version="0.0.0"
unpack="false"/>
+ <plugin
+ id="eu.etaxonomy.taxeditor.molecular.aggregator"
+ download-size="0"
+ install-size="0"
+ version="0.0.0"
+ unpack="false"/>
+
</feature>
--- /dev/null
+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+ <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
+ <classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
+ <classpathentry exported="true" kind="lib" path="lib/bioinfweb-commons-bio-2-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/bioinfweb-commons-core-2-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/bioinfweb-commons-swing-2-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/bioinfweb-commons-swt-2-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/core-1.9.2-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/libralign-biojava1-0-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/libralign-core-0-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/libralign-swt-0-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/sequencing-1.9.2-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/tic-core-2-SNAPSHOT.jar"/>
+ <classpathentry exported="true" kind="lib" path="lib/tic-swt-2-SNAPSHOT.jar"/>
+ <classpathentry kind="output" path="target/classes"/>
+</classpath>
--- /dev/null
+/target
+.settings/
<?xml version="1.0" encoding="UTF-8"?>
<projectDescription>
<name>eu.etaxonomy.taxeditor.molecular.aggregator</name>
- <comment></comment>
+ <comment>The Taxonomic Editor for EDIT's platform for
+ cybertaxonomy. NO_M2ECLIPSE_SUPPORT: Project files created with the maven-eclipse-plugin are not supported in M2Eclipse.</comment>
<projects>
</projects>
<buildSpec>
+ <buildCommand>
+ <name>org.eclipse.pde.ManifestBuilder</name>
+ <arguments>
+ </arguments>
+ </buildCommand>
+ <buildCommand>
+ <name>org.eclipse.pde.SchemaBuilder</name>
+ <arguments>
+ </arguments>
+ </buildCommand>
+ <buildCommand>
+ <name>org.eclipse.jdt.core.javabuilder</name>
+ <arguments>
+ </arguments>
+ </buildCommand>
</buildSpec>
<natures>
+ <nature>org.eclipse.pde.PluginNature</nature>
+ <nature>org.eclipse.jdt.core.javanature</nature>
</natures>
</projectDescription>
--- /dev/null
+Manifest-Version: 1.0
+Bundle-ManifestVersion: 2
+Bundle-Name: eu.etaxonomy.taxeditor.molecular.aggregator
+Bundle-SymbolicName: eu.etaxonomy.taxeditor.molecular.aggregator;singleton:=true
+Bundle-Version: 3.8.0.qualifier
+Bundle-ClassPath: .,
+ lib/bioinfweb-commons-bio-2-SNAPSHOT.jar,
+ lib/bioinfweb-commons-core-2-SNAPSHOT.jar,
+ lib/bioinfweb-commons-swing-2-SNAPSHOT.jar,
+ lib/bioinfweb-commons-swt-2-SNAPSHOT.jar,
+ lib/core-1.9.2-SNAPSHOT.jar,
+ lib/libralign-biojava1-0-SNAPSHOT.jar,
+ lib/libralign-core-0-SNAPSHOT.jar,
+ lib/libralign-swt-0-SNAPSHOT.jar,
+ lib/sequencing-1.9.2-SNAPSHOT.jar,
+ lib/tic-core-2-SNAPSHOT.jar,
+ lib/tic-swt-2-SNAPSHOT.jar
+Export-Package: info.bioinfweb.commons.collections,
+ info.bioinfweb.libralign.alignmentarea,
+ info.bioinfweb.libralign.alignmentarea.order,
+ info.bioinfweb.libralign.alignmentarea.paintsettings,
+ info.bioinfweb.libralign.alignmentarea.selection,
+ info.bioinfweb.libralign.alignmentarea.tokenpainter,
+ info.bioinfweb.libralign.dataarea,
+ info.bioinfweb.libralign.dataarea.implementations,
+ info.bioinfweb.libralign.dataarea.implementations.pherogram,
+ info.bioinfweb.libralign.editsettings,
+ info.bioinfweb.libralign.model,
+ info.bioinfweb.libralign.model.adapters,
+ info.bioinfweb.libralign.model.events,
+ info.bioinfweb.libralign.model.implementations,
+ info.bioinfweb.libralign.model.tokenset,
+ info.bioinfweb.libralign.multiplealignments,
+ info.bioinfweb.libralign.pherogram,
+ info.bioinfweb.libralign.pherogram.model,
+ info.bioinfweb.libralign.pherogram.provider,
+ info.bioinfweb.libralign.pherogram.view,
+ info.bioinfweb.tic,
+ info.bioinfweb.tic.input,
+ org.biojava.bio.chromatogram
+Bundle-ActivationPolicy: lazy
<project>
<modelVersion>4.0.0</modelVersion>
<groupId>eu.etaxonomy.taxeditor</groupId>
- <artifactId>eu.etaxonomy.taxeditor.aggregator</artifactId>
- <packaging>pom</packaging>
+ <artifactId>eu.etaxonomy.taxeditor.molecular.aggregator</artifactId>
+ <packaging>eclipse-plugin</packaging>
<parent>
<groupId>eu.etaxonomy</groupId>
<version>3.8.0-SNAPSHOT</version>
</parent>
- <modules>
- <module>../eu.etaxonomy.taxeditor.cdmlib</module>
- <module>../eu.etaxonomy.taxeditor.store</module>
- <module>../eu.etaxonomy.taxeditor.bulkeditor</module>
- <module>../eu.etaxonomy.taxeditor.editor</module>
- <module>../eu.etaxonomy.taxeditor.molecular</module>
- </modules>
+ <build>
+ <plugins>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-dependency-plugin</artifactId>
+ <version>2.4</version>
+ <executions>
+ <execution>
+ <id>copy-dependencies</id>
+ <phase>validate</phase>
+ <goals>
+ <goal>copy-dependencies</goal>
+ </goals>
+ <configuration>
+ <includeArtifactIds>libralign-swt, libralign-core,
+ bioinfweb-commons-swt, bioinfweb-commons-core,
+ bioinfweb-commons-bio, bioinfweb-commons-swing,
+ tic-core, libralign-biojava1, core, sequencing, tic-swt</includeArtifactIds>
+ <outputDirectory>lib</outputDirectory>
+ <overWriteReleases>true</overWriteReleases>
+ <overWriteSnapshots>true</overWriteSnapshots>
+ <excludeTransitive>true</excludeTransitive>
+ </configuration>
+ </execution>
+ <!-- <execution> -->
+ <!-- <id>copy-dependencies-sources</id> -->
+ <!-- <phase>validate</phase> -->
+ <!-- <goals> -->
+ <!-- <goal>copy-dependencies</goal> -->
+ <!-- </goals> -->
+ <!-- <configuration> -->
+ <!-- <classifier>sources</classifier> -->
+ <!-- <includeArtifactIds>cdmlib-commons,cdmlib-model,cdmlib-persistence,cdmlib-remote,cdmlib-print,cdmlib-services,cdmlib-ext,cdmlib-io</includeArtifactIds> -->
+ <!-- <outputDirectory>lib</outputDirectory> -->
+ <!-- <overWriteReleases>true</overWriteReleases> -->
+ <!-- <overWriteSnapshots>true</overWriteSnapshots> -->
+ <!-- <excludeTransitive>true</excludeTransitive> -->
+ <!-- <failOnMissingClassifierArtifact>false</failOnMissingClassifierArtifact> -->
+ <!-- </configuration> -->
+ <!-- </execution> -->
+ </executions>
+ </plugin>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-antrun-plugin</artifactId>
+ <version>1.7</version>
+ <executions>
+ <execution>
+ <id>remove-existing-jars</id>
+ <phase>clean</phase>
+ <goals>
+ <goal>run</goal>
+ </goals>
+ <configuration>
+ <target>
+ <echo>Remove all jars</echo>
+ <delete>
+ <fileset dir="./lib" includes="*" />
+ </delete>
+ </target>
+ </configuration>
+ </execution>
+ <execution>
+ <id>update-snapshot-jar-names</id>
+ <phase>validate</phase>
+ <goals>
+ <goal>run</goal>
+ </goals>
+ <configuration>
+ <target>
+ <echo>Update jars to SNAPSHOT when build with
+ timestamp</echo>
+ <move todir="./lib">
+ <fileset dir="./lib" />
+ <mapper type="regexp"
+ from="(^bioinfweb\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
+ </move>
+ <move todir="./lib">
+ <fileset dir="./lib" />
+ <mapper type="regexp"
+ from="(^libralign\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
+ </move>
+ <move todir="./lib">
+ <fileset dir="./lib" />
+ <mapper type="regexp"
+ from="(^tic\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
+ </move>
+ <move todir="./lib">
+ <fileset dir="./lib" />
+ <mapper type="regexp"
+ from="(^core\-[0-9]\.[0-9]\.[0-9])(\.jar)" to="\1-SNAPSHOT\2" />
+ </move>
+ <move todir="./lib">
+ <fileset dir="./lib" />
+ <mapper type="regexp"
+ from="(^sequencing\-[0-9]\.[0-9]\.[0-9])(\.jar)" to="\1-SNAPSHOT\2" />
+ </move>
+ </target>
+ </configuration>
+ </execution>
+ </executions>
+ </plugin>
+ </plugins>
+ </build>
+
+ <dependencies>
+ <!-- LibrAling -->
+ <dependency>
+ <groupId>info.bioinfweb.libralign</groupId>
+ <artifactId>libralign-core</artifactId>
+ <version>0-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>info.bioinfweb.libralign</groupId>
+ <artifactId>libralign-swt</artifactId>
+ <version>0-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>info.bioinfweb.libralign</groupId>
+ <artifactId>libralign-biojava1</artifactId>
+ <version>0-SNAPSHOT</version>
+ </dependency>
+ <!-- commons -->
+ <dependency>
+ <groupId>info.bioinfweb.commons.java</groupId>
+ <artifactId>bioinfweb-commons-swt</artifactId>
+ <version>2-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>info.bioinfweb.commons.java</groupId>
+ <artifactId>bioinfweb-commons-core</artifactId>
+ <version>2-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>info.bioinfweb.commons.java</groupId>
+ <artifactId>bioinfweb-commons-bio</artifactId>
+ <version>2-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>info.bioinfweb.commons.java</groupId>
+ <artifactId>bioinfweb-commons-swing</artifactId>
+ <version>2-SNAPSHOT</version>
+ </dependency>
+ <!-- tic -->
+ <dependency>
+ <groupId>info.bioinfweb.tic</groupId>
+ <artifactId>tic-core</artifactId>
+ <version>2-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>info.bioinfweb.tic</groupId>
+ <artifactId>tic-swt</artifactId>
+ <version>2-SNAPSHOT</version>
+ </dependency>
+ <!-- biojava -->
+ <dependency>
+ <groupId>org.biojava</groupId>
+ <artifactId>core</artifactId>
+ <version>1.9.2</version>
+ </dependency>
+ <dependency>
+ <groupId>org.biojava</groupId>
+ <artifactId>sequencing</artifactId>
+ <version>1.9.2</version>
+ </dependency>
+ </dependencies>
+
+ <repositories>
+ <repository>
+ <id>bioinfweb-maven-repo</id>
+ <name>bioinfweb repository</name>
+ <url>http://bioinfweb.info/MavenRepository/</url>
+ </repository>
+ </repositories>
</project>
<?xml version="1.0" encoding="UTF-8"?>
<classpath>
- <classpathentry exported="true" kind="lib" path="lib/bioinfweb-commons-bio-2-SNAPSHOT.jar"/>
- <classpathentry exported="true" kind="lib" path="lib/bioinfweb-commons-core-2-SNAPSHOT.jar"/>
- <classpathentry exported="true" kind="lib" path="lib/bioinfweb-commons-swing-2-SNAPSHOT.jar"/>
- <classpathentry exported="true" kind="lib" path="lib/bioinfweb-commons-swt-2-SNAPSHOT.jar"/>
- <classpathentry exported="true" kind="lib" path="lib/core-1.9.2-SNAPSHOT.jar"/>
- <classpathentry exported="true" kind="lib" path="lib/libralign-biojava1-0-SNAPSHOT.jar"/>
- <classpathentry exported="true" kind="lib" path="lib/libralign-core-0-SNAPSHOT.jar"/>
- <classpathentry exported="true" kind="lib" path="lib/libralign-swt-0-SNAPSHOT.jar"/>
- <classpathentry exported="true" kind="lib" path="lib/sequencing-1.9.2-SNAPSHOT.jar"/>
- <classpathentry exported="true" kind="lib" path="lib/tic-core-2-SNAPSHOT.jar"/>
- <classpathentry exported="true" kind="lib" path="lib/tic-swt-2-SNAPSHOT.jar"/>
- <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
+ <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6"/>
<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
<classpathentry including="**/*.java" kind="src" path="src/main/java"/>
<classpathentry kind="output" path="target/classes"/>
-/target/
+/target
+.settings/
org.eclipse.core.runtime,
org.eclipse.core.expressions,
org.eclipse.ui.ide,
- eu.etaxonomy.taxeditor.bulkeditor;bundle-version="3.6.1",
- eu.etaxonomy.taxeditor.cdmlib;bundle-version="3.6.1",
- eu.etaxonomy.taxeditor.editor;bundle-version="3.6.1",
- eu.etaxonomy.taxeditor.store;bundle-version="3.6.1"
+ eu.etaxonomy.taxeditor.bulkeditor,
+ eu.etaxonomy.taxeditor.cdmlib,
+ eu.etaxonomy.taxeditor.editor,
+ eu.etaxonomy.taxeditor.store,
+ eu.etaxonomy.taxeditor.molecular.aggregator
Bundle-RequiredExecutionEnvironment: JavaSE-1.6
Bundle-ActivationPolicy: lazy
Bundle-Vendor: EDIT
-Bundle-ClassPath: .,
- lib/bioinfweb-commons-bio-2-SNAPSHOT.jar,
- lib/bioinfweb-commons-core-2-SNAPSHOT.jar,
- lib/bioinfweb-commons-swing-2-SNAPSHOT.jar,
- lib/bioinfweb-commons-swt-2-SNAPSHOT.jar,
- lib/core-1.9.2-SNAPSHOT.jar,
- lib/libralign-biojava1-0-SNAPSHOT.jar,
- lib/libralign-core-0-SNAPSHOT.jar,
- lib/libralign-swt-0-SNAPSHOT.jar,
- lib/sequencing-1.9.2-SNAPSHOT.jar,
- lib/tic-core-2-SNAPSHOT.jar,
- lib/tic-swt-2-SNAPSHOT.jar
-Export-Package: eu.etaxonomy.taxeditor.molecular,
- eu.etaxonomy.taxeditor.molecular.editor,
- eu.etaxonomy.taxeditor.molecular.handler,
- info.bioinfweb.commons
-source.. = src/main/java/
bin.includes = META-INF/,\
- .,\
plugin.xml,\
icons/,\
- OSGI-INF/,\
- lib/bioinfweb-commons-bio-2-SNAPSHOT.jar,\
- lib/bioinfweb-commons-core-2-SNAPSHOT.jar,\
- lib/bioinfweb-commons-swing-2-SNAPSHOT.jar,\
- lib/bioinfweb-commons-swt-2-SNAPSHOT.jar,\
- lib/core-1.9.2-SNAPSHOT.jar,\
- lib/libralign-biojava1-0-SNAPSHOT.jar,\
- lib/libralign-core-0-SNAPSHOT.jar,\
- lib/libralign-swt-0-SNAPSHOT.jar,\
- lib/sequencing-1.9.2-SNAPSHOT.jar,\
- lib/tic-core-2-SNAPSHOT.jar,\
- lib/tic-swt-2-SNAPSHOT.jar
+ OSGI-INF/
<name>Molecular Bundle</name>
<description>Provides editors, views and operations for handling molecular data and alignments</description>
- <build>
- <plugins>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-dependency-plugin</artifactId>
- <version>2.4</version>
- <executions>
- <execution>
- <id>copy-dependencies</id>
- <phase>validate</phase>
- <goals>
- <goal>copy-dependencies</goal>
- </goals>
- <configuration>
- <includeArtifactIds>libralign-swt, libralign-core,
- bioinfweb-commons-swt, bioinfweb-commons-core,
- bioinfweb-commons-bio, bioinfweb-commons-swing,
- tic-core, libralign-biojava1, core, sequencing, tic-swt</includeArtifactIds>
- <outputDirectory>lib</outputDirectory>
- <overWriteReleases>true</overWriteReleases>
- <overWriteSnapshots>true</overWriteSnapshots>
- <excludeTransitive>true</excludeTransitive>
- </configuration>
- </execution>
- <!-- <execution> -->
- <!-- <id>copy-dependencies-sources</id> -->
- <!-- <phase>validate</phase> -->
- <!-- <goals> -->
- <!-- <goal>copy-dependencies</goal> -->
- <!-- </goals> -->
- <!-- <configuration> -->
- <!-- <classifier>sources</classifier> -->
- <!-- <includeArtifactIds>cdmlib-commons,cdmlib-model,cdmlib-persistence,cdmlib-remote,cdmlib-print,cdmlib-services,cdmlib-ext,cdmlib-io</includeArtifactIds> -->
- <!-- <outputDirectory>lib</outputDirectory> -->
- <!-- <overWriteReleases>true</overWriteReleases> -->
- <!-- <overWriteSnapshots>true</overWriteSnapshots> -->
- <!-- <excludeTransitive>true</excludeTransitive> -->
- <!-- <failOnMissingClassifierArtifact>false</failOnMissingClassifierArtifact> -->
- <!-- </configuration> -->
- <!-- </execution> -->
- </executions>
- </plugin>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-antrun-plugin</artifactId>
- <version>1.7</version>
- <executions>
- <execution>
- <id>remove-existing-jars</id>
- <phase>clean</phase>
- <goals>
- <goal>run</goal>
- </goals>
- <configuration>
- <target>
- <echo>Remove all jars</echo>
- <delete>
- <fileset dir="./lib" includes="*" />
- </delete>
- </target>
- </configuration>
- </execution>
- <execution>
- <id>update-snapshot-jar-names</id>
- <phase>validate</phase>
- <goals>
- <goal>run</goal>
- </goals>
- <configuration>
- <target>
- <echo>Update jars to SNAPSHOT when build with
- timestamp</echo>
- <move todir="./lib">
- <fileset dir="./lib" />
- <mapper type="regexp"
- from="(^bioinfweb\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
- </move>
- <move todir="./lib">
- <fileset dir="./lib" />
- <mapper type="regexp"
- from="(^libralign\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
- </move>
- <move todir="./lib">
- <fileset dir="./lib" />
- <mapper type="regexp"
- from="(^tic\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
- </move>
- <move todir="./lib">
- <fileset dir="./lib" />
- <mapper type="regexp"
- from="(^core\-[0-9]\.[0-9]\.[0-9])(\.jar)" to="\1-SNAPSHOT\2" />
- </move>
- <move todir="./lib">
- <fileset dir="./lib" />
- <mapper type="regexp"
- from="(^sequencing\-[0-9]\.[0-9]\.[0-9])(\.jar)" to="\1-SNAPSHOT\2" />
- </move>
- </target>
- </configuration>
- </execution>
- </executions>
- </plugin>
- </plugins>
- </build>
-
- <dependencies>
- <!-- LibrAling -->
- <dependency>
- <groupId>info.bioinfweb.libralign</groupId>
- <artifactId>libralign-core</artifactId>
- <version>0-SNAPSHOT</version>
- </dependency>
- <dependency>
- <groupId>info.bioinfweb.libralign</groupId>
- <artifactId>libralign-swt</artifactId>
- <version>0-SNAPSHOT</version>
- </dependency>
- <dependency>
- <groupId>info.bioinfweb.libralign</groupId>
- <artifactId>libralign-biojava1</artifactId>
- <version>0-SNAPSHOT</version>
- </dependency>
- <!-- commons -->
- <dependency>
- <groupId>info.bioinfweb.commons.java</groupId>
- <artifactId>bioinfweb-commons-swt</artifactId>
- <version>2-SNAPSHOT</version>
- </dependency>
- <dependency>
- <groupId>info.bioinfweb.commons.java</groupId>
- <artifactId>bioinfweb-commons-core</artifactId>
- <version>2-SNAPSHOT</version>
- </dependency>
- <dependency>
- <groupId>info.bioinfweb.commons.java</groupId>
- <artifactId>bioinfweb-commons-bio</artifactId>
- <version>2-SNAPSHOT</version>
- </dependency>
- <dependency>
- <groupId>info.bioinfweb.commons.java</groupId>
- <artifactId>bioinfweb-commons-swing</artifactId>
- <version>2-SNAPSHOT</version>
- </dependency>
- <!-- tic -->
- <dependency>
- <groupId>info.bioinfweb.tic</groupId>
- <artifactId>tic-core</artifactId>
- <version>2-SNAPSHOT</version>
- </dependency>
- <dependency>
- <groupId>info.bioinfweb.tic</groupId>
- <artifactId>tic-swt</artifactId>
- <version>2-SNAPSHOT</version>
- </dependency>
- <!-- biojava -->
- <dependency>
- <groupId>org.biojava</groupId>
- <artifactId>core</artifactId>
- <version>1.9.2</version>
- </dependency>
- <dependency>
- <groupId>org.biojava</groupId>
- <artifactId>sequencing</artifactId>
- <version>1.9.2</version>
- </dependency>
- </dependencies>
-
- <repositories>
- <repository>
- <id>bioinfweb-maven-repo</id>
- <name>bioinfweb repository</name>
- <url>http://bioinfweb.info/MavenRepository/</url>
- </repository>
- </repositories>
-
</project>
<module>eu.etaxonomy.taxeditor.application</module>
<module>eu.etaxonomy.taxeditor.feature.platform</module>
<module>eu.etaxonomy.taxeditor.feature</module>
+ <module>eu.etaxonomy.taxeditor.molecular</module>
+ <module>eu.etaxonomy.taxeditor.molecular.aggregator</module>
<module>eu.etaxonomy.taxeditor</module>
</modules>
<scm>