Cleanup description generics (related to #5357)
revert chamges in MatchMode
Fix bug for embeddable classes in AdvancedBeanInitializer #5383
fixing #4878
Add test to ensure bean initialization works on hibernate proxies #5077
minor
fixing getUUIDAndTitleCache for Classification and excluding taxa
Fully remove old vocabulary.byClass methods #3843
Remove listEmpty method from TermVocabularyDao #3843
Add vocabulary list method by term types #3843
Adapt listeners and tests to new pre-insert strategy #5066
#5288 - avoiding unncessary entitiy loading, using uuid instead in dao methods
Update test database schema to allow null for consensus sequence
fixing broken pager mechanism for listRankSpecificRootNodes() and improving test coverage
Increase reference titlecache in test DBs
whitespace
Fix UniqueKey issue for sequence ciations
Add to clear DB script
#5056 Refactored 'save' call to return saved entity
Fix updateSortindex test for TaxonNode javassist objects
Solve merge conflict for CdmTransactionalIntegrationTest
Cleanup dao test classes
Rename remaining occurrences of xxxAuthorTeam #4968
Rename remaining occurrences of combinationAuthorTeam and basionymAuthorTeam in code and other files
Rename NonViralName.xxxAuthorTeam to xxxAuthorship #4968
Fix ignored test in TaxonDaoHibernateImplTest #2815
Fix ignored test in DescriptionElementDao #2815
Remaining tasks
Merge branch 'RankSpecificRootNodes-1'
Fixing test for listRankSpecificRootNodes
fix listRankSpecificRootNodes behavior for ranks in between and some additional tests
some additional test for #2778
add some tests for rankSpecificRootNodes, related to #2778
cleanup dataset
fix testdata for #2778
fixing missing LanguageString in test dataset for #2778. However, test still fails.
fix #4976 Titlecache for new vocabularies not filled correctly
merging test file from remote master
implementing test to reproduce issue #2778 - the test runs succesfully, so the issue is already solved
providing a example implementation of createTestDataSet()
rename authorTeam -> authorship #4332 for name authors
merge trunk into 3.6 branch
Move FullCoverageDataGenerator from test to real, to avoid dependency problems.
adapt FullCoverageData method
fix test and add factory method #3583
some cleanup, renaming and a test for TaxonNodeAgentRelation #3583
more getters/adders, update script, vocabulary and test vocabulary for TaxonNodeAgentRelation #3583
first implementation of TaxonNodeAgentRelation #3583
merging trunk into 3.6 branche
adding test for term titleCache creation #3148
moving UuidAndTitleCache from model to persistence. #4799
Simplify table structure for CategoricalData-StateData and and QuantitativeData_StatisticalMeasurementValue #4841
fix tests for model 3.6
merge trunk into model change 3.6
try to fix ConcurrentModificationException in ValidationExcecutorTest #4851
Adding firstSeqPosition, leftCutPosition and rightCutPosition to SingleReadAlignment #4743 , Update script still missing
implement datasource type inference for external datasources: #3910
additing titleCache to administrative area
fix bug in TaxonNodeDaoHibernateImplTest.testSortindexForJavassist2
Add hasMoreMembers to Team, update script still missing #4791
Fix merging of names of different types test
remove onlyReallocate links as this is not yet implemented #4768
Make deduplication of TeamOrPersonBase possible in cdmlib #4768 and solve test problem in CdmGenericDaoImplTest #2096, finding some bugs in between
correct handling of terms with multiple representations
implementing better namedAreasInUse service for #3994 (Select widget to choose the filter areas for the advanced search)
add tests to avoid inconsistencies in recursive cdm updater calls
merge validation commits r23146, r23162, r23163 into trunk
add listener for taxon name in determination event and run update script again
fix test environment for Identifier being Annotatable #4673
fixing persistence tests on AgentBase.collectorTitle #4311
add collectorTitle and protectedCollectorTitleCache to Team(orPersonBase) #4311
merge validation2 and model 3.5 into trunk
add amplification cache test
rename abstract class
merge cdmlib-persistence from validation branch to trunk
first tests for listByIdentifier
merge-update from trunk
some bugfixes to new Amplification modelling #4541
separate Amplification and AmplificationResult.java #4541
fixing test for SingleReadAlignment and removal of SpecAndObs_Sequence
implement SingleReadAlignment.java #4529 not yet ready
remove Specimen_Sequence table from ddl
merge PresenceTerm and AbsenceTerm #4521
Add institution to DerivationEvent and Amplification
add DnaMarker to Primer #4470
add DNA Quality Type vocabulary
changes in service layer for fixes in bulg editor and search for misapplied names and common names in editor