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Revision 9b52adf5

Added by Andreas Kohlbecker over 7 years ago

solving #17 and preparing #16 \n - #17 hide the empty higherClassification property from the taxon object serialization\n - #16 optional inclusion of the parentTaxon into the search responses

View differences:

src/main/java/org/cybertaxonomy/utis/tnr/msg/AtomisedName.java
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// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
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      src/main/java/org/cybertaxonomy/utis/tnr/msg/HigherClassificationElement.java
    
  





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      src/main/java/org/cybertaxonomy/utis/tnr/msg/NameType.java
    
  





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      src/main/java/org/cybertaxonomy/utis/tnr/msg/ObjectFactory.java
    
  





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        return new Query();


  		




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    }


  		




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    /**


  		




  
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     * Create an instance of {@link Taxon }


  		




  
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     * 


  		




  
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     */


  		




  
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    public Taxon createTaxon() {


  		




  
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        return new Taxon();


  		




  
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    }


  		




  
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    /**


  		




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     * Create an instance of {@link Response }


  		




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     * 


  		




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        return new Query.Request();


  		




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    }


  		




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    /**


  		




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     * Create an instance of {@link Taxon }


  		




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     * 


  		




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     */


  		




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    public Taxon createTaxon() {


  		




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        return new Taxon();


  		




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    }


  		




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    /**


  		




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     * Create an instance of {@link TaxonBase }


  		




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     * 


  		




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        return new HigherClassificationElement();


  		




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    }


  		




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    /**


  		




  
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     * Create an instance of {@link Taxon.ParentTaxon }


  		




  
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     * 


  		




  
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     */


  		




  
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    public Taxon.ParentTaxon createTaxonParentTaxon() {


  		




  
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        return new Taxon.ParentTaxon();


  		




  
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    }


  		




  
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    /**


  		




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     * Create an instance of {@link Response.OtherNames }


  		




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     * 


  		












  

    
      src/main/java/org/cybertaxonomy/utis/tnr/msg/Query.java
    
  





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//


  		




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 *                   &lt;element name="queryString" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;


  		




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 *                   &lt;element name="searchMode" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;


  		




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 *                   &lt;element name="addSynonymy" type="{http://www.w3.org/2001/XMLSchema}boolean"/&gt;


  		




  
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 *                   &lt;element name="addParentTaxon" type="{http://www.w3.org/2001/XMLSchema}boolean"/&gt;


  		




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 *                 &lt;/sequence&gt;


  		




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 *             &lt;/complexContent&gt;


  		




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     *         &lt;element name="queryString" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;


  		




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     *         &lt;element name="searchMode" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;


  		




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     *         &lt;element name="addSynonymy" type="{http://www.w3.org/2001/XMLSchema}boolean"/&gt;


  		




  
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     *         &lt;element name="addParentTaxon" type="{http://www.w3.org/2001/XMLSchema}boolean"/&gt;


  		




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     *       &lt;/sequence&gt;


  		




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     *     &lt;/restriction&gt;


  		




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     *   &lt;/complexContent&gt;


  		




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    @XmlType(name = "", propOrder = {


  		




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        "queryString",


  		




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        "searchMode",


  		




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        "addSynonymy"


  		




  
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        "addSynonymy",


  		




  
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        "addParentTaxon"


  		




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    })


  		




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    public static class Request {


  		




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        @XmlElement(required = true)


  		




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        protected String searchMode;


  		




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        protected boolean addSynonymy;


  		




  
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        protected boolean addParentTaxon;


  		




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        /**


  		




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         * Gets the value of the queryString property.


  		




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         *     {@link String }


  		




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         *     


  		




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         */


  		




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        @ApiModelProperty("Specified the search mode to be usedPossible search modes are: scientificNameExact, scientificNameLike (begins with), vernacularNameExact, vernacularNameLike (contains).")


  		




  
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        @ApiModelProperty("Specified the search mode to be used. Possible search modes are: scientificNameExact, scientificNameLike (begins with), vernacularNameExact, vernacularNameLike (contains), findByIdentifier, taxonomicChildren.")


  		




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        public String getSearchMode() {


  		




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            return searchMode;


  		




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        }


  		




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            this.addSynonymy = value;


  		




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        }


  		




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        /**


  		




  
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         * Gets the value of the addParentTaxon property.


  		




  
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         * 


  		




  
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         */


  		




  
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        @ApiModelProperty("Indicates whether the direct higher taxon of the accepted taxon should be included into the response. Turning this option on may lead to an slight increase of the response time.")


  		




  
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        public boolean isAddParentTaxon() {


  		




  
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            return addParentTaxon;


  		




  
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        }


  		




  
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        /**


  		




  
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         * Sets the value of the addParentTaxon property.


  		




  
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         * 


  		




  
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         */


  		




  
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        public void setAddParentTaxon(boolean value) {


  		




  
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            this.addParentTaxon = value;


  		




  
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        }


  		




  
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    }


  		




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}


  		












  

    
      src/main/java/org/cybertaxonomy/utis/tnr/msg/Response.java
    
  





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      src/main/java/org/cybertaxonomy/utis/tnr/msg/Source.java
    
  





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      src/main/java/org/cybertaxonomy/utis/tnr/msg/Synonym.java
    
  





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      src/main/java/org/cybertaxonomy/utis/tnr/msg/Taxon.java
    
  





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import java.util.ArrayList;


  		




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import java.util.List;


  		




  
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import javax.xml.bind.annotation.XmlAccessType;


  		




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import javax.xml.bind.annotation.XmlAccessorType;


  		




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import javax.xml.bind.annotation.XmlElement;


  		




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import javax.xml.bind.annotation.XmlRootElement;


  		




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import javax.xml.bind.annotation.XmlType;


  		




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import com.fasterxml.jackson.annotation.JsonInclude;


  		




  
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/**


  		




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 * <p>Java class for anonymous complex type.


  		




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 * 


  		




  
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 *


  		




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 * <p>The following schema fragment specifies the expected content contained within this class.


  		




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 * 


  		




  
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 *


  		




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 * <pre>


  		




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 * &lt;complexType&gt;


  		




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 *   &lt;complexContent&gt;


  		




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 *       &lt;sequence&gt;


  		




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 *         &lt;element name="higherClassification" type="{http://cybertaxonomy.org/utis/tnr/msg}higherClassificationElement" maxOccurs="unbounded" minOccurs="0"/&gt;


  		




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 *         &lt;element name="identifier" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;


  		




  
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 *         &lt;element name="parentTaxon"&gt;


  		




  
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 *           &lt;complexType&gt;


  		




  
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 *             &lt;complexContent&gt;


  		




  
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 *               &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;


  		




  
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 *                 &lt;sequence&gt;


  		




  
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 *                   &lt;element name="scientificName" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;


  		




  
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 *                   &lt;element name="identifier" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;


  		




  
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 *                 &lt;/sequence&gt;


  		




  
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 *               &lt;/restriction&gt;


  		




  
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 *             &lt;/complexContent&gt;


  		




  
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 *           &lt;/complexType&gt;


  		




  
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 *         &lt;/element&gt;


  		




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 *       &lt;/sequence&gt;


  		




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 *     &lt;/extension&gt;


  		




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 *   &lt;/complexContent&gt;


  		




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 * &lt;/complexType&gt;


  		




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 * </pre>


  		




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 * 


  		




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 * 


  		




  
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 *


  		




  
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 *


  		




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 */


  		




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@XmlAccessorType(XmlAccessType.FIELD)


  		




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@XmlType(name = "", propOrder = {


  		




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    "higherClassification",


  		




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    "identifier"


  		




  
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    "identifier",


  		




  
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    "parentTaxon"


  		




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})


  		




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@XmlRootElement(name = "taxon")


  		




  
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@JsonInclude(JsonInclude.Include.NON_EMPTY)


  		




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public class Taxon


  		




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    extends TaxonBase


  		




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{


  		




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    protected List<HigherClassificationElement> higherClassification;


  		




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    @XmlElement(required = true)


  		




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    protected String identifier;


  		




  
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    @XmlElement(required = true)


  		




  
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    protected Taxon.ParentTaxon parentTaxon;


  		




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    /**


  		




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     * Gets the value of the higherClassification property.


  		




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     * 


  		




  
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     *


  		




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     * <p>


  		




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     * This accessor method returns a reference to the live list,


  		




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     * not a snapshot. Therefore any modification you make to the


  		




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     * returned list will be present inside the JAXB object.


  		




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     * This is why there is not a <CODE>set</CODE> method for the higherClassification property.


  		




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     * 


  		




  
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     *


  		




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     * <p>


  		




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     * For example, to add a new item, do as follows:


  		




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     * <pre>


  		




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     *    getHigherClassification().add(newItem);


  		




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     * </pre>


  		




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     * 


  		




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     * 


  		




  
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     *


  		




  
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     *


  		




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     * <p>


  		




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     * Objects of the following type(s) are allowed in the list


  		




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     * {@link HigherClassificationElement }


  		




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     * 


  		




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     * 


  		




  
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     *


  		




  
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     *


  		




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     */


  		




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    public List<HigherClassificationElement> getHigherClassification() {


  		




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        if (higherClassification == null) {


  		




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    /**


  		




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     * Gets the value of the identifier property.


  		




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     * 


  		




  
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     *


  		




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     * @return


  		




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     *     possible object is


  		




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     *     {@link String }


  		




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     *     


  		




  
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     *


  		




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     */


  		




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    public String getIdentifier() {


  		




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        return identifier;


  		




  ......




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    /**


  		




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     * Sets the value of the identifier property.


  		




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     * 


  		




  
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     *


  		




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     * @param value


  		




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     *     allowed object is


  		




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     *     {@link String }


  		




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     *     


  		




  
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     *


  		




  102
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     */


  		




  103
  122
  
    
    public void setIdentifier(String value) {


  		




  104
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        this.identifier = value;


  		




  105
  124
  
    
    }


  		




  106
  125
  
    

  		




  
  126
  
    
    /**


  		




  
  127
  
    
     * Gets the value of the parentTaxon property.


  		




  
  128
  
    
     *


  		




  
  129
  
    
     * @return


  		




  
  130
  
    
     *     possible object is


  		




  
  131
  
    
     *     {@link Taxon.ParentTaxon }


  		




  
  132
  
    
     *


  		




  
  133
  
    
     */


  		




  
  134
  
    
    public Taxon.ParentTaxon getParentTaxon() {


  		




  
  135
  
    
        return parentTaxon;


  		




  
  136
  
    
    }


  		




  
  137
  
    

  		




  
  138
  
    
    /**


  		




  
  139
  
    
     * Sets the value of the parentTaxon property.


  		




  
  140
  
    
     *


  		




  
  141
  
    
     * @param value


  		




  
  142
  
    
     *     allowed object is


  		




  
  143
  
    
     *     {@link Taxon.ParentTaxon }


  		




  
  144
  
    
     *


  		




  
  145
  
    
     */


  		




  
  146
  
    
    public void setParentTaxon(Taxon.ParentTaxon value) {


  		




  
  147
  
    
        this.parentTaxon = value;


  		




  
  148
  
    
    }


  		




  
  149
  
    

  		




  
  150
  
    

  		




  
  151
  
    
    /**


  		




  
  152
  
    
     * <p>Java class for anonymous complex type.


  		




  
  153
  
    
     *


  		




  
  154
  
    
     * <p>The following schema fragment specifies the expected content contained within this class.


  		




  
  155
  
    
     *


  		




  
  156
  
    
     * <pre>


  		




  
  157
  
    
     * &lt;complexType&gt;


  		




  
  158
  
    
     *   &lt;complexContent&gt;


  		




  
  159
  
    
     *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;


  		




  
  160
  
    
     *       &lt;sequence&gt;


  		




  
  161
  
    
     *         &lt;element name="scientificName" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;


  		




  
  162
  
    
     *         &lt;element name="identifier" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;


  		




  
  163
  
    
     *       &lt;/sequence&gt;


  		




  
  164
  
    
     *     &lt;/restriction&gt;


  		




  
  165
  
    
     *   &lt;/complexContent&gt;


  		




  
  166
  
    
     * &lt;/complexType&gt;


  		




  
  167
  
    
     * </pre>


  		




  
  168
  
    
     *


  		




  
  169
  
    
     *


  		




  
  170
  
    
     */


  		




  
  171
  
    
    @XmlAccessorType(XmlAccessType.FIELD)


  		




  
  172
  
    
    @XmlType(name = "", propOrder = {


  		




  
  173
  
    
        "scientificName",


  		




  
  174
  
    
        "identifier"


  		




  
  175
  
    
    })


  		




  
  176
  
    
    public static class ParentTaxon {


  		




  
  177
  
    

  		




  
  178
  
    
        @XmlElement(required = true)


  		




  
  179
  
    
        protected String scientificName;


  		




  
  180
  
    
        @XmlElement(required = true)


  		




  
  181
  
    
        protected String identifier;


  		




  
  182
  
    

  		




  
  183
  
    
        /**


  		




  
  184
  
    
         * Gets the value of the scientificName property.


  		




  
  185
  
    
         *


  		




  
  186
  
    
         * @return


  		




  
  187
  
    
         *     possible object is


  		




  
  188
  
    
         *     {@link String }


  		




  
  189
  
    
         *


  		




  
  190
  
    
         */


  		




  
  191
  
    
        public String getScientificName() {


  		




  
  192
  
    
            return scientificName;


  		




  
  193
  
    
        }


  		




  
  194
  
    

  		




  
  195
  
    
        /**


  		




  
  196
  
    
         * Sets the value of the scientificName property.


  		




  
  197
  
    
         *


  		




  
  198
  
    
         * @param value


  		




  
  199
  
    
         *     allowed object is


  		




  
  200
  
    
         *     {@link String }


  		




  
  201
  
    
         *


  		




  
  202
  
    
         */


  		




  
  203
  
    
        public void setScientificName(String value) {


  		




  
  204
  
    
            this.scientificName = value;


  		




  
  205
  
    
        }


  		




  
  206
  
    

  		




  
  207
  
    
        /**


  		




  
  208
  
    
         * Gets the value of the identifier property.


  		




  
  209
  
    
         *


  		




  
  210
  
    
         * @return


  		




  
  211
  
    
         *     possible object is


  		




  
  212
  
    
         *     {@link String }


  		




  
  213
  
    
         *


  		




  
  214
  
    
         */


  		




  
  215
  
    
        public String getIdentifier() {


  		




  
  216
  
    
            return identifier;


  		




  
  217
  
    
        }


  		




  
  218
  
    

  		




  
  219
  
    
        /**


  		




  
  220
  
    
         * Sets the value of the identifier property.


  		




  
  221
  
    
         *


  		




  
  222
  
    
         * @param value


  		




  
  223
  
    
         *     allowed object is


  		




  
  224
  
    
         *     {@link String }


  		




  
  225
  
    
         *


  		




  
  226
  
    
         */


  		




  
  227
  
    
        public void setIdentifier(String value) {


  		




  
  228
  
    
            this.identifier = value;


  		




  
  229
  
    
        }


  		




  
  230
  
    

  		




  
  231
  
    
    }


  		




  
  232
  
    

  		




  107
  233
  
    
}


  		












  

    
      src/main/java/org/cybertaxonomy/utis/tnr/msg/TaxonBase.java
    
  





  2
  2
  
    
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.11 


  		




  3
  3
  
    
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 


  		




  4
  4
  
    
// Any modifications to this file will be lost upon recompilation of the source schema. 


  		




  5
  
  
    
// Generated on: 2015.11.02 at 02:20:04 PM CET 


  		




  
  5
  
    
// Generated on: 2016.10.19 at 02:28:29 PM CEST 


  		




  6
  6
  
    
//


  		




  7
  7
  
    

  		




  8
  8
  
    

  		












  

    
      src/main/java/org/cybertaxonomy/utis/tnr/msg/TaxonName.java
    
  





  2
  2
  
    
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.11 


  		




  3
  3
  
    
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 


  		




  4
  4
  
    
// Any modifications to this file will be lost upon recompilation of the source schema. 


  		




  5
  
  
    
// Generated on: 2015.11.02 at 02:20:04 PM CET 


  		




  
  5
  
    
// Generated on: 2016.10.19 at 02:28:29 PM CEST 


  		




  6
  6
  
    
//


  		




  7
  7
  
    

  		




  8
  8
  
    

  		












  

    
      src/main/java/org/cybertaxonomy/utis/tnr/msg/TnrMsg.java
    
  





  2
  2
  
    
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.11 


  		




  3
  3
  
    
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 


  		




  4
  4
  
    
// Any modifications to this file will be lost upon recompilation of the source schema. 


  		




  5
  
  
    
// Generated on: 2015.11.02 at 02:20:04 PM CET 


  		




  
  5
  
    
// Generated on: 2016.10.19 at 02:28:29 PM CEST 


  		




  6
  6
  
    
//


  		




  7
  7
  
    

  		




  8
  8
  
    

  		












  

    
      src/main/java/org/cybertaxonomy/utis/tnr/msg/package-info.java
    
  





  2
  2
  
    
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.11 


  		




  3
  3
  
    
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 


  		




  4
  4
  
    
// Any modifications to this file will be lost upon recompilation of the source schema. 


  		




  5
  
  
    
// Generated on: 2015.11.02 at 02:20:04 PM CET 


  		




  
  5
  
    
// Generated on: 2016.10.19 at 02:28:29 PM CEST 


  		




  6
  6
  
    
//


  		




  7
  7
  
    

  		




  8
  8
  
    
@javax.xml.bind.annotation.XmlSchema(namespace = "http://cybertaxonomy.org/utis/tnr/msg", elementFormDefault = javax.xml.bind.annotation.XmlNsForm.QUALIFIED)


  		












  

    
      src/main/resources/org/cybertaxonomy/utis/tnr/tnrmsg.xsd
    
  





  227
  227
  
    
  </xsd:element>


  		




  228
  228
  
    
  <xsd:element name="taxon">


  		




  229
  229
  
    
    <xsd:complexType>


  		




  
  230
  
    
      <xsd:annotation>


  		




  
  231
  
    
        <xsd:appinfo>


  		




  
  232
  
    
            <annox:annotate target="class">@com.fasterxml.jackson.annotation.JsonInclude(com.fasterxml.jackson.annotation.JsonInclude.Include.NON_EMPTY)</annox:annotate>


  		




  
  233
  
    
        </xsd:appinfo>


  		




  
  234
  
    
      </xsd:annotation>


  		




  230
  235
  
    
      <xsd:complexContent>


  		




  231
  236
  
    
        <xsd:extension base="tns:taxonBase">


  		




  232
  237
  
    
          <xsd:sequence>


  		




  233
  238
  
    
            <xsd:element name="higherClassification" type="tns:higherClassificationElement" maxOccurs="unbounded" minOccurs="0"></xsd:element>


  		




  234
  239
  
    
            <xsd:element name="identifier" type="xsd:string"></xsd:element>


  		




  
  240
  
    
            <xsd:element name="parentTaxon">


  		




  
  241
  
    
                <xsd:complexType>


  		




  
  242
  
    
                    <xsd:sequence>


  		




  
  243
  
    
                        <xsd:element name="scientificName" type="xsd:string"></xsd:element>


  		




  
  244
  
    
                        <xsd:element name="identifier" type="xsd:string"></xsd:element>


  		




  
  245
  
    
                    </xsd:sequence>


  		




  
  246
  
    
                </xsd:complexType>


  		




  
  247
  
    
            </xsd:element>


  		




  235
  248
  
    
          </xsd:sequence>


  		




  236
  249
  
    
        </xsd:extension>


  		




  237
  250
  
    
      </xsd:complexContent>


  		




  ......




  279
  292
  
    
                  </xsd:appinfo>


  		




  280
  293
  
    
                </xsd:annotation>


  		




  281
  294
  
    
              </xsd:element>


  		




  
  295
  
    
              <xsd:element name="addParentTaxon" type="xsd:boolean">


  		




  
  296
  
    
              <xsd:annotation>


  		




  
  297
  
    
                  <xsd:appinfo>


  		




  
  298
  
    
                    <annox:annotate target="getter">


  		




  
  299
  
    
                      @com.wordnik.swagger.annotations.ApiModelProperty("Indicates whether the direct higher taxon of the accepted taxon should be included into the response. Turning this option on may lead to an slight increase of the response time.")


  		




  
  300
  
    
                    </annox:annotate>


  		




  
  301
  
    
                  </xsd:appinfo>


  		




  
  302
  
    
                </xsd:annotation>


  		




  
  303
  
    
              </xsd:element>


  		




  282
  304
  
    
            </xsd:sequence>


  		




  283
  305
  
    
          </xsd:complexType>


  		




  284
  306
  
    
        </xsd:element>


  		












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