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bug #5556
closedClass Cast Exception in DefinedTermDaoImpl.getPartOf
Added by Andreas Müller over 8 years ago. Updated over 1 year ago.
Start date:
Due date:
% Done:
100%
Estimated time:
Severity:
normal
Found in Version:
Description
The following CCE appeared when calling DescriptionPortalController.doGetDistributionInfo.
Class casting is not correct in getPartOf (and maybe similar methods !!) as it takes the class of the first term and applies it to all other terms.
Caused by:
java.lang.ClassCastException: Cannot cast eu.etaxonomy.cdm.model.location.NamedArea to eu.etaxonomy.cdm.model.location.Country
at java.lang.Class.cast(Class.java:3176)
at eu.etaxonomy.cdm.hibernate.HibernateProxyHelper.deproxy(HibernateProxyHelper.java:34)
at eu.etaxonomy.cdm.model.common.CdmBase.deproxy(CdmBase.java:312)
at eu.etaxonomy.cdm.persistence.dao.hibernate.common.DefinedTermDaoImpl.getPartOf(DefinedTermDaoImpl.java:626)
at eu.etaxonomy.cdm.api.service.DistributionTree.loadAllParentAreas(DistributionTree.java:126)
at eu.etaxonomy.cdm.api.service.DistributionTree.orderAsTree(DistributionTree.java:97)
at eu.etaxonomy.cdm.api.utility.DescriptionUtility.orderDistributions(DescriptionUtility.java:261)
at eu.etaxonomy.cdm.ext.geo.EditGeoService.composeDistributionInfoFor(EditGeoService.java:385)
at sun.reflect.GeneratedMethodAccessor1729.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204)
Related issues
Updated by Andreas Müller over 8 years ago
Full stacktrace in CDM Server was:
Caused by:
org.springframework.web.util.NestedServletException: Request processing failed; nested exception is java.lang.ClassCastException: Cannot cast eu.etaxonomy.cdm.model.location.NamedArea to eu.etaxonomy.cdm.model.location.Country
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:948)
at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:827)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:687)
at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:812)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:808)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:118)
at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:84)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:113)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:103)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:113)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:54)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:45)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilter(BasicAuthenticationFilter.java:150)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
at org.springframework.security.web.authentication.ui.DefaultLoginPageGeneratingFilter.doFilter(DefaultLoginPageGeneratingFilter.java:91)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
at org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:183)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:105)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:87)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:342)
at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:192)
at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:160)
at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:259)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652)
at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652)
at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:585)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:577)
at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:223)
at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1127)
at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515)
at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1061)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:215)
at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97)
at org.eclipse.jetty.server.Server.handle(Server.java:497)
at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:310)
at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257)
at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:540)
at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635)
at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.ClassCastException: Cannot cast eu.etaxonomy.cdm.model.location.NamedArea to eu.etaxonomy.cdm.model.location.Country
at java.lang.Class.cast(Class.java:3176)
at eu.etaxonomy.cdm.hibernate.HibernateProxyHelper.deproxy(HibernateProxyHelper.java:34)
at eu.etaxonomy.cdm.model.common.CdmBase.deproxy(CdmBase.java:312)
at eu.etaxonomy.cdm.persistence.dao.hibernate.common.DefinedTermDaoImpl.getPartOf(DefinedTermDaoImpl.java:626)
at eu.etaxonomy.cdm.api.service.DistributionTree.loadAllParentAreas(DistributionTree.java:126)
at eu.etaxonomy.cdm.api.service.DistributionTree.orderAsTree(DistributionTree.java:97)
at eu.etaxonomy.cdm.api.utility.DescriptionUtility.orderDistributions(DescriptionUtility.java:261)
at eu.etaxonomy.cdm.ext.geo.EditGeoService.composeDistributionInfoFor(EditGeoService.java:385)
at sun.reflect.GeneratedMethodAccessor1729.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204)
at com.sun.proxy.$Proxy2458.composeDistributionInfoFor(Unknown Source)
at eu.etaxonomy.cdm.remote.controller.DescriptionPortalController.doGetDistributionInfo(DescriptionPortalController.java:258)
at sun.reflect.GeneratedMethodAccessor1728.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.springframework.web.method.support.InvocableHandlerMethod.invoke(InvocableHandlerMethod.java:219)
at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:132)
at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:104)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandleMethod(RequestMappingHandlerAdapter.java:745)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:686)
at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:80)
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:925)
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:856)
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:936)
... 56 more
Caused by:
java.lang.ClassCastException: Cannot cast eu.etaxonomy.cdm.model.location.NamedArea to eu.etaxonomy.cdm.model.location.Country
at java.lang.Class.cast(Class.java:3176)
at eu.etaxonomy.cdm.hibernate.HibernateProxyHelper.deproxy(HibernateProxyHelper.java:34)
at eu.etaxonomy.cdm.model.common.CdmBase.deproxy(CdmBase.java:312)
at eu.etaxonomy.cdm.persistence.dao.hibernate.common.DefinedTermDaoImpl.getPartOf(DefinedTermDaoImpl.java:626)
at eu.etaxonomy.cdm.api.service.DistributionTree.loadAllParentAreas(DistributionTree.java:126)
at eu.etaxonomy.cdm.api.service.DistributionTree.orderAsTree(DistributionTree.java:97)
at eu.etaxonomy.cdm.api.utility.DescriptionUtility.orderDistributions(DescriptionUtility.java:261)
at eu.etaxonomy.cdm.ext.geo.EditGeoService.composeDistributionInfoFor(EditGeoService.java:385)
at sun.reflect.GeneratedMethodAccessor1729.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
Updated by Andreas Müller over 8 years ago
I tried to find relevant data by
select dtb2.* from DefinedTermBase dtb INNER JOIN DefinedTermBase dtb2 ON dtb2.id = dtb.partof_id where dtb.partof_id is not null AND dtb.DTYPE <> dtb2.DTYPE;
WS1 cyryophyllales_test but couldn't find any.
Updated by Andreas Müller over 8 years ago
- Priority changed from New to Priority14
Updated by Andreas Müller over 8 years ago
- Status changed from New to Resolved
should be fixed with r27262.
Can be tested with Lymanbensonia on WS1, Caryophyllales_test, if data wasn't change there in the meanwhile.
Fix went into develop, not hotfix for now.
Updated by Andreas Müller over 8 years ago
- Target version changed from Unassigned CDM tickets to Release 4.0
Updated by Andreas Müller over 1 year ago
- Description updated (diff)
- Status changed from Resolved to In Progress
- Target version changed from Release 4.0 to Release 5.36
Got a very similar problem again:
last remote service : http://132.248.13.83:8080/cdmserver/cdm_flora_mexico/remoting/term.service
last remote method : getDbSchemaVersion
last remote request client time : 2023-03-22T09:13:19.099
last remote request response header time : Wed, 22 Mar 2023 08:12:35 GMT
client error time : 2023-03-22T09:13:19.768
login : admin
editor version : 5.35.0
server : 132.248.13.83 (Mexico) / cdm_flora_mexico
schema version : 5.35.1.0.20221218
os : Windows Server 2012 R2 6.3 amd64
java : 1.8.0_131
org.eclipse.e4.core.di.InjectionException: java.lang.ClassCastException: Cannot cast eu.etaxonomy.cdm.model.location.NamedArea to eu.etaxonomy.cdm.model.location.Country
at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:65)
...
at org.eclipse.equinox.launcher.Main.run(Main.java:1519)
Caused by: java.lang.ClassCastException: Cannot cast eu.etaxonomy.cdm.model.location.NamedArea to eu.etaxonomy.cdm.model.location.Country
at java.lang.Class.cast(Class.java:3369)
at eu.etaxonomy.cdm.hibernate.HibernateProxyHelper.deproxy(HibernateProxyHelper.java:55)
at eu.etaxonomy.cdm.model.common.CdmBase.deproxy(CdmBase.java:339)
at eu.etaxonomy.cdm.model.term.DefinedTermBase.getPartOf(DefinedTermBase.java:291)
at eu.etaxonomy.cdm.model.location.NamedArea.getPartOf(NamedArea.java:281)
at eu.etaxonomy.cdm.model.location.NamedArea.getPartOf(NamedArea.java:1)
at eu.etaxonomy.cdm.persistence.dto.TermDto.fromTerm(TermDto.java:79)
at eu.etaxonomy.cdm.persistence.dto.TermDto.fromTerm(TermDto.java:64)
at eu.etaxonomy.taxeditor.termtree.e4.handler.AbstractAddTermHandler.execute(AbstractAddTermHandler.java:86)
at eu.etaxonomy.taxeditor.termtree.e4.handler.AddTermHandler.execute(AddTermHandler.java:38)
... 36 more
So the problem can't be fixed yet.
Updated by Andreas Müller over 1 year ago
- Status changed from In Progress to Resolved
- % Done changed from 0 to 70
Applied in changeset cdmlib|9911282f76a46d2728fdb67476074376df81f745.
Updated by Andreas Müller over 1 year ago
- Tags changed from mexico_ws to mexico, terms
- Assignee changed from Andreas Müller to Katja Luther
I guess this should be fixed now. Can you please review?
Updated by Andreas Müller over 1 year ago
- Related to feature request #6794: Improve term structure added
Updated by Andreas Müller over 1 year ago
- Related to bug #10277: HibernateSystemException and BridgeException not in taxeditor dependencies added
Updated by Andreas Müller over 1 year ago
- Status changed from Resolved to Closed
- Assignee changed from Katja Luther to Andreas Müller
- % Done changed from 70 to 100
reviewed by reviewing #10277
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