EDIT

add abbrev title do nomRef parser

minor

remove double dots before year in nomrefs

Remove ". " from year only nom-refs

increased storage capacity of mock cdm cachers

removed 2.6.9 reference

move MockCdmCacher to TermLoader

remove (bot.) for name creation in botanical names of rank section #4122 and #4279

fix failing single model test due to new MockCdmCacher

minor

create new vocabulary for MediaSpecimenKindOfUnit, move Detail image and Specimen scan from old to new vocabulary and create new terms Living plant photo and Artwork #4269

fixing #4278 for FeatureNode

fixing #4278 for PolytomousKeys

alternative for protected: deproxy #4200

cleaning up TaxonNode class and also refactoring solution for #4200

fixing sortindex issue #4200

minor

convenience access for new kindOfUnit uuids #4269

add detail image and specimen scan to kindOfUnit vocabulary #4269

First commit for the CDM Caching api
ICdmCacher, CdmCacher : CDM Cache class based on Ehcache
defaultApplicationContext.xml : added cache package to be component scanned
DefinedTermBase : new set/getCdmCacher method to make cacher available to term classes...

minor

javadoc

start bugfixing and refactoring sortindex handling in TaxonNode

• added null check

allow zoonames with year behind whitespace, not comma

fix matching for Integer #4229

fix "Error occurred when trying retrieve title for Named Area"

• made constructor protected to avoid JavaAssistEnhancementException (see https://stackoverflow.com/questions/7273125/hibernate-envers-and-javassist-enhancement-failed-exception)

fix for TaxonComparatorSearch

improve to better fulfill the Comparator contract

improve to better fulfill the Comparator contract

improve TaxonComparator to better fulfill the general Comparator contract.

further improve comparator contract implementation for TaxonComparatorSearch #4230

remove logging

fixing #4230, comparison issue

null handling for taxon names in nomSortOrderBrdige

serial Version ID for HomGroup

better handling NewInstance in DerivedUnit

set getDescendants back to protected, remove @transient

adding transient annotaion so that it is ignored in serializing

• made move methods session-safe by reloading the cdm entities
  • enhanced/added test
  • made constructor of PreservationMethod protected to avoid JavaAssistEnhancementException

set getDescendants() public

fixing bug for missing reference type

implement cache strategy for section references and remove generics from reference cache strategies.

Add preliminary SectionCacheStrategy and remove generics from reference cache strategies

adding Gazetteer to ReferenceSystem

fix for loading continents correctly

Updated countries #3238

• added cascade saving to PreservationMethod of DerivedUnit

log childIndex is null

fix logging for taxa used multiple times in addParentChild

• added two NewInstance() methods to Amplification
  • added getUuidAndDescriptions to IAmplificationService and DAO

add tests for treeIndex and deletion of nodes

renaming protected setter to setStateData, see #2923 (Rename CategoricalData.states collection to stateData)

• added removeSingleRead() method to Amplification

#4114 sort order in taxon navigator and adding that autonyms could be whether infraspecific or infrageneric (Art. 22.3 and 26.3)

fix compareTo for IdentifiableEntity

• added reference to trac ticket

• made default constructor protected due to a hibernate problem (see https://stackoverflow.com/questions/7273125/hibernate-envers-and-javassist-enhancement-failed-exception)

• fixed a bug in the automated setting of the string length

fix missing idInVocabulary for countries; implement country mapping for EditGeoService (#3452, #3651)

add NomStatus vocabulary for ICZN #4085

Added IsoParaType to SpecimenTypeDesignationStatus

Added IsoParaType to SpecimenTypeDesignationStatus

implementing test and fixing bugs regarding #4081 (TaxonNodeServiceImpl.makeTaxonNodeASynonymOfAnotherTaxonNode() requires TAXONNAMEBASE.[UPDATE])

changed isTopmostNode to check for null parent node taxon

Add database index on treeIndex #4105

minor

improve TaxonCacheStrategy. Use short form where possible

making TaxonNodeByNameComparator truely null save - #2912 (NPE in TaxonNodeByNameComparator when Taxon in TaxoNode is null)

minor

solving some reference cache strategy issues, e.g. #3645

adding isBlank to StrategyBase

minor

Better handling for short citation of references

minor and generics

• added cascading save to SequenceString of a Sequence

• added cascading save for contig file of Sequence

• added cascading save to pherogram (Media) of SingleRead
  • added media section to DetailsViews for Amplification (gel photo) and SingelRead (pherogram)

implementing #4082 (implement default permission groups)

fix problem with changeSynonymToAcceptedTaxon of a synonym being part of an homotypical group

improve author parsing

toString for Reference

minor

minor

correct generics for classification

make description.setTaxon protected and cleanup cyprus altitudes and destinations

User.getAuthorities() made public as preliminary solution to #4053 (Transient field User.authorities not refreshed on reloading entity)

part 1 of fixing #2414 (Group updating doesn't work) by using CascaseType.REFRESH and test method extended

fixing and implementing test for #3782 (Security Context is not updated after editing GrantedAuthorities of a Group)

implementing global PUBLISH role, also introducing the interface IPublishable; solves #3980 (Implement PUBLISH role into cdmlib security)

adapt delete of rootnodes

minor

Set setTitleCache to deprecated and add javadoc

minor

add some listeners commented code for Reference class to handle abbrevTitleCache refresh later on

code cosmetics

minor

making boolean methods in TaggedText all Transient #3991