Update to hibernate 5 for cdmlib-io #4716
migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716
Upgrade to hibernate 5 with persistence tests running #4716
Further adapt to new jackson and new lucene version #4716
Fix associated specimen retrieval for name determination
Added test for taxon (name) <-> specimen association
fix #5341 and fixing deletion of specimen
Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate validator #4716 and #4702
Extended test for specimens associations
Add test for all possible specimen associations
fixing #4878
Fix failing tests
When retrieving associated specimens retrieve all IndividualsAssocations, TypeDesignation, Determinations
fix merge description into another description
fixing #5303
Fix sequence and single read deletion #5200
Add test for deleting SingleRead that is attached to multpile seuqences #5200
fixing cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/FeatureNodeDeletionConfigurator.java
#5318
Fix typo
Fix moving of derivatives with null parent (+test)
fix #5104 and #5328
Allow null for parent when moving derivatives
fix #5330
fix #5179 and adapting the tests because the classification argument is needed now
fix delete of specimen with specimenDescriptions
Add vocabulary list method by term types #3843
Cleanup SecurityTest
Adapt listeners and tests to new pre-insert strategy #5066
#5256 Add test for description reference problem
minor
fixing move Accepted taxon to synonym
more detailed measuring time of accumulation in TransmissionEngineDistribution for performance testing
adding more test cases for ClassificationService
simplifying test code
adapting test to modified test data
fixing broken pager mechanism for listRankSpecificRootNodes() and improving test coverage
set the test to ignore, because the funcionality is not implemented yet.
revert the local changes
changes for tcs import, fixing taxonnodecomparator, polytomouskey deletion and converting from person to team and team to person
changes for deleting polytomous key nodes
#4408 fixing a bug regarding fallback areas and adding more tests
merging fallbackAreaFilter rule into hiddenArea rule
all rules separated
Avoid concurrent modification during deep delete.
Correct test to save taxon before making servive layer call
#5056 Refactored 'save' call to return saved entity
test for fallbackArea rule in DescriptionUtility.filterDistrubution for EuroPlusMed - #4408
implementing fallbackArea rule into DescriptionUtility.filterDistrubution for EuroPlusMed - #4408
Ignore createTestData()
Extend step-by-step deletion test
subAreaPreference Rule can be run completely separately - also reoving old unused code - removing documentation on osoltete rule - removing all missleading errors on the subAreaPreference in documentation an comments
Clean up transmission engine and BerlinModelTransformer
Rename NonViralName.xxxAuthorTeam to xxxAuthorship #4968
Copy DeterminationEvent data when moving derivates
DescriptionServiceImpl : added dao delete of description OccurrenceServiceDeepDeleteTest : removed extra delete call TaxonServiceImplTest : added testing of taxon.removeDescription
Merge branch 'master' of wp5.e-taxonomy.eu:/var/git/cdmlib into remoting-4.0
Conflicts: cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTerm.java cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NonViralName.java cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/INameService.java...
merge trunk into 3.6 branch
changes for #3998
fix naming of ClassificationServiceDeepTest
moving UuidAndTitleCache from model to persistence. #4799
Conflicts: cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTerm.java cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTermBase.java cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/Reference.java...
Partial fix of Ticket #4728
fix move description element bug #4806
first implementation of team->person->team conversion #4769, #4770
Fixing failing search test, using better utf8 handling
fixing broken characters
further fixes for collectorTitle #4311
merge validation2 and model 3.5 into trunk
fix search for common names in editor and minor
for infrageneric unranked rank adding unranked fixing bug with deletion of names and homotypicalGroups
CdmCacherTest : ignoring for now since we have reverted to using termmaps on server side ITaxonService, TaxonServiceImpl, ITaxonNodeService, TaxonNodeServiceImpl, INameService, NameServiceImpl,IDescriptionService, DescriptionServiceImpl : added uuid methods and return type as UpdateResult with updatedObjects set...
merge from trunk
MockCdmCacher : not required TaxonServiceSearchTest : removed reference to mock cacher
add UpdateResult and make DeleteResult a subclass
created new service in classificationService
it is a first draft of the createHierarchyService based on taxonNames and until genus level.
fix findByIdentifier failing test
latest changes for findByIdentifier service
improve and rename findByIdentifier service
remove imports
correct logger info
first tests for listByIdentifier