Revision 0387c539
Added by Andreas Kohlbecker over 13 years ago
| modules/cdm_dataportal/cdm_dataportal.css | ||
|---|---|---|
| 323 | 323 |
font-style: italic; |
| 324 | 324 |
} |
| 325 | 325 |
|
| 326 |
.heterotypicSynonymyGroup li.footnotes, .homotypicSynonymyGroup li.footnotes{
|
|
| 327 |
margin-top: 10px; |
|
| 328 |
margin-left: 6px; |
|
| 329 |
padding-left: 6px; |
|
| 330 |
list-style: none; |
|
| 331 |
list-style-image: none; |
|
| 332 |
background-image: none; |
|
| 333 |
} |
|
| 334 |
|
|
| modules/cdm_dataportal/cdm_dataportal.module | ||
|---|---|---|
| 44 | 44 |
define('CDM_DATAPORTAL_DESCRIPTION_GALLERY_NAME', "description_gallery");
|
| 45 | 45 |
define('CDM_DATAPORTAL_MEDIA_GALLERY_NAME', "media_gallery");
|
| 46 | 46 |
define('CDM_DATAPORTAL_SEARCH_GALLERY_NAME', "search_gallery");
|
| 47 |
define('CDM_DATAPORTAL_DISPLAY_TAXON_RELATIONSHIPS', 'cdm_dataportal_display_taxon_relationships');
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|
| 48 |
define('CDM_DATAPORTAL_DISPLAY_NAME_RELATIONSHIPS', 'cdm_dataportal_display_name_relations');
|
|
| 49 |
define('CDM_DATAPORTAL_DISPLAY_TAXON_RELATIONSHIPS_DEFAULT', 1);
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|
| 50 |
define('CDM_DATAPORTAL_DISPLAY_NAME_RELATIONSHIPS_DEFAULT', 1);
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|
| 47 | 51 |
|
| 48 | 52 |
|
| 49 | 53 |
|
| ... | ... | |
| 751 | 755 |
the full nomenclatural reference.') |
| 752 | 756 |
); |
| 753 | 757 |
|
| 754 |
$form['cdm_dataportal_display_name_relations'] = array(
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|
| 758 |
$form[CDM_DATAPORTAL_DISPLAY_NAME_RELATIONSHIPS] = array(
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|
| 755 | 759 |
'#type' => 'checkbox', |
| 756 | 760 |
'#title' => t('Show name relations of accepted taxa on taxon page'),
|
| 757 |
'#default_value' => variable_get('cdm_dataportal_display_name_relations', 1),
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|
| 761 |
'#default_value' => variable_get(CDM_DATAPORTAL_DISPLAY_NAME_RELATIONSHIPS, CDM_DATAPORTAL_DISPLAY_NAME_RELATIONSHIPS_DEFAULT),
|
|
| 758 | 762 |
'#description' => t('')
|
| 759 | 763 |
); |
| 764 |
|
|
| 765 |
$form[CDM_DATAPORTAL_DISPLAY_TAXON_RELATIONSHIPS] = array( |
|
| 766 |
'#type' => 'checkbox', |
|
| 767 |
'#title' => t('Show taxon relations of accepted taxa on taxon page'),
|
|
| 768 |
'#default_value' => variable_get(CDM_DATAPORTAL_DISPLAY_TAXON_RELATIONSHIPS, CDM_DATAPORTAL_DISPLAY_TAXON_RELATIONSHIPS_DEFAULT), |
|
| 769 |
'#description' => t('')
|
|
| 770 |
); |
|
| 760 | 771 |
|
| 761 | 772 |
$form['cdm_dataportal_display_is_accepted_for'] = array( |
| 762 | 773 |
'#type' => 'checkbox', |
| modules/cdm_dataportal/classes/footnotemanager.php | ||
|---|---|---|
| 37 | 37 |
* |
| 38 | 38 |
* @param $footnoteListKey |
| 39 | 39 |
* @param $separator |
| 40 |
* @return unknown_type
|
|
| 40 |
* @return the rendered footnotelist
|
|
| 41 | 41 |
*/ |
| 42 | 42 |
public static function renderFootnoteList($footnoteListKey, $separator = ', '){
|
| 43 | 43 |
$out = ''; |
| modules/cdm_dataportal/classes/renderhints.php | ||
|---|---|---|
| 23 | 23 |
|
| 24 | 24 |
} |
| 25 | 25 |
|
| 26 |
public static function getfootnoteListKey(){
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| 26 |
public static function getFootnoteListKey(){
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|
| 27 | 27 |
return self::$footnoteListKey; |
| 28 | 28 |
} |
| 29 | 29 |
|
| 30 |
public static function setfootnoteListKey($key){
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| 31 |
return self::$footnoteListKey = $footnoteListKey;
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| 30 |
public static function setFootnoteListKey($key){
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|
| 31 |
self::$footnoteListKey = $key;
|
|
| 32 | 32 |
} |
| 33 | 33 |
|
| 34 | 34 |
public static function pushToRenderStack($pathelement){
|
| 35 |
return array_push(self::$renderStack, $pathelement);
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|
| 35 |
array_push(self::$renderStack, $pathelement); |
|
| 36 | 36 |
} |
| 37 | 37 |
|
| 38 | 38 |
|
| modules/cdm_dataportal/js/footnotes.js | ||
|---|---|---|
| 5 | 5 |
return '.'+$(object).attr('href').substr(1);
|
| 6 | 6 |
} |
| 7 | 7 |
|
| 8 |
function getFootnoteKeyClassName(object){
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|
| 9 |
return '.'+$(object).attr('href').substr(1).replace(/-/gi, '-key-');
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| 10 |
} |
|
| 11 |
|
|
| 8 | 12 |
$('a.footnote-key').mouseover(function(e){
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| 9 | 13 |
var fnClassName = getFootnoteClassName(this); |
| 14 |
var fnKeyClassName = getFootnoteKeyClassName(this); |
|
| 10 | 15 |
$('.footnote').css('background-color', 'transparent').css('background-color', 'transparent').removeClass('active');
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| 16 |
$('a.footnote-key').css('background-color', 'transparent').css('background-color', 'transparent').removeClass('active');
|
|
| 11 | 17 |
$(fnClassName).css('background-color', 'yellow');
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| 18 |
$(fnKeyClassName).css('background-color', 'yellow');
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|
| 12 | 19 |
} |
| 13 | 20 |
).mouseout(function(e){
|
| 14 | 21 |
var fnClassName = getFootnoteClassName(this); |
| 22 |
var fnKeyClassName = getFootnoteKeyClassName(this); |
|
| 15 | 23 |
$(fnClassName).not('.active').css('background-color', 'transparent');
|
| 24 |
$(fnKeyClassName).not('.active').css('background-color', 'transparent');
|
|
| 16 | 25 |
} |
| 17 | 26 |
).click(function(e){
|
| 18 | 27 |
var fnClassName = getFootnoteClassName(this); |
| 19 |
$('.footnote').css('background-color', 'transparent').removeClass('active');
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|
| 28 |
var fnKeyClassName = getFootnoteKeyClassName(this); |
|
| 29 |
$('.footnote').css('background-color', 'transparent').removeClass('active');
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| 30 |
$('a.footnote-key').css('background-color', 'transparent').removeClass('active');
|
|
| 20 | 31 |
$(fnClassName).css('background-color', 'yellow').addClass('active');
|
| 32 |
$(fnKeyClassName).css('background-color', 'yellow').addClass('active');
|
|
| 21 | 33 |
}); |
| 22 | 34 |
|
| 23 | 35 |
})); |
| modules/cdm_dataportal/theme/cdm_dataportal.common.theme | ||
|---|---|---|
| 10 | 10 |
* See http://www.mozilla.org/MPL/MPL-1.1.html for the full license terms. |
| 11 | 11 |
*/ |
| 12 | 12 |
|
| 13 |
define(FOOTNOTE_ANNOTATIONS, 'annotations'); |
|
| 14 |
|
|
| 13 | 15 |
/** |
| 14 | 16 |
* TODO if getting fragment from request is possible remove $_REQUEST['highlite'] HACK |
| 15 | 17 |
* NOT WORKING since fragments are not available to the server |
| ... | ... | |
| 81 | 83 |
/** |
| 82 | 84 |
* Almost any cdmObject may be annotated. Therefore we provide a generic way to display |
| 83 | 85 |
* as well as create or update annotations. |
| 86 |
* The following cdm classes are annotatable: |
|
| 87 |
* |
|
| 88 |
* DescriptionElementBase |
|
| 89 |
* EventBase |
|
| 90 |
* HomotypicalGroup |
|
| 91 |
* IdentifiableEntity |
|
| 92 |
* DescriptionBase |
|
| 93 |
* IdentifiableMediaEntity |
|
| 94 |
* Media |
|
| 95 |
* Sequence |
|
| 96 |
* TaxonBase |
|
| 97 |
* TaxonNameBase |
|
| 98 |
* TaxonomicTree |
|
| 99 |
* TermBase |
|
| 100 |
* LanguageStringBase |
|
| 101 |
* ReferencedEntityBase |
|
| 102 |
* NomenclaturalStatus |
|
| 103 |
* OriginalSourceBase |
|
| 104 |
* RelationshipBase |
|
| 105 |
* TypeDesignationBase |
|
| 106 |
* TaxonNode |
|
| 107 |
* WorkingSet |
|
| 84 | 108 |
* |
| 85 | 109 |
* TODO it should be configurable which objects can be annotated as this might differ in dataportals |
| 86 | 110 |
* |
| 87 | 111 |
*/ |
| 88 | 112 |
function theme_cdm_annotation($cdmBase){
|
| 89 | 113 |
|
| 90 |
$annotationUrl = cdm_compose_annotations_url($cdmBase); |
|
| 91 |
|
|
| 92 |
if($annotationUrl){
|
|
| 93 |
drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/cdm_annotations.js');
|
|
| 94 |
drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/jquery.form.js');
|
|
| 95 |
$annotationProxyUrl = url('cdm_api/proxy/'. urlencode($annotationUrl).'/cdm_annotation_content');
|
|
| 96 |
|
|
| 97 |
$out = ' <span class="annotation">'; |
|
| 98 |
$out .= '<span class="annotation_toggle" rel="'.$annotationProxyUrl.'">+</span>'; |
|
| 99 |
|
|
| 100 |
|
|
| 101 |
$out .= '<div class="annotation_box"></div>'; |
|
| 102 |
$out .= '</span>'; |
|
| 103 |
} |
|
| 114 |
// $annotationUrl = cdm_compose_annotations_url($cdmBase); |
|
| 115 |
// |
|
| 116 |
// if($annotationUrl){
|
|
| 117 |
// drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/cdm_annotations.js');
|
|
| 118 |
// drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/jquery.form.js');
|
|
| 119 |
// $annotationProxyUrl = url('cdm_api/proxy/'. urlencode($annotationUrl).'/cdm_annotation_content');
|
|
| 120 |
// |
|
| 121 |
// $out = ' <span class="annotation">'; |
|
| 122 |
// $out .= '<span class="annotation_toggle" rel="'.$annotationProxyUrl.'">+</span>'; |
|
| 123 |
// |
|
| 124 |
// |
|
| 125 |
// $out .= '<div class="annotation_box"></div>'; |
|
| 126 |
// $out .= '</span>'; |
|
| 127 |
// } |
|
| 128 |
$annotationUrl = cdm_compose_annotations_url($cdmBase); |
|
| 129 |
if($annotationUrl){
|
|
| 130 |
$annotationPager = cdm_ws_get($annotationUrl, null, null, null, true); |
|
| 131 |
foreach($annotationPager->records as $annotation){
|
|
| 132 |
$footnoteKey = FootnoteManager::addNewFootnote(RenderHints::getFootnoteListKey(), $annotation->text); |
|
| 133 |
$out .= (isset($out)? ',' : '') . theme('cdm_footnote_key', $footnoteKey);
|
|
| 134 |
} |
|
| 135 |
} |
|
| 104 | 136 |
|
| 105 | 137 |
return $out; |
| 106 | 138 |
|
| ... | ... | |
| 152 | 184 |
|
| 153 | 185 |
/* ============================ footnotes ============================= */ |
| 154 | 186 |
|
| 155 |
function theme_cdm_footnote_key($footnoteKey){
|
|
| 156 |
$out = '<a href="#footnote-'.$footnoteKey.'" class="footnote-key">'.$footnoteKey.'</a>'; |
|
| 187 |
function theme_cdm_footnote_key($footnoteKey, $highlightable=true){
|
|
| 188 |
$out = '<a href="#footnote-'.$footnoteKey.'" class="footnote-key footnote-key-'.$footnoteKey.'">'.$footnoteKey.'</a>';
|
|
| 157 | 189 |
return $out; |
| 158 | 190 |
} |
| 159 | 191 |
|
| ... | ... | |
| 163 | 195 |
return $out; |
| 164 | 196 |
} |
| 165 | 197 |
|
| 198 |
function theme_cdm_footnotes($footnoteListKey, $enclosingTag = 'span'){
|
|
| 199 |
|
|
| 200 |
$out = '<'.$enclosingTag.' class="footnotes footnotes-'.$footnoteListKey.'">' . FootnoteManager::renderFootnoteList($footnoteListKey) . '</'.$enclosingTag.'>'; |
|
| 201 |
return $out; |
|
| 202 |
} |
|
| 203 |
|
|
| 166 | 204 |
|
| 167 | 205 |
/* ============================ pager ============================= */ |
| 168 | 206 |
|
| modules/cdm_dataportal/theme/cdm_dataportal.descriptions.theme | ||
|---|---|---|
| 329 | 329 |
|
| 330 | 330 |
if(variable_get('cdm_dataportal_map_openlayers', 1)){
|
| 331 | 331 |
// embed into openlayers viewer |
| 332 |
$query_string .= '&img=false&legend=1&mlp=3'; |
|
| 332 |
if (variable_get('cdm_dataportal_geoservice_legend_on', TRUE)){
|
|
| 333 |
$query_string .= '&img=false&legend=1&mlp=3'; |
|
| 334 |
} |
|
| 335 |
$map_data_parameters->String = str_replace(': ', "%20", $map_data_parameters->String);
|
|
| 336 |
$map_data_parameters->String = str_replace('(', "", $map_data_parameters->String);
|
|
| 337 |
$map_data_parameters->String = str_replace(')', "", $map_data_parameters->String);
|
|
| 333 | 338 |
$map_tdwg_Uri = url($server. '/areas.php?' .$map_data_parameters->String, $query_string); |
| 334 | 339 |
$legend_url_font_size = variable_get('cdm_dataportal_geoservice_legend_font_size', 10);
|
| 335 | 340 |
$legend_url_font_style = variable_get('cdm_dataportal_geoservice_legend_font_style', 1);
|
| ... | ... | |
| 337 | 342 |
$legend_url_icon_width = variable_get('cdm_dataportal_geoservice_legend_icon_width', 35);
|
| 338 | 343 |
$legend_url_icon_height = variable_get('cdm_dataportal_geoservice_legend_icon_height', 15);
|
| 339 | 344 |
|
| 340 |
//#print($map_tdwg_Uri.'<br>');
|
|
| 345 |
print($map_tdwg_Uri.'<br>'); |
|
| 341 | 346 |
|
| 342 | 347 |
// get the respone from the map service |
| 343 | 348 |
$responseObj = cdm_ws_get($map_tdwg_Uri, null, null, "GET", TRUE); |
| modules/cdm_dataportal/theme/cdm_dataportal.name.theme | ||
|---|---|---|
| 123 | 123 |
|
| 124 | 124 |
} |
| 125 | 125 |
|
| 126 |
function theme_cdm_nameRelations($nameRelationships, $skipTypes = false){
|
|
| 126 |
function theme_cdm_nameRelationships($nameRelationships, $skipTypes = false){
|
|
| 127 | 127 |
|
| 128 |
if(!$nameRelationships){
|
|
| 129 |
return; |
|
| 130 |
} |
|
| 131 |
|
|
| 132 |
RenderHints::pushToRenderStack('nameRelationships');
|
|
| 133 |
$footnoteListKey = 'nameRelationships'; |
|
| 134 |
RenderHints::setFootnoteListKey($footnoteListKey); |
|
| 135 |
|
|
| 128 | 136 |
// group by relationship type |
| 129 | 137 |
$relationshipGroups = array(); |
| 130 | 138 |
foreach($nameRelationships as $nameRelationship){
|
| ... | ... | |
| 154 | 162 |
$block->content .= implode('; ', $relatedNames);
|
| 155 | 163 |
$out .= theme('block', $block);
|
| 156 | 164 |
} |
| 165 |
$out .= theme('cdm_footnotes', $footnoteListKey, 'div');
|
|
| 166 |
|
|
| 167 |
RenderHints::popFromRenderStack(); |
|
| 157 | 168 |
return $out; |
| 158 | 169 |
} |
| 159 | 170 |
|
| ... | ... | |
| 169 | 180 |
function theme_cdm_heterotypicSynonymyGroup($homotypicalGroup){
|
| 170 | 181 |
|
| 171 | 182 |
RenderHints::pushToRenderStack('heterotypicSynonymyGroup');
|
| 183 |
|
|
| 172 | 184 |
$out = ''; |
| 173 | 185 |
$out = '<ul class="heterotypicSynonymyGroup">'; |
| 174 |
|
|
| 186 |
$footnoteListKey = ( isset($homotypicalGroup[0]) ? $homotypicalGroup[0]->uuid : 'NULL'); |
|
| 187 |
RenderHints::setFootnoteListKey($footnoteListKey); |
|
| 188 |
|
|
| 175 | 189 |
$is_first_entry = true; |
| 176 | 190 |
$typeDesignations = null; |
| 177 | 191 |
foreach($homotypicalGroup as $synonym){
|
| 178 | 192 |
if($is_first_entry){
|
| 179 |
RenderHints::setfootnoteListKey($synonym->uuid); |
|
| 180 | 193 |
$is_first_entry = false; |
| 181 | 194 |
//$typeDesignations = cdm_ws_get(CDM_WS_NAME_TYPEDESIGNATIONS, $synonym->name->uuid); |
| 182 | 195 |
$typeDesignations = cdm_ws_get(CDM_WS_PORTAL_TAXON_NAMETYPEDESIGNATIONS, $synonym->uuid); |
| ... | ... | |
| 190 | 203 |
$out .= theme('cdm_typedesignations', $typeDesignations);
|
| 191 | 204 |
} |
| 192 | 205 |
|
| 206 |
$out .= theme('cdm_footnotes', $footnoteListKey, 'li');
|
|
| 193 | 207 |
$out .= '</ul>'; |
| 194 | 208 |
|
| 195 |
$out .= FootnoteManager::renderFootnoteList($firstSynonymUuid); |
|
| 196 | 209 |
|
| 197 | 210 |
RenderHints::popFromRenderStack(); |
| 198 | 211 |
return $out; |
| ... | ... | |
| 204 | 217 |
|
| 205 | 218 |
RenderHints::pushToRenderStack('homotypicSynonymyGroup');
|
| 206 | 219 |
|
| 207 |
$firstSynonymUuid = isset($prependedSynonyms[0]) ? $prependedSynonyms[0]->uuid : (isset($synonymList[0]) ? $synonymList[0]->uuid : 'NULL');
|
|
| 208 |
RenderHints::setfootnoteListKey($firstSynonymUuid);
|
|
| 220 |
$footnoteListKey = isset($prependedSynonyms[0]) ? $prependedSynonyms[0]->uuid : (isset($synonymList[0]) ? $synonymList[0]->uuid : 'NULL');
|
|
| 221 |
RenderHints::setFootnoteListKey($footnoteListKey);
|
|
| 209 | 222 |
|
| 210 | 223 |
if(! is_array($synonymList) || count($synonymList) == 0){
|
| 211 | 224 |
return; |
| ... | ... | |
| 228 | 241 |
$out .= theme('cdm_typedesignations', $typeDesignations);
|
| 229 | 242 |
} |
| 230 | 243 |
|
| 244 |
$out .= theme('cdm_footnotes', $footnoteListKey, 'li');
|
|
| 231 | 245 |
$out .= '</ul>'; |
| 232 |
$out .= FootnoteManager::renderFootnoteList($firstSynonymUuid); |
|
| 233 | 246 |
|
| 234 | 247 |
RenderHints::popFromRenderStack(); |
| 235 | 248 |
return $out; |
| ... | ... | |
| 397 | 410 |
$out .= $separator.$partHtml; |
| 398 | 411 |
} |
| 399 | 412 |
} |
| 400 |
|
|
| 401 |
return $out.'</span>'; |
|
| 413 |
$out .= '</span>'; |
|
| 414 |
|
|
| 415 |
// add annotations |
|
| 416 |
$out .= theme('cdm_annotation', $taxonName);
|
|
| 417 |
|
|
| 418 |
return $out; |
|
| 402 | 419 |
} |
| 403 | 420 |
|
| 404 | 421 |
/** |
| modules/cdm_dataportal/theme/cdm_dataportal.page.theme | ||
|---|---|---|
| 140 | 140 |
$addAcceptedTaxon = !variable_get('cdm_dataportal_nomref_in_title', CDM_DATAPORTAL_NOMREF_IN_TITLE);
|
| 141 | 141 |
$out .= theme('cdm_taxon_page_synonymy', $taxon, $addAcceptedTaxon);
|
| 142 | 142 |
|
| 143 |
if(variable_get('cdm_dataportal_display_name_relations', 1)){
|
|
| 144 |
|
|
| 145 |
$nameRelationships = cdm_ws_get(CDM_WS_PORTAL_TAXON_NAMERELATIONS, $taxon->uuid); |
|
| 146 |
// TODO is it correct to skip relationsFromThisName since all relationships are to be understood as 'is .... of' |
|
| 147 |
if(variable_get('cdm_dataportal_name_relations_skiptype_basionym', 1)){
|
|
| 148 |
$skip = array(UUID_BASIONYM); |
|
| 149 |
} |
|
| 150 |
$out .= theme('cdm_nameRelations', $nameRelationships, $skip);
|
|
| 151 |
} |
|
| 152 | 143 |
$out .= '</div>'; |
| 153 | 144 |
} |
| 154 | 145 |
|
| ... | ... | |
| 192 | 183 |
|
| 193 | 184 |
RenderHints::pushToRenderStack('taxon_page_synonymy');
|
| 194 | 185 |
$synomymie = cdm_ws_get(CDM_WS_PORTAL_TAXON_SYNONYMY, $taxon->uuid); |
| 195 |
$taxonRelationships = cdm_ws_get(CDM_WS_PORTAL_TAXON_RELATIONS, $taxon->uuid); |
|
| 196 | 186 |
$skip = array(UUID_BASIONYM); |
| 197 | 187 |
|
| 198 | 188 |
if($addAcceptedTaxon){
|
| ... | ... | |
| 218 | 208 |
$out .= theme('cdm_heterotypicSynonymyGroup', $homotypicalGroup);
|
| 219 | 209 |
} |
| 220 | 210 |
} |
| 221 |
|
|
| 222 |
$out .= theme('cdm_taxonRelations', $taxonRelationships, $skip);
|
|
| 211 |
|
|
| 212 |
if(variable_get(CDM_DATAPORTAL_DISPLAY_NAME_RELATIONSHIPS, CDM_DATAPORTAL_DISPLAY_NAME_RELATIONSHIPS_DEFAULT)){
|
|
| 213 |
|
|
| 214 |
$nameRelationships = cdm_ws_get(CDM_WS_PORTAL_TAXON_NAMERELATIONS, $taxon->uuid); |
|
| 215 |
// TODO is it correct to skip relationsFromThisName since all relationships are to be understood as 'is .... of' |
|
| 216 |
if(variable_get('cdm_dataportal_name_relations_skiptype_basionym', 1)){
|
|
| 217 |
$skip = array(UUID_BASIONYM); |
|
| 218 |
} |
|
| 219 |
$out .= theme('nameRelationships', $nameRelationships, $skip);
|
|
| 220 |
} |
|
| 221 |
|
|
| 222 |
if(variable_get(CDM_DATAPORTAL_DISPLAY_TAXON_RELATIONSHIPS, CDM_DATAPORTAL_DISPLAY_TAXON_RELATIONSHIPS_DEFAULT)){
|
|
| 223 |
$taxonRelationships = cdm_ws_get(CDM_WS_PORTAL_TAXON_RELATIONS, $taxon->uuid); |
|
| 224 |
$out .= theme('cdm_taxonRelationships', $taxonRelationships);
|
|
| 225 |
} |
|
| 226 |
|
|
| 223 | 227 |
RenderHints::popFromRenderStack(); |
| 224 | 228 |
return $out; |
| 225 | 229 |
} |
| modules/cdm_dataportal/theme/cdm_dataportal.taxon.theme | ||
|---|---|---|
| 64 | 64 |
* @param unknown_type $taxonRelationships |
| 65 | 65 |
* @return unknown |
| 66 | 66 |
*/ |
| 67 |
function theme_cdm_taxonRelations($taxonRelationships){
|
|
| 67 |
function theme_cdm_taxonRelationships($taxonRelationships){
|
|
| 68 | 68 |
|
| 69 | 69 |
if(!$taxonRelationships){
|
| 70 | 70 |
return; |
| 71 | 71 |
} |
| 72 |
|
|
| 73 |
RenderHints::pushToRenderStack('taxonRelationships');
|
|
| 74 |
$footnoteListKey = 'taxonRelationships'; |
|
| 75 |
RenderHints::setFootnoteListKey($footnoteListKey); |
|
| 72 | 76 |
|
| 73 |
_add_js_cluetip(); |
|
| 74 |
|
|
| 75 |
// aggregate misapplied names having the same fullname: |
|
| 76 | 77 |
$misapplied = array(); |
| 78 |
$joinedAuthorTeams = array(); |
|
| 79 |
|
|
| 80 |
// aggregate misapplied names having the same fullname: |
|
| 77 | 81 |
foreach($taxonRelationships as $taxonRelation){
|
| 78 | 82 |
if(true || $taxonRelation->type->uuid == UUID_MISAPPLIED_NAME_FOR || $taxonRelation->type->uuid == UUID_INVALID_DESIGNATION_FOR ){
|
| 79 | 83 |
|
| ... | ... | |
| 87 | 91 |
|
| 88 | 92 |
// collect all authors for this fullname |
| 89 | 93 |
if(isset($authorteam)){
|
| 90 |
$misapplied[$name]['authorteam'][$authorteam] = ' <span class="sensu cluetip no-print" title="|sensu '.htmlspecialchars(theme('cdm_reference',$taxonRelation->fromTaxon->sec )).'|">sensu '
|
|
| 91 |
.$authorteam.'</span>' |
|
| 92 |
.'<span class="reference only-print">sensu '.theme('cdm_reference', $taxonRelation->fromTaxon->sec ).'</span>';
|
|
| 94 |
$misapplied[$name]['authorteam'][$authorteam] = ''; |
|
| 95 |
$joinedAuthorTeams[$authorteam] = 'sensu '.theme('cdm_reference', $taxonRelation->fromTaxon->sec);
|
|
| 93 | 96 |
} |
| 94 | 97 |
|
| 95 | 98 |
} |
| 96 | 99 |
} |
| 100 |
|
|
| 101 |
// sort the joinedAuthorTeams and create footnotes and footnotekeys |
|
| 102 |
ksort($joinedAuthorTeams); |
|
| 103 |
foreach($joinedAuthorTeams as $authorteam=>$sensuCitation){
|
|
| 104 |
$footnoteKey = FootnoteManager::addNewFootnote($footnoteListKey, $sensuCitation); |
|
| 105 |
$joinedAuthorTeams[$authorteam] = '<span class="sensu">sensu '.$authorteam. theme('cdm_footnote_key', $footnoteKey).'</span>';
|
|
| 106 |
} |
|
| 97 | 107 |
|
| 98 | 108 |
// generate output |
| 99 | 109 |
$out = '<ul class="misapplied">'; |
| 110 |
|
|
| 100 | 111 |
foreach($misapplied as $misapplied_name){
|
| 112 |
|
|
| 101 | 113 |
$out .= '<li class="synonym">'.$misapplied_name['out'] . " "; |
| 102 |
// sorting authors |
|
| 114 |
// fill authors the renderedFootnoteKey and sorting 'em |
|
| 115 |
foreach($misapplied_name['authorteam'] as $authorteam=>&$renderedFootnoteKey) {
|
|
| 116 |
$renderedFootnoteKey = $joinedAuthorTeams[$authorteam]; |
|
| 117 |
} |
|
| 103 | 118 |
if(isset($misapplied_name['authorteam'])){
|
| 104 | 119 |
ksort($misapplied_name['authorteam']); |
| 105 | 120 |
$out .= join('; ', $misapplied_name['authorteam']);
|
| 106 | 121 |
} |
| 107 | 122 |
$out .= '</li>'; |
| 123 |
|
|
| 108 | 124 |
} |
| 109 | 125 |
$out .= '</ul>'; |
| 126 |
|
|
| 127 |
$out .= theme('cdm_footnotes', $footnoteListKey, 'div');
|
|
| 128 |
RenderHints::popFromRenderStack(); |
|
| 110 | 129 |
return $out; |
| 111 | 130 |
} |
| 112 | 131 |
|
Also available in: Unified diff
footnotes for taxon names in the synonymy page #392 and replacing "senu bubbles" #391