EDIT

• fixed toggling of title cache lock

remmoved setting of database name to empty when cloning

make lineSeparator 1.6 compatibel again

added new constructor with mode argument for wizard pages and deprecated the old constructor.
CdmDataSourceWizard and CdmDataSourceTypeSelectionWizardPage now call the new constructor.

refactoring cdm data source to cdm source
plugin.xml : added clone menu item / command

refactored wizard dialog and pages to allow for easy in place editing and cloning of datasources.
CdmDataSourceRepository : added methods for (I)PersistentRemoteSource

refactoring to change the specific (I)CdmDataSource to the more generic (I)CdmSource to prepare fro remoting
CloneDataSourceHandler : new handler to clone a datasource

adding a taxon bulk editor and changes because the delete methods does not throw exceptions anymore

• simplified showParts() method in DetailsViewer for showing empty page

• renamed TextWithLabelElement to avoid import/name conflicts (ma be renamed if we fully refactor using MVC pattern)

• added interfaces and classes for MVC pattern
  • implemented/adapted MVC pattern for TextWithLabelElement and EnumTermCombo element

• commented "Original Label Data" text field because it is not yet used in trunk

CdmStore : no longer need to set configuration in hibernate classes here
CdmStoreConnector : new method to retrieve configuration based on cdm source type

• set default derivate typ filter to "unknown"

• javadoc

• partially added handling of input fields

removed repeated call to get all cdm sources

updating to align with refactored cdm source classes / interfaces

• refactored context menu for DerivateView to be programmatic instead of declarative (using plugin.xml)
  • fixed icon bug for DerivateSearchView

• added update() method to DerivateView
  • display different icon for SingleReads linked to multiple Sequences

• added Copy/Paste for SingleRead->Sequence to DerivateView
  • copying actually just creates a link

• fixed user message

• added gel photo detail element to Amplification wizard

• removed Amplification as a TreeNode from the DerivateView
  • added Amplification to DetailsView of SingleRead as an EntitySelectionElement

• fixed javadoc

• organize imports for new molecular services

• reset input fields of DerivateSearchView when context stops

• added drag'n'drop support for Sequences
  • added context listener to DerivateSearchView
  • refactored MVC pattern of DerivateSearchView

• added timeout to internet availability check

• fixed ClassCastException for FeatureNodeContainers

• fixed class cast exception resulting from TreeNodes of DerivateView

taxeditor part of fix for #4121 (Changing password does not work)

• added isEnabled() method to IEnableableFormElement

• removed StoreUtil.getCdmEntity() invocation (#4091)

• implemented EntitySelectionElement for Primer
  • adapted details views with primer selection element

implementing #4120: User always needs to have the right to change password and hiding all user related menu contributions if no user is logged in

setting application configuration and boolean remoting flag (bean) in hibernate proxy classes to differentiate local and remoting

after review final modification for #4115 ('editor' users cannot create new references via the reference select list)

implementing #4123 (add idInVocabulary to term labels in editor)

catching PermissionDeniedExceptions when only doing a check, so these exceptions no longer pollute the log

fixing #4115 ('editor' users cannot create new references via the reference select list)

fixing #4116 (ClassCastException when selecting Euro+Med top level area in DistributionElement details view)

fixing problem of publish checkbox disabled state being overwritten

• refactored selection of DerivateView to be TreeNode
  • adapted selection handling
  • restructured derivate hierarchy
  • Amplifications are now a direct child of Sequences
  • the can only be created when having a SingleRead
  • this representation does not affect the cdm structure

fixing: #4110 (imlement nicer warning dialogue in Taxon Editor for permission denied exception)

more details in exception message of StoreUtil.getCdmEntity()

avoiding NPE and other exceptions

no longer using a conversation for the login dialog and thus fixing problems after putting wrong credentials

fixing setEnabled method

• fixed event handling by creating and linking the missing elements

• added missing DNA Quality section

• adpated DNA DetailsViews according to current development

• renamed getBaseUnit() to baseUnit()

• added transparency to icons

• added util method to get for getting a CDM entity (used in authenication/permission framework)
  • made use of this method where the type of the parameter was too general (like object)
  • made getBaseUnit() of DerivedUnitFacade public

• added icons for Amplification, Sequence and SingleRead

• added code to show icon for Amplification, Sequence and SingleRead (image files still missing)
  • removed text fields for media file in dna DetailsViews
  • added contig file in Sequence DetailsView

• added cascading save to pherogram (Media) of SingleRead
  • added media section to DetailsViews for Amplification (gel photo) and SingelRead (pherogram)

fixing missing text of Group members (User) in details section

protecting editing capabilities of names references and authors - #4055 (action enablement adapts to the users granted authorities)

fix: adding missing case statements

disabling edit button if user is allowed to UPDATE & making text elements selectable

implementing the CommandHandlerButton and using it as button to open the OpenFeatureTreeEditorWizard - #4055 (action enablement adapts to the users granted authorities)

adding warning dialog on unavailabel DefinedTermEditor

fixing broken parameter for eu.etaxonomy.taxeditor.store.openDefinedTermEditor command

• implemented "Save Specimen" command
  • added @Override annotations

RolesSourceProvider to enable activities by cdm roles and protecting bulkeditors and term editors - #4055 (action enablement adapts to the users granted authorities)

base implementation and configuration for securing the editor - #4055 (action enablement adapts to the users granted authorities)

• updated SpecimenImportWizard
  • refactored BioCase querying to be a separate job

• added preference which shows determination section only for FieldUnits in the DetailsView
  • added missing parameters for SingleRead DetailsView

• added missing parameters for SingleRead DetailsView

• added option to set text limit for TextWithLabelElement

reverting cdm application / controller refactoring and simply extending the CdmApplicationRemoteConfiguration class
by throwing UnsupportedOperationException for methods that are not supported by remoting

correcting import

refactoring ICdmApplicationDefaultConfiguration

refactoring CdmApplicationConfiguration/Controller to allow for remoting
CdmStoreConnector : added application configuration call for remoting (currently commented)

• added "Search"-Button to DerivateSearchView

• enabled DerivateType filter in DerivateSearchView

merge from trunk

• added combo controller to combo field in DerivateSearchView

solving #4056 (taxeditor responds with nicer dialogue in case a user executes a prohibited operation)

merge from trunk

added possibility to switch to remoting

• additional fix for #3589 and #3588

• separated GUI from control elements for term combo widget (part of #3627)

part 2 of preliminary solution to #4053 (Transient field User.authorities not refreshed on reloading entity)

solving #4013 (GrantedAuthority: Humane label of TaxonNode authorities)

move elevation back to first page #4037

part 2 of fixing #2414 (Group updating doesn't work) by committing and restarting the transaction in the conversation

more log.debug statements

water -> watersurface #4031

change statement to state(ment) #3864

solving #4011 (disallow changing publish flag for users with insuffcient rights) for TaxonBase

solving #4011 (disallow changing publish flag for users with insuffcient rights) for TaxonBase

adapting to new use new ICdmPermissionEvaluator

• replaced togglable title cache field with text label to enter polytomous key label (fixes #3952)

editor part done for #4006 (remove general map parameters from distribution and occurrence map service methods)

preparing for removal of params - #4006 (remove general map parameters from distribution and occurrence map service methods)

• added .xlsx and *. to SpecimenCdmExcelImport file chooser (fixes #3971)

• implemented SynonymRelationship detail section for the DetailsView of Synonyms (#3588 #3589)