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From 08/29/2013 to 09/27/2013

09/27/2013

10:44 PM feature request #3764 (Resolved): Improve formatting for reference type Section
see #2853, see also #2862
Open issues:
* Separator between author (incl. year) and article/booksection if secti...
Andreas Müller
07:48 PM Revision a90bc33f (cdmlib): some bugfixes for the update script (merge r19034 into trunk)
Andreas Müller
07:39 PM Revision 560df098 (cdmlib): reordering and changing tests for OriginalSOurceType and make second non capital in MeasurementUnit.csv
Andreas Müller
07:38 PM Revision ebd0744c (cdmlib): minor
Andreas Müller
07:23 PM Revision 45287ef7 (cdmlib): Fix non capital meter #3760
Andreas Müller
07:10 PM Revision 7109757a (cdmlib): some bugfixes for the update script
Andreas Müller
06:05 PM feature request #3756 (New): Missing data and layout improvements for MediaSpecimen in data portal
There is a Media attribute in MediaSpecimen which needs to be shown.
#3614, #3597, #3751
====
For the /o...
Andreas Müller
04:19 PM task #3749 (In Progress): Check if all molecular data is shown correctly in data portal [also DISCUSS]
data available only for Alga Terra (needs new import) and maybe for campanula.
We may also want to use transient...
Andreas Müller
04:17 PM Revision dc435632 (cdm-dataportal): switching simple search back to old search and using new luncene bases search only for advances search
Andreas Kohlbecker
04:07 PM feature request #3312 (Closed): Add time period scope to DescriptionElementBase
Andreas Müller
04:07 PM feature request #3747 (Closed): Check if time period is handled correctly for description elements in data portals
~~also modifiers and modifyingText are not yet checked as not yet editable via TaxEditor~~ -->>> #8144
see #3312...
Andreas Müller
04:05 PM feature request #3746 (Closed): Implement time period scope for description elements in TaxEditor
~~also modifiers and modifyingText is still missing there. The later should be available only for NON-TextData.~~ =>... Andreas Müller
04:01 PM Revision ff20b28f (cdm-dataportal): #3744: Remove all usage of ICBN, replace by ICNAFP
Andreas Kohlbecker
03:34 PM feature request #3742 (Closed): Display altitude, distance to Ground and watersurface correctly in dataportal
see #2663, #3741, #3072, #3074,
Andreas Müller
03:34 PM Revision 7f6dcdcf (cdmlib): restoring old findTaxaAndNames controller methods
Andreas Kohlbecker
03:01 PM Revision fae36a2a (cdm-dataportal): renaming FeatureNode->children to childNodes [CDM 3.3]
Andreas Kohlbecker
02:45 PM Revision d1481c18 (taxeditor): - query parameters are read from wizard page
- enhanced query's toString() method Patrick Plitzner
02:45 PM Revision 6f8d5f80 (cdmlib): - query parameters are read from wizard page
- enhanced query's toString() method Patrick Plitzner
02:31 PM feature request #3740 (Closed): Allow recursively setting the publish bit for TaxonBase
implemented into ITaxonService (source:trunk/cdmlib/cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ITaxon... Andreas Müller
12:42 PM bug #3737 (Closed): Protected caches for taxa and names behave inconsistent
Some name protected caches do not really work as expected here. We need to test the protected cache behaviour by hand... Andreas Müller
11:56 AM Revision a14ee477 (taxeditor): - implementing transient service layer to use wit ABCD import to not save the data
Patrick Plitzner
11:26 AM Revision 11aff7aa (cdmlib): adding POST capabilities to rest service endpoint
Andreas Kohlbecker
11:26 AM Revision c7533f2e (cdmlib): furher improvement to the TitleAndNameCacheAutoInitializer
Andreas Kohlbecker
11:10 AM Revision c9a0cc81 (cdmlib): fix missing taxon.titleCache length ->800 in update script
Andreas Müller
12:24 AM Revision 4138a41e (cdmlib): there is a class now, to do mediawiki export.method exportFromFile does not work proper. images have to be imported
Sybille Bürs
12:20 AM Revision b9a19ae2 (cdmlib): there is a class now, to do mediawiki export.method exportFromFile does not work proper. images have to be imported
Sybille Bürs

09/26/2013

07:51 PM feature request #2975 (New): Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
Andreas Müller
06:58 PM bug #3658: Update Nomenclatural code for datasources
preliminary bugfix in CdmPersistentDataSource: r19021
Andreas Müller
06:38 PM Revision 7abcdc53 (cdmlib): minor updates to updater
Andreas Müller
06:37 PM Revision 1ad5532c (cdmlib): preliminary fix for ICBN bug #3658
Andreas Müller
06:24 PM Revision 7cf7cd5f (cdmlib): some bugfixes for update script
Andreas Müller
05:45 PM Revision 6c2ad6ce (cdmlib): improving the TitleCacheAutoInitializer and turning it into a TitleAndNameCacheAutoInitializer
Andreas Kohlbecker
05:45 PM Revision b9cbcc7c (cdmlib): moving all beaninitializer classes to new package 'eu.etaxonomy.cdm.persistence.dao.initializer'
Andreas Kohlbecker
03:55 PM Revision 544878ef (taxeditor): - DataImportSpecimenEditorInput now call cdmlib-ext to query BioCASE provider and calls cmlib-io to use ABCD-import for converting ABCD into SpecimenOrObservationBase objects
- implemented TransientCdmRepository an TransientOccurenceService for that Patrick Plitzner
03:00 PM Revision 59d9c17d (cdm-server): switching project version to 3.3.0-SNAPSHOT
Andreas Kohlbecker
02:50 PM Revision 7d436597 (cdmlib): refactoring MatchMode class
Andreas Kohlbecker
02:50 PM Revision 4881279a (cdmlib): todo comment regarding #2432 ([E+M][Portal] Implement search for multiple areas)
Andreas Kohlbecker
02:50 PM Revision 2a76bd4e (cdmlib): using the recomendet requestPathAndQuery() for logging HTTP requests in controllers
Andreas Kohlbecker
02:50 PM Revision b6ace648 (cdmlib): using the new search method in the controlers and fixing a bug with missing grouping_by field
Andreas Kohlbecker
02:02 PM Revision 6280e639 (cdm-dataportal): using new freetext taxon search in portal + fixing problem in settings
Andreas Kohlbecker
02:02 PM Revision 8faca2e1 (cdm-dataportal): comment to maps
Andreas Kohlbecker
01:22 PM Revision 2c5f5b34 (cdmlib): changes on Widgetset
Alexander Oppermann
01:18 PM Revision 2bad9416 (cdmlib): changes on Widgetset
Alexander Oppermann
10:03 AM feature request #3734 (Closed): Stop separating term and schema update
This creates problems if you go for more then 1 update. Terms may not work with the latest version of the schema. Che... Andreas Müller
09:08 AM Revision 3c462983 (cdmlib): - fixed BioCASE query XML
Patrick Plitzner

09/25/2013

05:23 PM Revision d748f4f4 (taxeditor): merge-update from trunk
Patrick Plitzner
04:56 PM Revision 423c7510 (taxeditor): - added more information to results
Patrick Plitzner
04:51 PM Revision 85e782b2 (taxeditor): merged latest model changes from trunk
Cherian Mathew
04:43 PM Revision 27f5197f (taxeditor): adapting to latest model changes for change of package
Cherian Mathew
04:23 PM Revision 2fe1fe8f (taxeditor): Snapshot branch for version 3.3.0-SNAPSHOT
Cherian Mathew
04:23 PM Revision 6fb3c431 (taxeditor): Updated version in config files to 3.3.0-SNAPSHOT
Cherian Mathew
04:07 PM Revision 46c12f49 (taxeditor): reintegrated model changes from branch 3.3-MC-SNAPSHOT
Cherian Mathew
03:54 PM Revision bb38665e (cdmlib-apps): reintegrate cdmlib-app-3.3 branch into trunk
Andreas Müller
03:21 PM Revision 752d2335 (cdmlib): reintegrate cdm-3.3 branch into trunk
Andreas Müller
03:14 PM Revision 85b82fb6 (cdmlib): minor
Andreas Müller
03:13 PM Revision 7eb1f517 (cdmlib): change version of parent pom -> 3.3.0
Andreas Müller
03:12 PM Revision cfcdda3c (cdmlib): change version ->3.3.0, move CdmMetaData, change schema version -> 20130924, fix TaxonServiceSearch test, update update-script
Andreas Müller
01:39 PM Revision 3ee20195 (taxeditor): - moved actual query execution from the wizard to the editor
Patrick Plitzner
01:38 PM Revision 854a914f (cdmlib): - added hashCode(), equals(), and toString() method to BioCaseQuery
Patrick Plitzner
01:37 PM Revision a434540d (cdmlib): merge trunk into cdmlib v3.3 branch
Andreas Müller
01:34 PM Revision ccd68eb8 (cdmlib): remove old TermsDataSet
Andreas Müller
01:28 PM Revision d716c44b (cdmlib): merge trunk into cdmlib v3.3 branch
Andreas Müller
01:15 PM Revision e63753b4 (cdmlib): cleaning up
Andreas Kohlbecker
01:14 PM Revision 173f67a2 (cdmlib): adding missing type restriction for common names
Andreas Kohlbecker
12:44 PM Revision 0ce81abb (cdmlib): comment automated writing of test dataset
Andreas Müller
12:43 PM Revision 6a9ce9d3 (taxeditor): - commented compile errors due to model changes (Ticket #3732)
Patrick Plitzner
12:42 PM Revision e7cf324d (cdmlib): minor
Andreas Müller
12:05 PM Revision 6ac58758 (taxeditor): - commented compile errors due to model changes (Ticket #3732)
Patrick Plitzner
12:00 PM bug #3732 (New): adapt DerivedUnitBaseDetailElement and PreservationMethodMenuPreferences to cdm model changes
PreservationMethod has become a subclass of MaterialOrMethodEvent with a DefinedTerm containing the information of th... Patrick Plitzner
11:38 AM Revision 43dcd8e2 (cdmlib): fixing invalid test data
Andreas Kohlbecker
11:11 AM Revision b623f722 (taxeditor): merged trunk into branch
Patrick Plitzner
11:07 AM Revision 5552e3cf (cdmlib): commenting potential bug, see #3728 (DescriptionListPortalController.getDescriptionElementsForTaxon() seems to be using inapproptiate init strategy)
Andreas Kohlbecker
11:07 AM Revision 6788c990 (cdmlib): documentation
Andreas Kohlbecker
11:07 AM Revision 8657812d (cdmlib): commenting out non working part of test, see #3730 (Taxon.removeTaxonRelation() raises error on update)
Andreas Kohlbecker
11:07 AM Revision b75051b1 (cdmlib): all search tests running successful
Andreas Kohlbecker
11:07 AM Revision 63c4d12f (cdmlib): implemnting TaxonRelationshipClassBridge to also allow filtering misapplications by distribution, but run into a potential java bug which is really weired the solution i found to circumvent it is documented in TaxonServiceImpl.java
Andreas Kohlbecker
11:07 AM Revision e85caaae (cdmlib): TODO comment to the ClassInfoBridge
Andreas Kohlbecker
11:07 AM Revision e18a1639 (cdmlib): another TODO comments regarding the AcceptedTaxonBridge
Andreas Kohlbecker
11:07 AM Revision 4636717c (cdmlib): another TODO comments regarding the AcceptedTaxonBridge
Andreas Kohlbecker
11:07 AM Revision 41bb4c3b (cdmlib): search by synonym also working with distrubution filter. TODO comments to the AcceptedTaxonBridge
Andreas Kohlbecker
11:07 AM Revision da9fe05a (cdmlib): adding missing @Override
Andreas Kohlbecker
11:07 AM Revision 73785906 (cdmlib): changing test data a little bit
Andreas Kohlbecker
11:07 AM Revision 2481bd0b (cdmlib): distribution filter now working for taxon search by common names. commit includes results from research on best way to imnplement this
Andreas Kohlbecker
11:06 AM Revision f1fd0785 (cdmlib): refactoring for a lucene cross index search
Andreas Kohlbecker
11:06 AM Revision 1b4a1874 (cdmlib): further tests show that cross index search is not working, commenting out these tests for refactoring
Andreas Kohlbecker
11:06 AM Revision b2ccab05 (cdmlib): turning off spell check index purging
Andreas Kohlbecker
11:06 AM Revision 652fe14a (cdmlib): filtering of lucene searches by distributions basically implemented, needs to be improved though
Andreas Kohlbecker
11:04 AM Revision 5c3e7cc7 (taxeditor): reintegrated 3.2.4 SNAPSHOT
Patrick Plitzner
11:00 AM Revision f6a8dc56 (taxeditor): merged model adaptions to cdmlib 3.2.4 from campanula branch
Patrick Plitzner
10:28 AM feature request #2975 (In Progress): Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
Andreas Müller

09/24/2013

11:24 AM Revision 52198e03 (taxeditor): merge-update from trunk
Patrick Plitzner

09/23/2013

05:54 PM Revision 9b2cbc32 (taxeditor): - adapted AbcdImportWizard to model (using input stream as input)
- added exception logging Patrick Plitzner
05:48 PM Revision 5f7fd72e (taxeditor): - added new DataImportEditor for displaying/editing results of specimen search wizard
- disabled PreservationMethod related widget as they have not been adapted to the model changes yet Patrick Plitzner
01:52 PM Revision 6ea38932 (cdmlib): *bug fix for taxonNode which have no classification
Alexander Oppermann
01:11 PM Revision 9e59c2ac (taxeditor): - @Override annotation
- fixed some more warnings Patrick Plitzner
11:59 AM Revision 81b909ab (cdmlib): \
Alexander Oppermann
11:57 AM Revision 656c531d (cdmlib): added a simple wizard
Alexander Oppermann

09/20/2013

06:05 PM Revision 89a75777 (utis-core): more updates for the new GBIF API, including manual merge from Fran's fork
Cherian Mathew
04:48 PM Revision fd3df06e (cdmlib): *further adds for wizard
Alexander Oppermann
04:47 PM Revision 2f8a7a25 (cdmlib): added Wizard, and excel export
Alexander Oppermann

09/19/2013

06:30 PM Revision d92b6993 (cdmlib)
Lorna Morris
06:30 PM Revision 4a0c2989 (cdmlib): Added method to upload transformed xml to mediwiki
Lorna Morris
06:25 PM Revision 38f21307 (cdmlib): some merging with Lorna
Sybille Bürs
05:50 PM Revision 94ac8c33 (cdmlib): Added new classes to import mediwiki files uwing Mediwiki API.
Lorna Morris
04:36 PM Revision 5529882a (utis-core): initial commit for PESI related stuff
Cherian Mathew
04:34 PM Revision ee9fc568 (utis-core): updates for new GBIF api, version changes, added version of workflow which targets beta interaction pages
Cherian Mathew
03:46 PM Revision 2b38907f (cdmlib): - merged changes from campanula branch
- added BioCASE query support to cdmlib-ext Patrick Plitzner
03:33 PM Revision 64c9b080 (cdmlib): fix ABCD import
Andreas Müller
03:31 PM Revision fb297954 (cdmlib): minor
Andreas Müller
03:23 PM Revision bc0bd9a4 (cdmlib): moving preferences into new package and some minor changes
Andreas Müller
01:36 PM Revision 4fc358e2 (cdmlib): minor
Andreas Müller
01:34 PM Revision f96df645 (cdmlib): refactor Abcd import so that save can be handled separately, not yet complete
Andreas Müller
01:32 PM Revision 6462dfe0 (cdmlib): change cdmApp type in ioConfig to interface #3726
Andreas Müller
01:31 PM Revision 58bafdd8 (cdmlib): minor
Andreas Müller
12:10 PM Revision 37b477d5 (cdmlib): just commit to be able to revert locally
Sybille Bürs
10:11 AM Revision b672d5ca (taxeditor): Snapshot branch for version 3.2.4-SNAPSHOT
edit-jenkins
10:11 AM Revision 427996e9 (taxeditor): Updated version in config files to 3.2.4-SNAPSHOT
edit-jenkins

09/18/2013

03:12 PM Revision 197336ef (cdmlib): created local tmp folder to store the mediawiki xml source file
Sybille Bürs
03:11 PM Revision a3e32c88 (cdmlib): merge-update from trunk
Patrick Plitzner
02:46 PM Revision 3d9822eb (cdmlib): commit after an other merge from trunk
Sybille Bürs
02:43 PM Revision b1e8b231 (cdmlib): Added cichorieae to test XML output in PublisherTest
Lorna Morris
02:40 PM Revision 0b257e47 (cdmlib): Add getReferences method so references now harvested in the XML output for print publishing.
Lorna Morris
12:21 PM Revision 2e408754 (cdmlib): commit after merging from trunk
Sybille Bürs
10:30 AM Revision 411b32b4 (taxeditor): - changed cdm dependency to 3.2.4
Patrick Plitzner
10:29 AM Revision c7af639c (taxeditor): - added BioCaseQuery to the API
- adapted taxeditor
- this is EXPERIMENTAL
Patrick Plitzner

09/17/2013

02:56 PM Revision 810b7215 (cdmlib): merge trunk into v3.3 branch
Andreas Müller
02:43 PM Revision 57b4a945 (cdmlib): *Vaadin Update to 7.1
*Fixed path in web.xml
*fixed issue with heartbeat
*update of AppWidgetSet
Alexander Oppermann
02:29 PM Revision 34f7342e (taxeditor): - renamed ComboFieldController to ComboDefinedTermController
Patrick Plitzner
02:27 PM Revision 4f70cce5 (taxeditor): - adapted WaterbodyOrCountry separation
Patrick Plitzner
11:30 AM Revision 53ada01e (taxeditor): merge-update from 3.3 branch
Patrick Plitzner
11:19 AM Revision 602b224c (taxeditor): - added debug text field to result wizard page
Patrick Plitzner
10:42 AM Revision 199ed72a (cdmlib): change parent pom version in 3.3
Andreas Müller
10:41 AM Revision 39e7733f (cdmlib): minor
Andreas Müller
10:40 AM Revision 239cfeb8 (cdmlib): some more changes to CdmPreferences including key size
Andreas Müller
10:37 AM Revision ba5668d3 (cdmlib): Some more changes to Preference service
Andreas Müller
09:49 AM Revision c6c03f97 (taxeditor): - added source code to cdm libs
Patrick Plitzner

09/16/2013

04:04 PM Revision 22254c3f (cdmlib): just changed paths to relative
Sybille Bürs
02:22 PM Revision 2f87b374 (cdmlib): some better implementation for CdmPreferences dao including some tests #3555
Andreas Müller
02:06 PM Revision 4679014d (cdmlib): Added a new output module for print publishing of Mediawiki files.
Lorna Morris
01:13 PM Revision 3a3d2816 (cdmlib): minor
Andreas Müller
12:58 PM Revision 55a9bac0 (cdmlib): move AbstractStringComparator to cdmlib-commons and refactor a bit
Andreas Müller
11:57 AM Revision a3326dd6 (cdmlib): exchange comments on treeNodes for issues related to OrderColumn (#3722)
Andreas Müller
10:57 AM task #3722 (Closed): Using @OrderColumn does not work in trees
For TaxonNode trees and feature node trees we tried do use @OrderColumn annotation for automated sortindex. However t... Andreas Müller

09/13/2013

04:10 PM Revision 63296b3d (cdmlib): removing problematic ids from result data set
Andreas Kohlbecker
04:10 PM Revision ec4f0881 (cdmlib): search for misapplied name implemented in findTaxaAndNamesByFullText() also adapting testdata and fixing a big bunch of problems with grouping and other freetext search features
Andreas Kohlbecker
04:10 PM Revision 823cf53f (cdmlib): adding dependency for lucene-join
Andreas Kohlbecker
04:10 PM Revision 132309a0 (cdmlib): cleaning up
Andreas Kohlbecker
04:10 PM Revision 6001b224 (cdmlib): adapting test data to changes in previous commit
Andreas Kohlbecker
04:10 PM Revision eeafb0fc (cdmlib): problem of termloading which was overriding hibernate_sequences in testdatasets solved
Andreas Kohlbecker
04:10 PM Revision c151707b (cdmlib): first implementation towards a full functional TaxonService.findTaxaAndNamesByFullText() 2
Andreas Kohlbecker
04:10 PM Revision 2d1bfb73 (cdmlib): first implementation towards a full functional TaxonService.findTaxaAndNamesByFullText()
Andreas Kohlbecker
04:10 PM Revision df89da4d (cdmlib): adding method documentation
Andreas Kohlbecker
02:06 PM Revision f352fc6f (cdmlib): javadoc for amplification
Andreas Müller
01:30 PM Revision d0fbf21c (cdmlib): some bugfixes for TaxonNode sorting #3508
Andreas Müller

09/12/2013

09:30 PM Revision e6c18d2b (cdmlib): minor
Andreas Müller
09:30 PM Revision b79c5c7b (cdmlib): minor
Andreas Müller
02:55 PM Revision 9510dca4 (cdmlib): partial implementation of CDM preferences (dao, service and enums): #3555
Andreas Müller
02:49 PM Revision 89985892 (taxeditor): - added source code to cdm libs
Patrick Plitzner
02:49 PM Revision 877628fe (taxeditor): - added specimen search wizard (no functionality yet)
Patrick Plitzner
02:48 PM Revision 659ffe12 (cdmlib): rename ISectionBase -> ISection
Andreas Müller
02:31 PM Revision 0b49080a (cdmlib): implement Section as ReferenceType #2853
Andreas Müller
02:22 PM Revision 7feeeef0 (cdmlib): as my last branch is broken i start a new one
Sybille Bürs
01:48 PM Revision 5f23090b (cdmlib): Javadoc for DnaMarker
Andreas Müller
01:48 PM Revision 101e1952 (cdmlib): Javadoc for molecular classes
Andreas Müller
01:24 PM feature request #3685 (New): Open tissue sample and molecular issues
Andreas Müller
01:24 PM feature request #3685 (In Progress): Open tissue sample and molecular issues
Andreas Müller
01:23 PM feature request #3685 (Resolved): Open tissue sample and molecular issues
Andreas Müller

09/11/2013

11:49 PM Revision dea864ea (cdmlib): minor
Andreas Müller
06:43 PM Revision f8d69f2a (cdmlib): - fixed bug #3695 (Description elements do not appear in data portal if there is only one element)
Patrick Plitzner
05:03 PM Revision 00e9083c (cdmlib): rename materialMethodTerm -> definedMaterialOrMethod
Andreas Müller
04:31 PM Revision ba08dfd7 (cdmlib): final implementation of MaterialOrMethodEvent, Cloning, PreservationMethod, ... #3360
Andreas Müller
02:36 PM Revision b20bd122 (cdmlib): as reintegration failed i copied the statistic files manually into the trunk, and now commit
Sybille Bürs
02:23 PM Revision 1219d74b (cdmlib): as reintegration failed i copied the statistic files manually into the trunk, and now commit
Sybille Bürs

09/10/2013

05:16 PM Revision 7689590d (cdm-dataportal): fixing broken distribution maps for palmweb
Andreas Kohlbecker
05:16 PM Revision 6bbf4d45 (cdm-dataportal): avoiding php notices - cleaning code
Andreas Kohlbecker
04:25 PM Revision 6f1a217c (cdm-dataportal): implementing #3710 (Refresh button for cdm node type pages)
Andreas Kohlbecker

09/09/2013

04:10 PM Revision 77884310 (cdmlib): add serId
Andreas Müller
03:54 PM Revision 03688f95 (cdmlib): update script for vocabulary representations #3708 and some bugfixes on vocabularies and code
Andreas Müller
03:01 PM Revision 4792c243 (cdmlib): minor
Andreas Müller
02:59 PM Revision 9e2a5d33 (cdmlib): add new derivation events #3714
Andreas Müller
12:56 PM feature request #3709 (Resolved): [E+M][Editor] sufficient rights management for E+M workflow
Implement rights management and roles etc. which is needed for the E+M workflow:
## Groups and Authorities
...
Andreas Kohlbecker
12:00 PM Revision 80ee2b55 (cdmlib): minor
Andreas Müller

09/07/2013

03:47 AM Revision d9a16e4f (cdmlib): fix mixing abbrevLabel and label in VocabularyCreator
Andreas Müller
03:38 AM Revision 884b63a3 (cdmlib): fix #3550 (duplicated reading of TermVocabulary representations during term loading)
Andreas Müller
02:57 AM Revision 316ca07c (cdmlib): drop sequence identifiable entity tables in update script #3360
Andreas Müller
02:39 AM Revision 986ce3b4 (cdmlib): Change WaterbodyOrCountry name to Country #3700
Andreas Müller
02:37 AM Revision 15348b34 (cdmlib): Change WaterbodyOrCountry name to Country #3700
Andreas Müller
01:16 AM Revision 7c6bc637 (cdmlib): move static waterbody methods to NamedArea
Andreas Müller
01:05 AM Revision 0df25200 (cdmlib): minor
Andreas Müller
01:00 AM Revision 90ce872b (cdmlib): update waterbody uuids in class, csv and TermsDataSet
Andreas Müller
12:56 AM Revision 95938aa3 (cdmlib): adapt DTYPE and orderindex for waterbody #3700 and update uuids #3705
Andreas Müller

09/06/2013

11:41 PM feature request #3707: Implement Measurement Unit in common Ontology (e.g. QUDT)
see also #3089
Andreas Müller
11:02 PM feature request #3707 (New): Implement Measurement Unit in common Ontology (e.g. QUDT)
There is
* QUDT (http://qudt.org/) (https://terminologies.gfbio.org/terminology/?ontology=QUDT) or
* https:/...
Andreas Müller
11:39 PM Revision 2b73b94a (cdmlib): remove measurement unit dummy, replace by meter and second
Andreas Müller
11:37 PM Revision 54ccc2d6 (cdmlib): move code
Andreas Müller
11:33 PM Revision 187e41ae (cdmlib): update some vocabulary labels and descriptions
Andreas Müller
11:24 PM Revision f173009d (cdmlib): Change WaterbodyOrCountry representation
Andreas Müller
09:58 PM Revision 30178240 (cdmlib): remove dummy terms with update script #3706
Andreas Müller
06:25 PM Revision 0d00e4ea (cdmlib): Update script for WaterbodyOrCountry splitting #3700 (no Class name change yet)
Andreas Müller
04:19 PM Revision 8221da02 (cdmlib): add hierarchical information to DnaMarker vocabularies #3591
Andreas Müller
04:17 PM Revision 593f664f (cdmlib): update NomenclaturalCode.csv to use ICNAFP
Andreas Müller
04:16 PM Revision 14149f73 (cdmlib): allow DefinedTerms to be partOf
Andreas Müller
04:14 PM Revision 119f3ec7 (cdmlib): split Waterbody and Country vocabulary and make waterbody an ordinary NamedArea #3700
Andreas Müller
12:41 AM Revision 639679e0 (cdmlib): Chloroplast DNA Markers and some more Eukaryotes #3591
Andreas Müller

09/05/2013

11:17 PM Revision 485377e3 (cdmlib): bugfix for DOI handling
Andreas Müller
11:14 PM Revision 68df4d39 (cdmlib): bugfix for DOI handling
Andreas Müller
05:09 PM Revision cea38aea (cdmlib): implement DOI class and use in Reference #3572
Andreas Müller
05:06 PM Revision 87e91505 (cdmlib): implement DOI class and use in Reference #3572
Andreas Müller
03:06 PM Revision f56b1626 (cdm-dataportal): solving #3377 (search results on only one classification should never show the classifiation information)
Andreas Kohlbecker
01:12 PM Revision 1758ca58 (cdm-dataportal): modification for second part of #3703 ( Show Thumbnails shown even if thumbnails options are not checked in the setting) - hide "Show thumbnails "
Andreas Kohlbecker
01:04 PM Revision c5ed6357 (cdm-dataportal): fixing #3703 ( Show Thumbnails shown even if thumbnails options are not checked in the setting)
Andreas Kohlbecker

09/04/2013

05:53 PM Revision f3c13f67 (cdmlib): remove TODO
Andreas Müller
05:53 PM Revision 0f9d4e5a (cdmlib): Allow access to hibernate dialect via DatabaseTypeEnum, use this for foreign key handling in TableCreator and ColumnAdder/Changer
Andreas Müller
05:23 PM feature request #3702 (Resolved): WaterbodyOrCountry ISO 3166 alpha-3 code should be available as attribute
Andreas Müller
05:21 PM feature request #3702 (Closed): WaterbodyOrCountry ISO 3166 alpha-3 code should be available as attribute
Currently the ISO alpha-3 code is only available as abbreviated label of the english representation. We should have a... Andreas Müller
05:23 PM feature request #2302: Include ISO-3166 numeric codes to Country
moved ISO alpha-3 issues to separate ticket #3702 and renamed this ticket
Andreas Müller
05:17 PM feature request #2302 (New): Include ISO-3166 numeric codes to Country
Andreas Müller
04:45 PM feature request #2302 (In Progress): Include ISO-3166 numeric codes to Country
Andreas Müller
05:10 PM Revision 1636b90f (cdmlib): move specimen images in update script and use class changer to change SpecimenOrObservation classes
Andreas Müller
04:36 PM feature request #3697: Distinguish display of fossil and "normal" occurrence records in specimen map
Ok, then lets try different layers for the fossil/non-fossil problem please!
If different colors are easy to achiev...
Gabriele Dröge
12:59 PM feature request #3697: Distinguish display of fossil and "normal" occurrence records in specimen map
Replying to [[comment1|a.kohlbecker]]:
> I think we should allow differentiating between point representing observat...
Andreas Kohlbecker
12:58 PM feature request #3697: Distinguish display of fossil and "normal" occurrence records in specimen map
I think we should allow differentiating between point representing observations, specimens and fossils.
> We should...
Andreas Kohlbecker

09/03/2013

06:13 PM Revision 6b2a13b1 (cdmlib): evaluate data with existing publish marker #1780
Andreas Müller
05:20 PM feature request #3697 (New): Distinguish display of fossil and "normal" occurrence records in specimen map
Fossil records are telling a different story of distribution/occurrence of a taxon than classical occurrence records.... Gabriele Dröge
04:02 PM Revision 648a8e05 (cdmlib): bugfix for correct time for term and vocabulary creation
Andreas Müller
03:59 PM Revision 3302d811 (cdmlib): bugfix for correct time for term and vocabulary creation
Andreas Müller
03:47 PM Revision 2fae2092 (cdmlib): use correct time for term and vocabulary creation
Andreas Müller
03:26 PM Revision ee1ce884 (cdmlib): rename getRankByAbbrev methods to getRankByIdInVoc #3479
Andreas Müller
03:24 PM Revision 89977c9d (cdmlib): conservative language handling for nomenclatural status type #3545
Andreas Müller
03:21 PM Revision 5c73b94f (cdmlib): minor
Andreas Müller
03:18 PM Revision 220aeb0f (cdmlib): use latin for new combination #3545
Andreas Müller
03:17 PM Revision be4c83b4 (cdmlib): add hibernate_sequences handling to table changing updaters
Andreas Müller
03:08 PM Revision 017f612c (taxeditor): merge-update from trunk
Patrick Plitzner
02:44 PM Revision c61ce55a (cdmlib): allow failing hibernate_sequence update
Andreas Müller
01:32 PM Revision 66262a7f (cdmlib): fix duplicate idInVocabulary in term loading and schema updater #3479
Andreas Müller
12:30 PM Revision 496d0049 (taxeditor): - fixed the link in CollectionSelectionDialog and InstitutionSelectionDialog to create a new entity
- found strange bug in org.eclipse.swt.widgets.Link described in Ticket #3691 Patrick Plitzner
12:22 PM Revision fed30036 (cdmlib): bugfix for treeindex updater
Andreas Müller
09:55 AM Revision 6e70f53c (taxeditor): - fixed enabling of specimen fields in wizard
Patrick Plitzner
09:00 AM Revision 303168c1 (taxeditor): - fixed DetailsViewer (show Specimen details view as default for DerivedUnits)
Patrick Plitzner

09/02/2013

07:04 PM Revision a56b89e0 (taxeditor): - completed Specimen and FieldObservation view + wizards
Patrick Plitzner
06:02 PM Revision cb215629 (cdmlib): Bugfix for rankClass update in term updater
Andreas Müller
05:56 PM Revision 39ec02fa (taxeditor): - unified specimen and field observation controller and view elements
Patrick Plitzner

08/30/2013

06:08 PM Revision ce28d7ca (cdmlib): minor javadoc
Andreas Müller
05:51 PM Revision 1d358b91 (cdmlib): persist Sequence direction via enum key #3686
Andreas Müller
05:49 PM Revision b3dd7ae5 (cdmlib): fix termupdating for 31_33
Andreas Müller
05:48 PM Revision 4ae2b826 (cdmlib): fix termupdating for 31_33
Andreas Müller
05:47 PM Revision dbf43296 (cdmlib): fix update hibernate_sequences
Andreas Müller
05:42 PM Revision f966cf6d (cdmlib): fix bugs in termupdater
Andreas Müller
05:15 PM Revision ca8a9d24 (cdm-server): only transferring the file for the index
Andreas Kohlbecker
11:17 AM Revision cff58e4b (cdmlib): adding FactoryMethods and Constructor to DNA classes and uuid/key for SequenceDirection
Andreas Müller
11:08 AM Revision 95b2566b (cdmlib): minor
Andreas Müller
11:05 AM Revision 37044009 (cdmlib): Change CdmMetaData term version
Andreas Müller
11:02 AM Revision 66590184 (cdmlib): Make InnoDB the default MySQL database system for CDM #3371
Andreas Müller
10:59 AM Revision 9692864e (cdmlib): include more auditing in schema update and refactor to better allow transaction support for schema updates
Andreas Müller
10:57 AM Revision 66cc80d5 (cdmlib): some javadoc and factory methods
Andreas Müller

08/29/2013

06:28 PM Revision 795fcdb3 (cdm-dataportal): adding warning message to avoid poking around in the dark when choosing empty or othewise 'invalid' classifications
Andreas Kohlbecker
04:51 PM Revision 5dfb016f (cdm-server): fixing redirect url for servers not running at the server root
Andreas Kohlbecker
04:51 PM Revision 46baa376 (cdm-server): removing extra file separator from path
Andreas Kohlbecker
03:42 PM Revision b04ed1c3 (taxeditor): merge-update from trunk
Patrick Plitzner
03:14 PM Revision 6ea34d89 (taxeditor): - added spring sources to classpath
Patrick Plitzner
01:52 AM feature request #3685 (In Progress): Open tissue sample and molecular issues
this ticket holds all remaining tasks for #3360
Open fields from Excel tabel:
* Separate class for tissue sam...
Andreas Müller
 

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