitzner [Thu, 20 Oct 2016 15:09:19 +0000 (17:09 +0200)]
ref #6058 store named area filters more individually
Patrick Plitzner [Thu, 20 Oct 2016 13:20:31 +0000 (15:20 +0200)]
Removed p6spy from classpath
Katja Luther [Thu, 20 Oct 2016 13:00:32 +0000 (15:00 +0200)]
minor changes for name details view configuration
Katja Luther [Thu, 20 Oct 2016 12:26:18 +0000 (14:26 +0200)]
add the nameDetails configuration
Katja Luther [Thu, 20 Oct 2016 12:13:31 +0000 (14:13 +0200)]
minor
Katja Luther [Thu, 20 Oct 2016 11:55:27 +0000 (13:55 +0200)]
fix #6050: add the possibility to configure which fields should be displayed in name details view
Katja Luther [Thu, 20 Oct 2016 10:56:11 +0000 (12:56 +0200)]
fix test
Katja Luther [Tue, 18 Oct 2016 09:13:47 +0000 (11:13 +0200)]
ref #6050: test git/redmine and add the pref keys for configurable details view
Katja Luther [Mon, 17 Oct 2016 11:15:46 +0000 (13:15 +0200)]
fix #6129: remove additional authorstring in selection dialog search field
Katja Luther [Mon, 17 Oct 2016 08:12:44 +0000 (10:12 +0200)]
fix #5891: save null instead of empty string for text fields
Katja Luther [Fri, 14 Oct 2016 10:05:22 +0000 (12:05 +0200)]
smaller changes for specimen import and others
Katja Luther [Fri, 14 Oct 2016 09:53:19 +0000 (11:53 +0200)]
minor changes in excel import wizard
Katja Luther [Fri, 14 Oct 2016 09:44:27 +0000 (11:44 +0200)]
minor
Katja Luther [Fri, 14 Oct 2016 09:39:44 +0000 (11:39 +0200)]
delete transient services
Katja Luther [Thu, 13 Oct 2016 12:46:39 +0000 (14:46 +0200)]
minor
Katja Luther [Thu, 13 Oct 2016 12:28:56 +0000 (14:28 +0200)]
remove experimental code
Katja Luther [Thu, 13 Oct 2016 11:15:53 +0000 (13:15 +0200)]
minor
Katja Luther [Thu, 13 Oct 2016 11:14:26 +0000 (13:14 +0200)]
fix #5692: adapt delete algorithm to annotatedLineEditor mechanisms
Andreas Kohlbecker [Wed, 12 Oct 2016 13:11:43 +0000 (15:11 +0200)]
removing p6spy dependencies
Andreas Müller [Wed, 12 Oct 2016 11:35:30 +0000 (13:35 +0200)]
minor
Andreas Kohlbecker [Tue, 11 Oct 2016 16:32:42 +0000 (18:32 +0200)]
removing generated file
Andreas Kohlbecker [Tue, 11 Oct 2016 16:29:48 +0000 (18:29 +0200)]
Revert "ref #6118 catching exception during checkConnection"
This reverts commit
bb7b4f601b49f1ba29f149405246f120b4c46a9a.
Andreas Kohlbecker [Tue, 11 Oct 2016 16:13:29 +0000 (18:13 +0200)]
ref #6124 fixing Bundle-Version
Andreas Kohlbecker [Tue, 11 Oct 2016 14:46:16 +0000 (16:46 +0200)]
OOPS!
Andreas Kohlbecker [Tue, 11 Oct 2016 14:44:35 +0000 (16:44 +0200)]
fixing project version in pom.xml which was not updated after the relase
Andreas Kohlbecker [Tue, 11 Oct 2016 14:18:55 +0000 (16:18 +0200)]
ref #6118 catching exception during checkConnection
Katja Luther [Fri, 7 Oct 2016 13:03:37 +0000 (15:03 +0200)]
fix #5888: add the element as argument to postExecute method s
Andreas Müller [Thu, 6 Oct 2016 14:44:40 +0000 (16:44 +0200)]
fix transient services
Andreas Müller [Thu, 6 Oct 2016 10:48:15 +0000 (12:48 +0200)]
fix #6120 Cleanup uuidAndTitleCache methods
Katja Luther [Wed, 5 Oct 2016 12:57:51 +0000 (14:57 +0200)]
minor
Katja Luther [Wed, 5 Oct 2016 12:55:05 +0000 (14:55 +0200)]
ref #6047: add the adapted files
Katja Luther [Wed, 5 Oct 2016 12:52:40 +0000 (14:52 +0200)]
fix #6047: add the possibility to the termComboElement that the idInVoc is used as label
Katja Luther [Tue, 4 Oct 2016 10:19:23 +0000 (12:19 +0200)]
ref #5969: add remark that the nomenclatural code preference is stored in db
Katja Luther [Tue, 4 Oct 2016 10:11:37 +0000 (12:11 +0200)]
ref #5969: check for db connection before ty to read the preferred nomenclatural code
Patrick Plitzner [Mon, 26 Sep 2016 06:52:57 +0000 (08:52 +0200)]
ref #3573 Add streamlined ABCD import configurator page
Patrick Plitzner [Mon, 26 Sep 2016 06:36:20 +0000 (08:36 +0200)]
Fix label for term vocabularies in term editor
Patrick Plitzner [Mon, 26 Sep 2016 04:32:13 +0000 (06:32 +0200)]
Trim code
jenkins [Fri, 23 Sep 2016 14:24:12 +0000 (16:24 +0200)]
Merge branch 'release/4.3.0' into develop
jenkins [Fri, 23 Sep 2016 14:24:11 +0000 (16:24 +0200)]
Merge branch 'release/4.3.0'
jenkins [Fri, 23 Sep 2016 13:15:14 +0000 (15:15 +0200)]
Updated version in pom / project files to taxeditor version : 4.4.0-SNAPSHOT and cdmlib version : 4.4.0-SNAPSHOT
jenkins [Fri, 23 Sep 2016 13:15:08 +0000 (15:15 +0200)]
Updated version in pom / project files to taxeditor version : 4.3.0 and cdmlib version : 4.3.0
Andreas Müller [Wed, 21 Sep 2016 19:26:18 +0000 (21:26 +0200)]
fix transient services
Andreas Müller [Wed, 21 Sep 2016 09:14:53 +0000 (11:14 +0200)]
fix transient service
Katja Luther [Wed, 21 Sep 2016 07:45:03 +0000 (09:45 +0200)]
also add null check in comparator of nomenclaturalReferenceSelectionDialog
Katja Luther [Wed, 21 Sep 2016 07:35:58 +0000 (09:35 +0200)]
fix #6061: add a null check for abbrevTitleCache and titleCache in comparator
Patrick Plitzner [Tue, 20 Sep 2016 14:59:29 +0000 (16:59 +0200)]
ref #5616 Generalize evaluation of available CdmViewers
Patrick Plitzner [Tue, 20 Sep 2016 13:14:26 +0000 (15:14 +0200)]
Compare taxon editor input based on taxon instead of taxon node (Revert
93c6e0a894d2e4b0c9df6c7c3feff2f20e0b9e38)
Katja Luther [Tue, 20 Sep 2016 12:46:43 +0000 (14:46 +0200)]
fix #6101: add a check for multilanguage preference
Patrick Plitzner [Tue, 20 Sep 2016 11:44:28 +0000 (13:44 +0200)]
ref #5616 Fix class check for bulk editor porperty tester
- handle UuidAndTitleClache
Andreas Müller [Mon, 19 Sep 2016 19:50:47 +0000 (21:50 +0200)]
ref #6082 try to fix dependency issues in managed TaxEditor