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Revision ad6077dc

Added by Andreas Müller over 12 years ago

make mapping type configurable

View differences:

cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/dwca/in/DwcaImportConfigurator.java
18 18 
import eu.etaxonomy.cdm.io.common.IImportConfigurator;
19 19 
import eu.etaxonomy.cdm.io.common.ImportConfiguratorBase;
20 20 
import eu.etaxonomy.cdm.io.common.mapping.IInputTransformer;
21 
import eu.etaxonomy.cdm.io.dwca.in.IImportMapping.MappingType;
21 22 
import eu.etaxonomy.cdm.model.reference.Reference;
22 23 
import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
23 24 

  		




  ......




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	private static IInputTransformer defaultTransformer = new DwcaImportTransformer();


  		




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	private boolean usePartitions = true;


  		




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	private int defaultPartitionSize = 1000;


  		




  
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	private int defaultPartitionSize = 2000;


  		




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//	//new


  		




  36
  
  
    
//	private boolean doSpecimen = true;  //reads the specimen worksheet


  		




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//	private boolean doAreaLevels = true;  //reads the areaLevels worksheet


  		




  38
  
  
    
//	private boolean doExtensionTypes = true;  //reads the extensionType worksheet


  		




  39
  
  
    
	


  		




  40
  
  
    
	


  		




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//	private boolean useCountry;  //if isocountry and country is available, use country instead of isocountry 


  		




  42
  
  
    
//	//tries to match areas by the abbreviated label


  		




  43
  
  
    
//	//TODO still needs to be refined as this may hold only for certain vocabularies, levels, ...


  		




  44
  
  
    
//	//there also maybe more strategies like first label, then abbreviated label, ....


  		




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//	private TermMatchMode areaMatchMode = TermMatchMode.UUID_ONLY;


  		




  46
  
  
    
//	private PersonParserFormatEnum personParserFormat = PersonParserFormatEnum.POSTFIX;  //


  		




  47
  
  
    
//	


  		




  48
  
  
    
//	//if true, determinations are imported also as individualAssociations	


  		




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//	private boolean makeIndividualAssociations = true;


  		




  50
  
  
    
//	private boolean useMaterialsExaminedForIndividualsAssociations = true;


  		




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//	private boolean firstDeterminationIsStoredUnder = false;


  		




  52
  
  
    
//	private boolean determinationsAreDeterminationEvent = true;


  		




  53
  
  
    
//	


  		




  54
  
  
    
//	private boolean preferNameCache = true;


  		




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//	private boolean createTaxonIfNotExists = false;


  		




  56
  
  
    
////	private boolean includeSynonymsForTaxonMatching = false;


  		




  57
  
  
    

  		




  
  36
  
    
	private IImportMapping.MappingType mappingType = MappingType.InMemoryMapping;


  		




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  ......




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	public int getDefaultPartitionSize() {


  		




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		return defaultPartitionSize;


  		




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	}


  		




  
  104
  
    

  		




  
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	public IImportMapping.MappingType getMappingType() {


  		




  
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		return mappingType;


  		




  
  107
  
    
	}


  		




  
  108
  
    

  		




  
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	public void setMappingType(IImportMapping.MappingType mappingType) {


  		




  
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		this.mappingType = mappingType;


  		




  
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	}


  		




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}


  		












  

    
      cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/dwca/in/DwcaImportState.java
    
  





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public class DwcaImportState extends ImportStateBase<DwcaImportConfigurator, DwcaImport>{


  		




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	private static final Logger logger = Logger.getLogger(DwcaImportState.class);


  		




  35
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	UUID uuid = UUID.randomUUID();


  		




  
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	private UUID uuid = UUID.randomUUID();


  		




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	boolean taxaCreated;


  		




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	private Map<String, Map<String, IdentifiableEntity>> partitionStore;


  		




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	private IImportMapping mapping = new DatabaseMapping(uuid.toString());


  		




  
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	private IImportMapping mapping = getConfig().getMappingType().getMappingInstance(uuid.toString());


  		




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	public DwcaImportState(DwcaImportConfigurator config) {


  		




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		super(config);


  		












  

    
      cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/dwca/in/IImportMapping.java
    
  





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*/


  		




  9
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package eu.etaxonomy.cdm.io.dwca.in;


  		




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import java.util.List;


  		




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import java.util.Map;


  		




  13
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import java.util.Set;


  		




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  ......




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 */


  		




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public interface IImportMapping {


  		




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	public enum MappingType{


  		




  
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		InMemoryMapping(0),


  		




  
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		DatabaseMapping(1);


  		




  
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		private int index; 


  		




  
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		private MappingType(int index){


  		




  
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			this.index = index; 


  		




  
  31
  
    
		}


  		




  
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		public IImportMapping getMappingInstance(String mappingId){


  		




  
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			if (this.equals(MappingType.InMemoryMapping)){


  		




  
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				return new InMemoryMapping();


  		




  
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			}else if (this.equals(MappingType.DatabaseMapping)){


  		




  
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				return new DatabaseMapping(mappingId);


  		




  
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			}else{


  		




  
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				throw new RuntimeException("Unknown MappingType: " + this.toString());


  		




  
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			}


  		




  
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		}


  		




  
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	}


  		




  
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	/**


  		




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	 * Put the destination object with for the given namespaced identifier into the mapping.


  		




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	 * @param namespace


  		












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