Revision 5acb8103
Added by Andreas Müller over 3 years ago
| eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/CDMSequenceMatrixAdapter.java | ||
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package eu.etaxonomy.taxeditor.molecular.io; |
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import java.io.IOException; |
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import java.net.URI; |
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import java.util.ArrayList; |
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import java.util.Collections; |
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import java.util.Iterator; |
| ... | ... | |
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import javax.xml.namespace.QName; |
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import eu.etaxonomy.cdm.common.URI; |
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import eu.etaxonomy.cdm.model.molecular.Sequence; |
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import eu.etaxonomy.cdm.model.molecular.SingleReadAlignment; |
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import eu.etaxonomy.taxeditor.molecular.editor.e4.AlignmentEditorE4; |
| ... | ... | |
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URI pherogramURI = AlignmentEditorE4.getPherogramURI(singleRead.getSingleRead()); |
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if (pherogramURI != null) {
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JPhyloIOWritingUtils.writeTerminalResourceMetadata(receiver, createMetadataID(sequenceID, PREDICATE_HAS_PHEROGRAM), |
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null, PREDICATE_HAS_PHEROGRAM, pherogramURI); |
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null, PREDICATE_HAS_PHEROGRAM, pherogramURI.getJavaUri());
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} |
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writeMetadataEvents(receiver, sequenceID, PREDICATE_HAS_PHEROGRAM_ALIGNMENT, DATA_TYPE_PHERORAGM_ALIGNMENT, singleRead.getShifts()); |
Also available in: Unified diff
ref #9114 adapt some classes with URI to wrapper in taxeditor (cont.)