cleanup
ref #6362 removed some NonViralName occurrences (non-compiling as changing in model are still missing)
Revert "Revert "ref #6369 Add interfaces for TaxonNameBase and NonViralName""
This reverts commit 949c09b142f2806539e3fb399bef980d3e17e293.
Revert "Revert "fix #6360 moved all NonViralName functionality to TaxonNameBase""
This reverts commit 9b9d0a956d78e3aec1024bc0a5fa33f33e5b33aa.
Revert "fix #6360 moved all NonViralName functionality to TaxonNameBase"
This reverts commit 7d8c96134bda3c11d053df2e8e5d03f32a500ee3.
Revert "ref #6369 Add interfaces for TaxonNameBase and NonViralName"
This reverts commit 1e42628a4c24232f9b03a2a1e508d7cd79e0e0ba.
ref #6369 Add interfaces for TaxonNameBase and NonViralName
fix #6360 moved all NonViralName functionality to TaxonNameBase
ref #6190 removing svn property place holder in first line of code
ref #3658 further improvements for NomCode update
ref #3658 Update nomenclatural code as CdmPreference (most probable value)
ref #5974 Replace synonymRelationshipType by SynonymType and replace some other occurrences of synonym relationship
#5981 Add abbreviation to Rank "Cultivar"
Add isInfraGenericButNotSpeciesGroup() method to Rank
Add "ined." as nomenclatural status #5896
Clean up
Further develop the CDM preferences #3958
Remove generics from Reference in cdmlib-model #5830
minor
fix #5669
Update javadoc and illegitimate status for NomenclaturalStatusType.CONS_DESIG #5662
Remove nomenclatural status type ined. as it is a duplicate for nom. provis. (related to Cuba #5443)
Added nom. cons. des. status #5662
Apply HomotypicGroupTaxonComparator to all existing uses of old TaxonComparator #3338
Cleanup
Add Orthography Rejected to NomenclaturalStatusType #5649
Improve sort order within a homotypic group (new Comparator) #3338
Add post-separator to better handle tagged text
Add separator after nom status in taxon titleCache #5576
Allow recognizing forma in ranks
Use correct column length annotation #5535
Javadoc
Add commented base code for guessBasionym function to Homotypical group
resolving conflicts after merge of ticket_4716 into develop
Some minor markup routine updates
organizing imports
#4716 reduicing clutter in the lucene index and solving performance problems which probably fixes #4277 and #3663
#4761 removing @Indexed from abstract base classes since hibernate now fully supports polymorph class hierarchies
changes for #4960 and #4959
Fix issues after rebase #4716
fixing #4878
Revert "minor"
This reverts commit 64367d007ba404e037ccc2b6794b46c4f1f321bc.
#5259 Add method to init defaul terms
changes for tcs import, fixing taxonnodecomparator, polytomouskey deletion and converting from person to team and team to person
#5161 Add initListener method to CdmBase object
#5067 Updates for remoting derivate hierachy views
Fix unparsed sections and subsections #4764
Rename remaining occurrences of xxxAuthorTeam #4968
Rename remaining occurrences of combinationAuthorTeam and basionymAuthorTeam in code and other files
Rename NonViralName.xxxAuthorTeam to xxxAuthorship #4968
Merge branch 'master' of wp5.e-taxonomy.eu:/var/git/cdmlib into remoting-4.0
Conflicts: cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTerm.java cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NonViralName.java cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/INameService.java...
rename authorTeam -> authorship #4332 for name authors
last changes for #4869
fix for #4869
Conflicts: cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTerm.java cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTermBase.java cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/Reference.java...
fix remove hybrid method (related to #2576)
added not blank handling for potential notEmpty strings #4653
added not blank handling for potential notEmpty strings #4653 , solving compilation issues
fix hybrid parsing with existing hybrid relationships #2576
fixing infinite loop in HybridRelationship.compareTo #2576
adapting the setters of attributes with @NullOrNotEmpty annotations #4653
Make deduplication of TeamOrPersonBase possible in cdmlib #4768 and solve test problem in CdmGenericDaoImplTest #2096, finding some bugs in between
merge validation2 and model 3.5 into trunk
removed unused imports
updated getTermByUuid methods in the term classes to use the cacher
ICdmCacher, ICdmUuidCacher, CdmCacher, CdmTermCacher : refactored and added load method Language, NameRelationshipType, Rank : now uses cacher only if termap is null or empty and only when class matches the specific term type MockCdmCacher: not required anymore...
added Cascade.MERGE to all fields with annotation Cascade.SAVE_UPDATE
return nameRelationship
adapted tcs rdf and xml import, using apache jena for rdf import tcs import for caryophylales minor
typos
reverting hack related to #4368 (caching api causes bug in Rank.getAbbreviation())
refactoring taxon controllers, reducing code duplication
Change authorTeam types in NonViralName from INomenclaturalAuthor to TeamOrPersonBase #1489
First commit for the CDM Caching api ICdmCacher, CdmCacher : CDM Cache class based on Ehcache defaultApplicationContext.xml : added cache package to be component scanned DefinedTermBase : new set/getCdmCacher method to make cacher available to term classes...
improve to better fulfill the Comparator contract
serial Version ID for HomGroup
#4114 sort order in taxon navigator and adding that autonyms could be whether infraspecific or infrageneric (Art. 22.3 and 26.3)
add NomStatus vocabulary for ICZN #4085
Added IsoParaType to SpecimenTypeDesignationStatus
remove CopyOnWriteArrayList
add link to ticket #3596
clean up and remove redundant !removed: #3596
remove empty lines
#3596
fix sort order bug for lazy initialized names
add isSpeciesAggregate delegate method
Remove javadoc in Rank
merging delete functionality into trunk
rename getRankByAbbrev methods to getRankByIdInVoc #3479
conservative language handling for nomenclatural status type #3545
merge trunk into cdm3.3 branch
replace specification by specialization