b.stoever [Tue, 25 Aug 2015 18:13:05 +0000 (18:13 +0000)]
AlignmentEditorCopyHandler now sets current action status.
b.stoever [Tue, 25 Aug 2015 15:38:58 +0000 (15:38 +0000)]
AlignmentEditorCopyHandler now offers copying functionality as a static method.
Copying not performed, if no nucleotides are selected.
b.stoever [Tue, 25 Aug 2015 15:28:42 +0000 (15:28 +0000)]
Moved functionality to be shared from AlignmentEditorCopyHandler to AlignmentEditor.
AlignmentEditorCopyHandler refactored.
b.stoever [Tue, 25 Aug 2015 15:17:15 +0000 (15:17 +0000)]
Initial implementation of AlignmentCopyHandler finished.
Minor changes.
Patrick Plitzner [Tue, 25 Aug 2015 13:04:32 +0000 (15:04 +0200)]
Add Copy functionality to AlignmentEditor
Patrick Plitzner [Tue, 25 Aug 2015 11:52:07 +0000 (13:52 +0200)]
Merge branch 'develop' into LibrAlign
Cherian Mathew [Tue, 25 Aug 2015 11:09:07 +0000 (13:09 +0200)]
#5160 Use new merge method with ids as arguments
Conflicts:
eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/bulkeditor/input/AgentEditorInput.java
Patrick Plitzner [Tue, 25 Aug 2015 08:21:25 +0000 (10:21 +0200)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into develop
U-BGBM\k.luther [Tue, 25 Aug 2015 07:50:28 +0000 (09:50 +0200)]
fix #5153
U-BGBM\k.luther [Tue, 25 Aug 2015 07:50:28 +0000 (09:50 +0200)]
fix #5153
Patrick Plitzner [Tue, 25 Aug 2015 06:36:27 +0000 (08:36 +0200)]
Externalize Strings
Patrick Plitzner [Tue, 25 Aug 2015 06:22:23 +0000 (08:22 +0200)]
Merge develop into branch
Patrick Plitzner [Tue, 25 Aug 2015 06:15:20 +0000 (08:15 +0200)]
Change order of controls
Patrick Plitzner [Tue, 25 Aug 2015 06:06:59 +0000 (08:06 +0200)]
Use web icon for URL button
Patrick Plitzner [Tue, 25 Aug 2015 06:06:12 +0000 (08:06 +0200)]
Create constant for default column number in detail sections
Patrick Plitzner [Tue, 25 Aug 2015 06:05:51 +0000 (08:05 +0200)]
Split up control creation of TextWithLabelElement
- this fixes layout problems when inserting a separate button for
opening links
Patrick Plitzner [Mon, 24 Aug 2015 17:44:19 +0000 (19:44 +0200)]
Trim code
Patrick Plitzner [Mon, 24 Aug 2015 17:43:49 +0000 (19:43 +0200)]
Remove equal width from columns
b.stoever [Mon, 24 Aug 2015 16:57:35 +0000 (16:57 +0000)]
Test implementation of Copy action added to AlignmentEditor.
Patrick Plitzner [Mon, 24 Aug 2015 11:02:50 +0000 (13:02 +0200)]
Externalize strings
Patrick Plitzner [Mon, 24 Aug 2015 09:11:08 +0000 (11:11 +0200)]
Warn user that URL will not be saved in bold and red (#5065, #5141)
Patrick Plitzner [Wed, 19 Aug 2015 15:22:27 +0000 (17:22 +0200)]
Add OS and java info to MessagingUtils stacktrace
Patrick Plitzner [Wed, 19 Aug 2015 15:45:32 +0000 (17:45 +0200)]
Change order parameters in DetailsView for sources (#5133)
Patrick Plitzner [Mon, 24 Aug 2015 08:29:14 +0000 (10:29 +0200)]
Support UUID search in bulk editors (#5103)
Patrick Plitzner [Mon, 24 Aug 2015 05:10:32 +0000 (07:10 +0200)]
Trim code
Patrick Plitzner [Mon, 24 Aug 2015 05:01:43 +0000 (07:01 +0200)]
Remove comments
Patrick Plitzner [Mon, 24 Aug 2015 05:00:42 +0000 (07:00 +0200)]
Handle ampersand correctly in section titles (#5142)
Patrick Plitzner [Mon, 24 Aug 2015 08:35:20 +0000 (10:35 +0200)]
Fix application ID
Cherian Mathew [Fri, 21 Aug 2015 08:15:25 +0000 (10:15 +0200)]
#4717 Correct java exec called for macosx
Cherian Mathew [Fri, 21 Aug 2015 06:46:06 +0000 (08:46 +0200)]
#4717 Correct macosx dir structure
Cherian Mathew [Thu, 20 Aug 2015 16:59:44 +0000 (18:59 +0200)]
#4717 Correct macosx java path
Cherian Mathew [Thu, 20 Aug 2015 16:27:40 +0000 (18:27 +0200)]
#4717 Correct dir relative path to java exec for mac osx
Cherian Mathew [Thu, 20 Aug 2015 15:52:36 +0000 (17:52 +0200)]
#4717 Correct dir for changing permissions
Cherian Mathew [Thu, 20 Aug 2015 15:46:55 +0000 (17:46 +0200)]
#4717 Add seperate product file for jre bundle
U-BGBM\k.luther [Thu, 20 Aug 2015 08:37:27 +0000 (10:37 +0200)]
fix for #5114
U-BGBM\k.luther [Thu, 20 Aug 2015 08:37:27 +0000 (10:37 +0200)]
fix #5153
Patrick Plitzner [Tue, 18 Aug 2015 12:56:14 +0000 (14:56 +0200)]
Merge branch 'develop' into LibrAlign
U-BGBM\k.luther [Tue, 18 Aug 2015 12:45:59 +0000 (14:45 +0200)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into develop
U-BGBM\k.luther [Tue, 18 Aug 2015 12:26:04 +0000 (14:26 +0200)]
small changes for ideas for better drag and drop in taxonnavigator
U-BGBM\k.luther [Tue, 18 Aug 2015 12:09:17 +0000 (14:09 +0200)]
white spaces
Cherian Mathew [Tue, 18 Aug 2015 11:47:22 +0000 (13:47 +0200)]
Correct config for molecular plugin
U-BGBM\k.luther [Tue, 18 Aug 2015 11:40:45 +0000 (13:40 +0200)]
changes for move descriptions and description elements
k.luther [Tue, 18 Aug 2015 11:35:40 +0000 (13:35 +0200)]
minor
Patrick Plitzner [Tue, 18 Aug 2015 05:51:57 +0000 (07:51 +0200)]
Remove comments
Patrick Plitzner [Mon, 17 Aug 2015 12:56:21 +0000 (14:56 +0200)]
Rename Derivative View to Derivative Editor
b.stoever [Mon, 17 Aug 2015 10:59:08 +0000 (10:59 +0000)]
Minor changes.
b.stoever [Mon, 17 Aug 2015 10:56:22 +0000 (10:56 +0000)]
Fixed NPE when loading single reads without attached pherogram.
Patric Plitzner [Mon, 17 Aug 2015 10:52:38 +0000 (10:52 +0000)]
test commit
Patrick Plitzner [Mon, 17 Aug 2015 08:38:58 +0000 (10:38 +0200)]
Added missing molecular plugin projects
Patrick Plitzner [Mon, 17 Aug 2015 08:19:27 +0000 (10:19 +0200)]
white space changes
Patric Plitzner [Mon, 17 Aug 2015 07:38:29 +0000 (07:38 +0000)]
Renamed branch
k.luther [Thu, 13 Aug 2015 12:13:04 +0000 (14:13 +0200)]
minor
k.luther [Thu, 13 Aug 2015 12:12:15 +0000 (14:12 +0200)]
minor
k.luther [Thu, 13 Aug 2015 12:09:31 +0000 (14:09 +0200)]
fix jenkins
k.luther [Thu, 13 Aug 2015 11:58:56 +0000 (13:58 +0200)]
fix jenkins
U-BGBM\k.luther [Thu, 13 Aug 2015 11:31:46 +0000 (13:31 +0200)]
fix #2480
U-BGBM\k.luther [Thu, 13 Aug 2015 11:29:14 +0000 (13:29 +0200)]
minor
Katja Luther [Thu, 13 Aug 2015 11:20:56 +0000 (13:20 +0200)]
fix delete polytomouskeynode and improve merge in bulk editor
Patrick Plitzner [Tue, 11 Aug 2015 08:31:35 +0000 (10:31 +0200)]
Revert last change
Patrick Plitzner [Tue, 11 Aug 2015 07:43:20 +0000 (09:43 +0200)]
Fix dependencies for LibrALign
- added swt packages to imported packages
Patrick Plitzner [Tue, 11 Aug 2015 06:41:29 +0000 (08:41 +0200)]
Depenedency management
- added javax.swing and org.eclipse swt to dependencies
Patrick Plitzner [Tue, 11 Aug 2015 05:02:42 +0000 (07:02 +0200)]
Remove unused folder
Patrick Plitzner [Mon, 10 Aug 2015 15:17:18 +0000 (17:17 +0200)]
some layout changes
Andreas Müller [Fri, 24 Jul 2015 13:25:46 +0000 (15:25 +0200)]
Fix compile error in FeaturDistributionDetailElement
Cherian Mathew [Wed, 22 Jul 2015 14:23:41 +0000 (16:23 +0200)]
#5061 Add force refresh of p2 repositories before checking for updates
Patrick Plitzner [Wed, 22 Jul 2015 14:03:18 +0000 (16:03 +0200)]
Add button to open URLs in external browser (#5062)
Patrick Plitzner [Wed, 22 Jul 2015 09:44:55 +0000 (11:44 +0200)]
Rename aggregator to lib
Patrick Plitzner [Wed, 22 Jul 2015 09:13:06 +0000 (11:13 +0200)]
Add lib folder to dependency plugin
Cherian Mathew [Wed, 22 Jul 2015 08:45:00 +0000 (10:45 +0200)]
Add missing properties file
Cherian Mathew [Wed, 22 Jul 2015 08:27:46 +0000 (10:27 +0200)]
Integrate molecular plugins
Patrick Plitzner [Tue, 21 Jul 2015 11:33:31 +0000 (13:33 +0200)]
Merge branch 'LibrAlign' into develop
Patrick Plitzner [Mon, 20 Jul 2015 18:16:59 +0000 (20:16 +0200)]
Enhance handling of simple and advanced media view
- Buffer URI string in case of parsing errors
- disable toggling when media conists of more than one representation
or part
Patrick Plitzner [Mon, 20 Jul 2015 16:34:06 +0000 (18:34 +0200)]
Change color when error occurs
Patrick Plitzner [Tue, 21 Jul 2015 08:54:16 +0000 (10:54 +0200)]
Disable Termeditor menu if CdmStore is disconnected
Patrick Plitzner [Tue, 21 Jul 2015 06:55:52 +0000 (08:55 +0200)]
Add missing null check
Patrick Plitzner [Tue, 21 Jul 2015 06:55:27 +0000 (08:55 +0200)]
Remove cdmViewer extension usage
Patrick Plitzner [Tue, 21 Jul 2015 06:54:31 +0000 (08:54 +0200)]
Add @Override
Patrick Plitzner [Tue, 21 Jul 2015 06:54:17 +0000 (08:54 +0200)]
Set Visibility according to CdmStore connection
Patrick Plitzner [Mon, 20 Jul 2015 16:31:02 +0000 (18:31 +0200)]
Generalize cdmViewer extension point
Refactored parameters to be based on commands.
b.stoever [Tue, 21 Jul 2015 10:25:51 +0000 (10:25 +0000)]
Fixed NPE when saving an alignment with a read without attached pherogram.
Patrick Plitzner [Mon, 20 Jul 2015 18:16:59 +0000 (20:16 +0200)]
Enhance handling of simple and advanced media view
- Buffer URI string in case of parsing errors
- disable toggling when media conists of more than one representation
or part
Patrick Plitzner [Mon, 20 Jul 2015 16:34:06 +0000 (18:34 +0200)]
Change color when error occurs
Patrick Plitzner [Tue, 21 Jul 2015 08:54:16 +0000 (10:54 +0200)]
Disable Termeditor menu if CdmStore is disconnected
Patrick Plitzner [Tue, 21 Jul 2015 06:55:52 +0000 (08:55 +0200)]
Add missing null check
Patrick Plitzner [Tue, 21 Jul 2015 06:55:27 +0000 (08:55 +0200)]
Remove cdmViewer extension usage
Patrick Plitzner [Tue, 21 Jul 2015 06:54:31 +0000 (08:54 +0200)]
Add @Override
Patrick Plitzner [Tue, 21 Jul 2015 06:54:17 +0000 (08:54 +0200)]
Set Visibility according to CdmStore connection
Patrick Plitzner [Mon, 20 Jul 2015 16:31:02 +0000 (18:31 +0200)]
Generalize cdmViewer extension point
Refactored parameters to be based on commands.
Patric Plitzner [Mon, 20 Jul 2015 11:18:00 +0000 (11:18 +0000)]
merge-update from trunk
Cherian Mathew [Mon, 20 Jul 2015 09:50:24 +0000 (11:50 +0200)]
Add unimplemented methods to transient service
Patric Plitzner [Mon, 20 Jul 2015 09:14:11 +0000 (09:14 +0000)]
Updated version due to trunk merge
Patric Plitzner [Mon, 20 Jul 2015 08:57:42 +0000 (08:57 +0000)]
merge-update from trunk
Cherian Mathew [Fri, 17 Jul 2015 16:11:28 +0000 (18:11 +0200)]
Update transient service to be compatible with cdmlib service
jenkins [Fri, 17 Jul 2015 10:07:54 +0000 (12:07 +0200)]
Updated version in pom / project files to taxeditor version : 3.8.0-SNAPSHOT and cdmlib version : 3.8.0-SNAPSHOT
jenkins [Fri, 17 Jul 2015 10:06:40 +0000 (12:06 +0200)]
Updating develop poms back to pre merge state
jenkins [Fri, 17 Jul 2015 10:06:40 +0000 (12:06 +0200)]
Merge branch 'master' into develop
jenkins [Fri, 17 Jul 2015 10:06:40 +0000 (12:06 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Fri, 17 Jul 2015 10:06:37 +0000 (12:06 +0200)]
Merge branch 'release/3.7.0'
jenkins [Fri, 17 Jul 2015 10:03:39 +0000 (12:03 +0200)]
updating poms for branch'release/3.7.0' with non-snapshot versions
jenkins [Fri, 17 Jul 2015 10:02:39 +0000 (12:02 +0200)]
Revert project versions to 3.7.0-SNAPSHOT