EDIT

update update script such that no validation errors exist anymore

change some names in molecular and update the update script

first implementation of new molecular package #3360

make Sequence-PhylogeneticTree ManyToMany (#2540)

remove ReferencedMediaBase and Figure, let PhylogeneticTree inherit from Media, remove citation and microcitation columns from DB

adding recordBasis to SpecimenOrObservationBase and removing some DerivedUnit classes (all #3378) and adding kindOfUnit to SpecimenOrObservationBase (except for according termType and vocabulary) #3568.

Remove GenBankAccession class, Spatium for EN_DASH and some minor stuff for v3.3

make Sequence.sequence a clob (#3325)

remove model changing validations fix Delete_Orphan #3379

cleaning up @Field annotations

Hibernate 4 migration. All test running except for SDDImport (Out of memory)

remove import

minor

add lazy load GenBankAccession test

Allow Locus to be loaded by javassist (fixing #3340)

Cascade saveUpdate from Sequence to GenBankAccession

Cascade saveUpdate from DNASample to Sequence

factory method for molecular.GenBankAccession

factory method for molecular.Locus

Factory method for molecular.Sequence

change name of ReferencedMedia to ReferencedMediaBase (#2381)

added cloneable interface

clone methods

make termbase.uri and GenBankAccession.uri real java.net.URI #2340

clone method for Sequence

merge 3.0.2 to trunk

making constructor private again

Addedfactory method and default constructor to DnaSample

merge cate-development2 branch with trunk

Changed public boolean supports* to JavaBeans compliant isSupports*() method signatures in Feature class
Several minor bugfixes in defined terms, validation. Indexing works on all Description Element Base subclasses.

Merged in changes from cate-development branch and upgraded to spring 3.0.0.RC1

Intensive model change for referenceBase and subclass, smaller model changes for taxonBase and marker

Added annotations to support free-text searching of occurrences & related entities

Annotated References, Media, and Agents, and also added more data types to the anyTypeDefs to allow more types of data to be annotated and marked etc, and added a jaxb annotation to OriginalSource.sourcedObj

Lots of changes, but primarily:
Enabled the marshalling / unmarshalling of LSIDAuthority
Renamed the User table to UserAccount to avoid problems on SQLServer
Major refactoring of CacheStrategyGenerators so that the generic framework extends across all IIdentifiableEntities, allowing (but not requiring) the use of @Configurable and aop to inject custom cache strategy generators at runtime

reintroducing transient getters where required for cdm-remote; removing cast from inside getNomenclaturalReference(){}

Committing large number of changes relating to versioning implementation (#108)

Major changes to the cdmlib default term loading and initialization, plus indexing of some model entities as part of #476

Delete warnings in molecular

Fixed Hibernate mappings, JAXB annotations, and typos after model review.

Finished JAXB annotations for media, reference, and molecular packages

persistentTitleCache -> titleCache

Remove transient field from propOrder list

DnaSample Cloneable

Deserialize Cichorieae reference database

Performed project cleanup.

specimen

moved to model.media