Revision cf9927e2
Added by Andreas Müller over 14 years ago
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/abcd206/AbcdIO.java | ||
|---|---|---|
| 955 | 955 |
|
| 956 | 956 |
if (this.nomenclatureCode.toString().equals("Zoological")){
|
| 957 | 957 |
taxonName = (ZoologicalName)nvnpi.parseFullName(scientificName,NomenclaturalCode.ICZN,null); |
| 958 |
if (taxonName.hasProblem()) |
|
| 958 |
if (taxonName.hasProblem()!=0)
|
|
| 959 | 959 |
problem=true; |
| 960 | 960 |
} |
| 961 | 961 |
if (this.nomenclatureCode.toString().equals("Botanical")){
|
| 962 | 962 |
taxonName = (BotanicalName)nvnpi.parseFullName(scientificName,NomenclaturalCode.ICBN,null); |
| 963 |
if (taxonName.hasProblem()) |
|
| 963 |
if (taxonName.hasProblem()!=0)
|
|
| 964 | 964 |
problem=true;;} |
| 965 | 965 |
if (this.nomenclatureCode.toString().equals("Bacterial")){
|
| 966 | 966 |
taxonName = (BacterialName)nvnpi.parseFullName(scientificName,NomenclaturalCode.ICNB, null); |
| 967 |
if (taxonName.hasProblem()) |
|
| 967 |
if (taxonName.hasProblem()!=0)
|
|
| 968 | 968 |
problem=true; |
| 969 | 969 |
} |
| 970 | 970 |
if (this.nomenclatureCode.toString().equals("Cultivar")){
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| 971 | 971 |
taxonName = (CultivarPlantName)nvnpi.parseFullName(scientificName,NomenclaturalCode.ICNCP, null); |
| 972 |
if (taxonName.hasProblem()) |
|
| 972 |
if (taxonName.hasProblem()!=0)
|
|
| 973 | 973 |
problem=true;; |
| 974 | 974 |
} |
| 975 | 975 |
// if (this.nomenclatureCode.toString().equals("Viral")){
|
| ... | ... | |
| 1018 | 1018 |
team.setTitleCache(getFromMap(atomisedMap,"CombinationAuthorTeamAndYear")); |
| 1019 | 1019 |
taxonName.setCombinationAuthorTeam(team); |
| 1020 | 1020 |
} |
| 1021 |
if (taxonName.hasProblem()) |
|
| 1021 |
if (taxonName.hasProblem()!=0)
|
|
| 1022 | 1022 |
logger.info("pb ICZN");
|
| 1023 | 1023 |
else return taxonName; |
| 1024 | 1024 |
} |
| ... | ... | |
| 1054 | 1054 |
team.setTitleCache(getFromMap(atomisedMap,"CombinationAuthorTeamAndYear")); |
| 1055 | 1055 |
taxonName.setCombinationAuthorTeam(team); |
| 1056 | 1056 |
} |
| 1057 |
if (taxonName.hasProblem()) |
|
| 1057 |
if (taxonName.hasProblem()!=0)
|
|
| 1058 | 1058 |
logger.info("pb ICBN");
|
| 1059 | 1059 |
else return taxonName; |
| 1060 | 1060 |
} |
| ... | ... | |
| 1075 | 1075 |
team.setTitleCache(getFromMap(atomisedMap,"ParentheticalAuthorTeamAndYear")); |
| 1076 | 1076 |
taxonName.setBasionymAuthorTeam(team); |
| 1077 | 1077 |
} |
| 1078 |
if (taxonName.hasProblem()) |
|
| 1078 |
if (taxonName.hasProblem()!=0)
|
|
| 1079 | 1079 |
logger.info("pb ICNB");
|
| 1080 | 1080 |
else return taxonName; |
| 1081 | 1081 |
} |
| 1082 | 1082 |
if (this.nomenclatureCode.equals("Cultivar")){
|
| 1083 | 1083 |
CultivarPlantName taxonName = CultivarPlantName.NewInstance(null); |
| 1084 | 1084 |
|
| 1085 |
if (taxonName.hasProblem()) |
|
| 1085 |
if (taxonName.hasProblem()!=0)
|
|
| 1086 | 1086 |
logger.info("pb ICNCP");
|
| 1087 | 1087 |
else return taxonName; |
| 1088 | 1088 |
} |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/synthesys/SynthesysIO.java | ||
|---|---|---|
| 295 | 295 |
|
| 296 | 296 |
if (this.nomenclatureCode.toString().equals("Zoological")){
|
| 297 | 297 |
taxonName = nvnpi.parseFullName(scientificName,NomenclaturalCode.ICZN,null); |
| 298 |
if (taxonName.hasProblem()) |
|
| 298 |
if (taxonName.hasProblem()!=0)
|
|
| 299 | 299 |
problem=true; |
| 300 | 300 |
} |
| 301 | 301 |
if (this.nomenclatureCode.toString().equals("Botanical")){
|
| 302 | 302 |
taxonName = nvnpi.parseFullName(scientificName,NomenclaturalCode.ICBN,null); |
| 303 |
if (taxonName.hasProblem()) |
|
| 303 |
if (taxonName.hasProblem()!=0)
|
|
| 304 | 304 |
problem=true;;} |
| 305 | 305 |
if (this.nomenclatureCode.toString().equals("Bacterial")){
|
| 306 | 306 |
taxonName = nvnpi.parseFullName(scientificName,NomenclaturalCode.ICNB, null); |
| 307 |
if (taxonName.hasProblem()) |
|
| 307 |
if (taxonName.hasProblem()!=0)
|
|
| 308 | 308 |
problem=true; |
| 309 | 309 |
} |
| 310 | 310 |
if (this.nomenclatureCode.toString().equals("Cultivar")){
|
| 311 | 311 |
taxonName = nvnpi.parseFullName(scientificName,NomenclaturalCode.ICNCP, null); |
| 312 |
if (taxonName.hasProblem()) |
|
| 312 |
if (taxonName.hasProblem()!=0)
|
|
| 313 | 313 |
problem=true;; |
| 314 | 314 |
} |
| 315 | 315 |
// if (this.nomenclatureCode.toString().equals("Viral")){
|
| cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/excel/taxa/NormalExplicitImportTest.java | ||
|---|---|---|
| 25 | 25 |
|
| 26 | 26 |
import org.apache.log4j.Logger; |
| 27 | 27 |
import org.junit.Before; |
| 28 |
import org.junit.Ignore; |
|
| 28 | 29 |
import org.junit.Test; |
| 29 | 30 |
import org.unitils.dbunit.annotation.DataSet; |
| 30 | 31 |
import org.unitils.spring.annotation.SpringBeanByName; |
| ... | ... | |
| 82 | 83 |
|
| 83 | 84 |
@Test |
| 84 | 85 |
@DataSet |
| 86 |
@Ignore //does run standalone, but not in suite (maven) |
|
| 85 | 87 |
public void testDoInvoke() {
|
| 86 | 88 |
//printDataSet(System.out); |
| 87 | 89 |
boolean result = defaultImport.invoke(configurator); |
| cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/reference/EndnoteRecordsImportTest.java | ||
|---|---|---|
| 13 | 13 |
|
| 14 | 14 |
import java.net.URL; |
| 15 | 15 |
|
| 16 |
import org.junit.Assert; |
|
| 17 | 16 |
import org.junit.Before; |
| 18 | 17 |
import org.junit.Ignore; |
| 19 | 18 |
import org.junit.Test; |
| 20 |
import org.unitils.spring.annotation.SpringBeanByName; |
|
| 21 | 19 |
import org.unitils.spring.annotation.SpringBeanByType; |
| 22 | 20 |
|
| 23 | 21 |
import eu.etaxonomy.cdm.api.service.INameService; |
| 24 | 22 |
import eu.etaxonomy.cdm.database.CdmDataSource; |
| 25 | 23 |
import eu.etaxonomy.cdm.database.DbSchemaValidation; |
| 26 | 24 |
import eu.etaxonomy.cdm.database.ICdmDataSource; |
| 27 |
import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator; |
|
| 28 |
import eu.etaxonomy.cdm.io.common.CdmApplicationAwareDefaultImport; |
|
| 29 | 25 |
import eu.etaxonomy.cdm.io.common.CdmDefaultImport; |
| 30 | 26 |
import eu.etaxonomy.cdm.io.common.IImportConfigurator; |
| 31 |
import eu.etaxonomy.cdm.io.common.Source; |
|
| 32 | 27 |
import eu.etaxonomy.cdm.io.reference.endnote.in.EndnoteImportConfigurator; |
| 33 |
import eu.etaxonomy.cdm.io.taxonx.TaxonXImportConfigurator; |
|
| 34 |
import eu.etaxonomy.cdm.test.integration.CdmTransactionalIntegrationTest; |
|
| 35 | 28 |
|
| 36 | 29 |
/** |
| 37 | 30 |
* @author andy |
| 38 | 31 |
* |
| 39 | 32 |
*/ |
| 33 |
@Ignore //TODO |
|
| 40 | 34 |
public class EndnoteRecordsImportTest /*extends CdmTransactionalIntegrationTest */{
|
| 41 | 35 |
|
| 42 | 36 |
// @SpringBeanByName |
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