EDIT

added Cascade.MERGE to all fields with annotation Cascade.SAVE_UPDATE

moved publishFlag up to TaxonBase #4046

remove publish marker from synonyms #3883

introcducing NomenclaturalSortOrderBrigde

merge trunk into cdmlib v3.3 branch

merge trunk into cdm3.3 branch

Updating test data for publish flag (III) and removing dataset.dtd from cdmlib-ext

implement publish flag for TaxonBase and SpecimenOrObservationBase #1780 (testdata not yet fixed)

minor

some NOT NULLs and reverting taxonName.authorshipCache = empty

remove model changing validations fix Delete_Orphan #3379

UuidAndTitleCache : added new member isOrphaned (new constructor + getter)
TaxonBase : added getIsOrphaned declaration
Taxon : added getIsOrphaned definition
Synonym : added getIsOrphaned definition (always returns false)

test for TaxonService.findByFullText() successful

introducing the QueryFactory for to modularize lucene query building

reverting erroneously commits r16027 to r16031

test for TaxonService.findByFullText() successful

introducing the QueryFactory for to modularize lucene query building

fix bidirectionality of taxon.name

remove imports

adding permission handling and writing a test for usermanagement

clone methods for TaxonBase, Taxon, Synonym and TaxonNode (#454)

merge 3.0.2 to trunk

removing imports

merge cate-development2 branch with trunk

Added constraints to Taxon.synonymRelations, Synonym.synonymRelations, and SynonymRelationship.relatedFrom & SynonymRelationship.relatedTo to mark orphaned synonyms as invalid. [[https://dev.e-taxonomy.eu/trac/ticket/1347]]

Also, added constraint such that two accepted names or an accepted name and a synonym with the same sec reference and the same name are invalid.

merging branches/cdmlib/2.2 [7345:7377] to trunk

see also:
https://dev.e-taxonomy.eu/trac/changeset?new=branches%2Fcdmlib%2F2.2%407377&old=branches%2Fcdmlib%2F2.2%407345

Finished first pass implementing data constraints on cdmlib-model

Intensive model change for referenceBase and subclass, smaller model changes for taxonBase and marker

Added methods concerning taxonomic tree to taxon service.

minor

Annotated References, Media, and Agents, and also added more data types to the anyTypeDefs to allow more types of data to be annotated and marked etc, and added a jaxb annotation to OriginalSource.sourcedObj

Lots of changes, but primarily:
Enabled the marshalling / unmarshalling of LSIDAuthority
Renamed the User table to UserAccount to avoid problems on SQLServer
Major refactoring of CacheStrategyGenerators so that the generic framework extends across all IIdentifiableEntities, allowing (but not requiring) the use of @Configurable and aop to inject custom cache strategy generators at runtime

reintroducing transient getters where required for cdm-remote; removing cast from inside getNomenclaturalReference(){}

Minor problems discovered whilst refactoring CATE:
Corrections to User / Group / Authority impl
Changes due to upgrade of hibernate-search
change private constructors to protected (due to their handling by hibernate proxies)

Committing large number of changes relating to versioning implementation (#108)

Major changes to the cdmlib default term loading and initialization, plus indexing of some model entities as part of #476

persistentTitleCache -> titleCache

Only documentation

Performed project cleanup.

Improved JAXB annotations for sample DataSet

JAXB marshaling: Added Synonym Relationships

JAXB annotations

JAXB annotations - first drop

specimen

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