EDIT

adding transient annotaion so that it is ignored in serializing

• made move methods session-safe by reloading the cdm entities
  • enhanced/added test
  • made constructor of PreservationMethod protected to avoid JavaAssistEnhancementException

set getDescendants() public

fixing bug for missing reference type

implement cache strategy for section references and remove generics from reference cache strategies.

Add preliminary SectionCacheStrategy and remove generics from reference cache strategies

adding Gazetteer to ReferenceSystem

fix for loading continents correctly

Updated countries #3238

• added cascade saving to PreservationMethod of DerivedUnit

log childIndex is null

fix logging for taxa used multiple times in addParentChild

• added two NewInstance() methods to Amplification
  • added getUuidAndDescriptions to IAmplificationService and DAO

add tests for treeIndex and deletion of nodes

renaming protected setter to setStateData, see #2923 (Rename CategoricalData.states collection to stateData)

• added removeSingleRead() method to Amplification

#4114 sort order in taxon navigator and adding that autonyms could be whether infraspecific or infrageneric (Art. 22.3 and 26.3)

fix compareTo for IdentifiableEntity

• added reference to trac ticket

• made default constructor protected due to a hibernate problem (see https://stackoverflow.com/questions/7273125/hibernate-envers-and-javassist-enhancement-failed-exception)

• fixed a bug in the automated setting of the string length

fix missing idInVocabulary for countries; implement country mapping for EditGeoService (#3452, #3651)

minor

add NomStatus vocabulary for ICZN #4085

Added IsoParaType to SpecimenTypeDesignationStatus

Added IsoParaType to SpecimenTypeDesignationStatus

implementing test and fixing bugs regarding #4081 (TaxonNodeServiceImpl.makeTaxonNodeASynonymOfAnotherTaxonNode() requires TAXONNAMEBASE.[UPDATE])

changed isTopmostNode to check for null parent node taxon

minor

minor

Add database index on treeIndex #4105

minor

improve TaxonCacheStrategy. Use short form where possible

making TaxonNodeByNameComparator truely null save - #2912 (NPE in TaxonNodeByNameComparator when Taxon in TaxoNode is null)

minor

Cleaning up a bit

solving some reference cache strategy issues, e.g. #3645

adding isBlank to StrategyBase

minor

Better handling for short citation of references

minor and generics

• added cascading save to SequenceString of a Sequence

• added cascading save for contig file of Sequence

• added cascading save to pherogram (Media) of SingleRead
  • added media section to DetailsViews for Amplification (gel photo) and SingelRead (pherogram)

implementing #4082 (implement default permission groups)

fix problem with changeSynonymToAcceptedTaxon of a synonym being part of an homotypical group

improve author parsing

toString for Reference

minor

minor

correct generics for classification

make description.setTaxon protected and cleanup cyprus altitudes and destinations

User.getAuthorities() made public as preliminary solution to #4053 (Transient field User.authorities not refreshed on reloading entity)

part 1 of fixing #2414 (Group updating doesn't work) by using CascaseType.REFRESH and test method extended

fixing and implementing test for #3782 (Security Context is not updated after editing GrantedAuthorities of a Group)

implementing global PUBLISH role, also introducing the interface IPublishable; solves #3980 (Implement PUBLISH role into cdmlib security)

adapt delete of rootnodes

minor

Set setTitleCache to deprecated and add javadoc

minor

add some listeners commented code for Reference class to handle abbrevTitleCache refresh later on

code cosmetics

minor

making boolean methods in TaggedText all Transient #3991

fixing hibernate search annotation

fixing problems related to new taxon node structure

remove publish marker from synonyms #3883

removed tissue as kindOfUnit

remove uri from feature tree #3519

add unknownData to structured descriptive data #2975

schema update to 3.3.1

minor

Fixing some test for new Classification structure in cdmlib-model

rootNode adaption for classification

• made default constructor public to avoid an InstantiationException (see https://stackoverflow.com/questions/7273125/hibernate-envers-and-javassist-enhancement-failed-exception)

again bugfix for DNA URLs

fix bug for getBoldUri

Bug fix for DnaSample record basis

minor changes (remove logging of missing classification)

implementing rule 2 and 3 for #3904 (EuroMed: Implement filtering rules for Distributions) - all existing test running successfully

minor

new factory methods

add putter for locality

add "part" to sequence setter

remove old TDWGArea class

• added removeDescriptions() to IDescribable
  • added @Override

add convenients method for multiple elements

remove CopyOnWriteArrayList

move fields up

add first cascading to AgentBase.contact

javadoc and licence

add link to ticket #3596

clean up and remove redundant !removed: #3596

remove empty lines

Add IDescribable interface #3917

minor

#3596

remove import

remote.xml : added simple rdf marshaller (named rdfMarshaller) for the web service rdf responses
RdfViewTest, OaiPmhViewTest : changed SpringBeanByType annotation to SpringBeanByName since we have now two marshallers (remote.xml)
RdfView, XmlView, OaiPmhResponseView : added qualifier for autowired marshaller since we now have two marshallers (remote.xml)...

simplifying and refactoring the distribution tree implementation, fixes problems in #3475 #2562 #3893