EDIT

Vaadin Exception handling and minor changes

Vaadin Exception handling and minor changes

merge-update from trunk

fix NOMECLATURAL_REFERENCES in Statistics controller

changed scope of main view

merge-update from trunk

latest changes for VaadinPrototype

• paged tables
• lazy loaded container
• crud functionality for distribution status
• classification selection view
• named area selection view

removed deprecated mortbay logger in MediaController not only because it is deprecated but also because of conflicts with vaadin framework

rename Reference.authorTeam -> authorship #4432

rename Reference.authorTeam -> authorship #4432

adapt tests to missing Reference.series #4293 and not null constraint for test database ddl #4382

rename Reference.authorTeam -> authorship #4432

merge-update from trunk

Added a classification selector view for vaadin client.

merge-update from trunk; added import preference to add media as media specimen

refactoring taxon controllers, reducing code duplication

merge-update from trunk

first attempt to fix #4294 (order of map legend entries conforms to term order)

• changed initialization of CDM entities
  • fixed typo

• restructured derivate hierarchy query
  • step 1: get associated field units for a taxon (taxon service)
  • step 2: assemble derivate hierarchy for each field unit (occurrence service)

• cleaned code

merge-update from trunk

reenabling vaadin + more specific component scan for mvc

whitespace

adapting contollers to new CdmAntPathMatcher pattern syntax

changing the CdmAntPathMatcher to make it conform with spring mvc, where a ReqeustMapping values always has a leading slash even if it is implicit (it is added by the RequestMappingHandlerMapping if it is missing!)

implementing tests for the pathmatchers and fixing a bug in the CdmAntPathMatcher

resolving ambiguity in serveral web service controllers

merge-update from trunk

fixing a bug in ClassificationPortalListController

resolvin a conflict and cleaning up of ClassificationPortalListController, this changes the thre return type of the list method in the controller (recovering lost commithere)

fixing regression intruduced by r20623 for #4185 (Progress monitor not available on production server)

harmonizing log levels

• added service for retrieving all "associatied" FieldUnits for a taxon
  • added service for retrieving the "associated derivate hierarchies" for a taxon

• merge update from trunk

refactoring - related to #4268 (allow defining custom presence and absence term colors for EditGeoServiceUtilities)

added optional possibility for responding with {name, uuid} object for classification

rename getByIdInVocabulary

implementation for #4268 (allow defining custom presence and absence term colors for EditGeoServiceUtilities) and removing obsolete termservice parameters

merge update from trunk

fixing NPE in DescriptionListController

adding nameCache of NonViralNames to responses of rest services

clean up

solving probelms with the HttpStatusMessage class and potentially fixing a problem for palmweb with the image metadata display

minor

remove deprecated method

set sorting in getChildNodes optional & minor for delete in bulk editor

OccurrenceCatalogueController : added check for uuid corresponding to accepted taxon
OccurrenceSearch : updated terms to be consistent
occurrence-catalogue-default : updated doc

DerivedUnitFacade : added getRights method
OccurrenceCatalogueController : maintenance , clean up and added sources and rights to the init facade strategy
OccurrenceSearch : reverted back code for specimen related information

updated controller and search to optimise the code for retrieving all occurrences.
added apt doc for endpoint

minor fixes for the checklist controller, now each endpoint can have a different documentation resource

Changed project scpecific naming to a more generic one.

Changed project scpecific naming to a more generic one.

Changed project scpecific naming to a more generic one.

Changed project scpecific naming to a more generic one.

minor

Added new Service Endpoint [cdmserverURL]/checklist/flockSearch for the new flockSearch webService

included skeleton for flockSearch

better use of generics in service layer and persistence list methods

remove deprecated method (cont.)

improve includeAllSubareas

adapt the service method loadChildNodesOfTaxonNode
with param recursive choose whether you get only the children of the node or the children of the children ...

fix CCE in TaxonListController #4420

Cachefile lives now for at least 7 days

Changed if clause to fix #4194

Uncommented check for cacheFile older than 24h see Ticket #4194

adding context path to url

*Update of the CSVExport WS.
*fixed memory leak
*new service method to pull list of TaxonNode according to a given classification

loading annotations with distribution elements - #3348 (should annotations always be returned for cdm instances? [DISCUSS])

fixing #4174 (simple search for Micrasterias* causes LazyInitializationException)

fixing TYPEDESIGNATION_INIT_STRATEGY to avoid LIEs

fixing NAMERELATIONSHIP_INIT_STRATEGY to avoid LIEs

fixing #4176 (Dataportal shows wrong symbols for non-symmetric taxon relationships)

fixing initstrategy for #3182 (roteliste: categorical data does not show up)

Generate CSV file from pojo

performance improvement for listChildNodes of a taxon

fixing #4168 (performance problem with DescriptionListPortalController.getDescriptionElementsForTaxon())

cdmlib part for #3766 (Check if specimenOrObservation.kindOfUnit is shown correctly in data portal)

adding missing statisticalValues.* to init strategy. fixes #4165 (algaterra: values of specimen descriptions not shown)

cdmlib part of #3576 (Adapt CdmServer and Dataportal to new naming of CategoricalData.stateData)

deactivated controller due to urgent release and unfinished business with a serious memory leak

contoller methods with return type List should always return a list, even if it is empty

removing the deprecated method TaxonPortalController.doGetNameTypeDesignations() for #2280 (Stop using portal/taxon//bin/zsh/nameTypeDesignations)

avoiding recurive calls, replaced by while loop

avoiding NPE

bug fix: list and page REST services must return List or page objects, not ModelAndView

checklist webservice optimized

*integrated a ModelAndView for file downloads
*integerated a ProgressMonitor for csv export
*export is threaded
*extended ProgressMonitor with origin property

refactoring taxon controllers and thus solving #2595 (portal/taxon/{uuid}/accepted/{uuid} producing too big data objects)

fixing #4112 (portal/taxon/{uuid}/accepted/{uuid} takes exceedingly much time in specific cases) and #2595 (portal/taxon/{uuid}/accepted/{uuid} producing too big data objects) this also solves the according issue mentioned in #3336 (Improve overall dataportal page loading performance)

remove link to the apt file for the documentation. ie, there is no external documentation yet

add occurrence controler for the occurrence web-service

fixing #4148 (problems with simple search)

Removed Java 1.7 specific function due to backwards compatability

enhancing feature for checklist WS:

*added caching for CSV download
--> a export will be triggered only once and after 24h to renew the cached file
*added pagination for json/XML

redlist WS export added .json and .xml functionality

automatically testing of cdmlib-remote-webapp during the maven lifecycle - #4094: automatically test cdmlib-remote-webapp

cleaned unused imports

removed not used functionality see Ticket #3520

WS CSV for redlist project

Cleaning Components

Bug fix...ui is closed when logged out...this leads to a complete reset of the ui provider