EDIT

??

Import associated units in ABCD import

First changes

• fixed date parsing
  • fixed primer saving
  • added new parameters to test

• refactored dna parsing
  • added utility classes and person parser
  • adapted test
  • added parsing of more molecular parameters

• correctly cleaned up between test invocations

• added test for "ignoreAuthorship" option

• added test to ignore because data base conflicts for later tests

• added test to ignore because data base conflicts for later tests

• cleanup DB after test run

• added more ggbn ABCD parameters to import and test

• added more parameters to GGBN parser and test

cleanup code

try to fix ignored test #3279

set failing test to ignore

javadoc

clean up old AbcdImport test #3279

rename ABCD import tests

minor

minor cleanup

• implemented importing of DNA ABCD units
  • DNA sampled will be attached to already existing specimens
  • re-enabled tests

• added tests to ignore because other tests fail :-/

• re-enabled and fixed ABCD import tests(#4910)

upgrade unitils 3.3->3.4.2 #4636

• reverted temporary changes for titleCache generation

• temporarily disabled test

• added new test cases (still temporarily @Ignore)

• temporarily added test to ignore

• enhanced ggbn parsing
  • enhanced report

• added test to ignore temporarily

• added test to ignore temporarily

• added config option to choose mapping of ABCD UnitID
  • added config option to ignore authorship when matching taxa
  • added first draft of ggbn extension parsing

• added @Ignore to failing test -_-

• added ABCD import test for subspecies

add xslx test in io

minor

• change visibility of createTestDataSet to public

merge-update from trunk

• added abstract method createTestData() to CdmIntegrationalTest
  • method should be used for generatin test XML data sets
  • making it abstract and enforcing implementation in sub classes ensures that the same structure is used thus making it easier for the developer to find similar examples....

fixing test for SingleReadAlignment and removal of SpecAndObs_Sequence

• extended init test

rename Reference.authorTeam -> authorship #4432

rename Reference.authorTeam -> authorship #4432

rename Reference.authorTeam -> authorship #4432

adapt tests to 3.4

• extended ABCD import test to check for AgentBase

adapted tcs rdf and xml import, using apache jena for rdf import
tcs import for caryophylales
minor

fix Specimen import test

Ignore new Specimen Test as it fails to run in suite

• fixed the unnecessary creation of multiple references and taxon nodes in ABCD import
  • added new ABCD import test

-added CleanSweepInsertLoadStrategy to fix failing test

• refactored data structure for taxon identifications in ABCD import
  • trimming scientific names avoids creation of multiple taxa/taxon nodes
  • added check for number of taxon nodes to test

fixing bug for missing reference type

reverting back the cdm application configuration refatoring

renaming CdmApplicationController to CdmApplicationDefaultController

Merge with trunk

minor changes (remove logging of missing classification)

updated to trunk

handle name cache in normal explicit import

revert r19380

change DescriptionBase.descriptionElements to DescriptionBase.elements #3841

Major Update to cdmlib-3.3

• Restructuring of vaadin Editor

reintegrate branch patricia into trunk

merge trunk into cdmlib v3.3 branch

minor

merge trunk into cdm3.3 branch

minor cleanup

minor

implement tree index update

merged with trunk

new handling for subchars in feature sorter

merge trunk to branch cdm-3.3

merge trunk to cdm-3.3 branch

reintegrate branch from patricia (debug userinteraction) into trunk

Merged the latest changes from the trunk into the branch ui-gwt

implement sortIndex for TaxonNode and remove usedSynonym from addChildNode methods (#3508)

reintegration of branch "gwt-ui" concerning stream based excel import

*url fixed

merge branch to trunk

move DescriptionElementSource to description package #2345

rename FieldObservation -> FieldUnit #3351

adding recordBasis to SpecimenOrObservationBase and removing some DerivedUnit classes (all #3378) and adding kindOfUnit to SpecimenOrObservationBase (except for according termType and vocabulary) #3568.

implement abbreviated title for references #1551

Updating test data for publish flag (III) and removing dataset.dtd from cdmlib-ext

Remove GenBankAccession class, Spatium for EN_DASH and some minor stuff for v3.3

Add new Tests for ABCD imports

exchange modifier classes by DefinedTerm, add termtype to csv files, make term loader required constructor private

remove TdwgArea and add termType and idInVocabulary (#2998, #3478, #3479, #3539) in io (There is an open issue in CdmImporterTest)

*excel stream importer matches almost all columns
- still missing:-> taxon description of redlist specific fields
-> a better handling of dynamic fields

Merge trunk into CDM 3.3

change ICBN to ICNAFP #2864

StreamBased Import Work in progress

Still Todo: Mapping

Fixed: Generics Problems

Import according to NormalExplixitExcel Import

latest FdG developments and FeatureSorter

update ReferenceFactory method

move ProfilerController to cdmlib-persistence-test

moving class to test to fix depencency problem