Activity
From 06/28/2024 to 07/27/2024
07/26/2024
- 01:55 PM EDIT Revision 81a6844a (cdmlib): ref #10563: code cleaning and fix hashcode
- 12:08 PM EDIT Revision 86ed0d1d (cdmlib): ref #10559: remove whitespace
- 11:53 AM EDIT bug #10563 (In Progress): Specimen selection dialog should show a short description column
- As a first implementation a new column containing collectorsNumber + " - " + specimen identifier + " - " + collection...
- 11:53 AM EDIT Revision 5fe19a0e (taxeditor): ref #10563: add column with short label
- 11:52 AM EDIT Revision fc35a521 (cdmlib): ref #10563: add short label for specimen
- 11:39 AM EDIT Revision b404c372 (cdmlib): ref #10559: adapt test
- 11:13 AM EDIT Revision 9b7995ff (cdmlib): ref #10559: subname should be without author
- 10:19 AM EDIT Revision 8a71ea58 (cdmlib): minor
- 09:54 AM EDIT Revision b32d6e76 (cdmlib): ref #10559: adapt test to html tags for subname
07/25/2024
- 02:16 PM EDIT bug #10559 (Resolved): html formatting for sub names
- This should be fixed.
- 02:16 PM EDIT Revision 30165ca8 (cdmlib): ref #10559: add html tags to subname
- 02:10 PM EDIT bug #10572 (Resolved): Specimen are added to a taxon of not selected classification
- I tested with C. macedonica and C. graeca and all specimen are moved to the taxa already in centaurea classification ...
- 11:33 AM EDIT bug #10572 (In Progress): Specimen are added to a taxon of not selected classification
- Need some more time to test all configuration possibilities
- 10:40 AM EDIT bug #10572: Specimen are added to a taxon of not selected classification
- Konstantina Koutroumpa wrote in #note-2:
> What about Centaurea macedonica? All 15 specimens are determined as C. mac... - 09:48 AM EDIT bug #10572: Specimen are added to a taxon of not selected classification
- What about Centaurea macedonica? All 15 specimens are determined as C. macedonica but they were all imported in the F...
- 09:05 AM EDIT bug #10572 (Resolved): Specimen are added to a taxon of not selected classification
- The problem appeared if the determination of the specimen was a infraspecific taxon and the parent a taxon contained ...
- 02:00 PM EDIT Revision 703362e4 (cdmlib): ref #10572: some more adaptions, fix creation of new nodes - continue
- 01:20 PM EDIT bug #10573: type [icon] from the literature cited without multimedia item (PhycoBank, Portal)
- Yes, it ist is related to bug #10426. For PhycoBank this is a new bug, because the display was correct.
- 01:16 PM EDIT bug #10573: type [icon] from the literature cited without multimedia item (PhycoBank, Portal)
- maybe this is a duplicate for #10426
- 12:10 PM EDIT bug #10573: type [icon] from the literature cited without multimedia item (PhycoBank, Portal)
- The error occurs (25 July 2024 12:10) on the name-page for Mallomonopsis elliptica Matv.
URL: https://www.phycobank.... - 11:56 AM EDIT bug #10573 (New): type [icon] from the literature cited without multimedia item (PhycoBank, Portal)
- Example: http://phycobank.org/104821
If icons/figures are cited as types, PhycoBank (currently >99%) cites the image... - 11:16 AM EDIT Revision b6c5b93b (cdmlib): ref #10572: some more adaptions
- 09:03 AM EDIT Revision a1adb4c6 (cdmlib): ref #10572: fix handling of infraspecific taxa in abcd import
07/24/2024
- 12:34 PM EDIT Revision 4b796078 (cdmlib): ref #10418: fix ws if parameters missing
- 12:32 PM EDIT bug #10418: Thumbnail loading takes very long in taxon search
- Andreas Müller wrote in #note-17:
> > Here the problem was, that the images weren't available anymore. I adapted the... - 09:45 AM EDIT Revision 0689d9ab (cdm-dataportal): fix not shown image thumbnails
07/23/2024
- 09:39 AM EDIT Revision f81e36c3 (cdm-dataportal): revert index change
- 09:10 AM EDIT Revision 8679af95 (cdm-dataportal): adapt tests to adapted images
07/22/2024
- 05:07 PM EDIT bug #10572 (Resolved): Specimen are added to a taxon of not selected classification
- An via ABCD imported specimen sometimes added to a taxon belonging to another classification than the selected one.
... - 04:59 PM EDIT Revision c3e1c70d (cdmlib): ref #10568: fix NPE
- 04:15 PM EDIT bug #10549 (Discussed): Move exsiccatum to field unit
- AM:
in one of the last user meeting we discussed that the exsiccatum information in type designation formatting sho... - 02:27 PM EDIT discussion #10403: Should syn. sec. be part of the homotypical group instead of single synonym?
- WGB + NaK:
Hallo,
ich hatte mir folgendes überlegt, zu schreiben, Fragen zu Deinem Ausgabevorschlag unten in rot:
=... - 01:58 PM EDIT bug #10568 (Resolved): Manifest files should not be shown in dataportal
- This should be fixed, please review. I will add an example to the integration reference DB, the example is Centaurea ...
- 01:57 PM EDIT Revision 822b4438 (cdmlib): ref #10568: filter for mimetype
- 01:54 PM EDIT Revision 3bf7d4f4 (cdmlib): ref #10568: add mimetype for json files
- 01:22 PM EDIT Revision 713bc024 (cdmlib): ref #10568: filter media with json at the end of uri (manifest files)
07/21/2024
- 04:16 PM EDIT feature request #3369 (Rejected): Lucene search factory or builder implemented
- There is no such field in eu.etaxonomy.cdm.config.Configuration anymore and also not elsewhere in the code. Also it d...
- 04:07 PM EDIT feature request #10069 (In Progress): Upgrade hibernate search and lucene to hs6+ and lucene 8+
07/19/2024
- 11:01 AM EDIT bug #10567: Fix copyright sign for all copyright informations
- It looks good to me too.
- 10:35 AM EDIT bug #10567 (Closed): Fix copyright sign for all copyright informations
- To me it looks correct now. Konstantina, maybe you also want to have a look? The link to the adapted image(s) is here...
- 08:45 AM EDIT bug #10567: Fix copyright sign for all copyright informations
- Andreas Müller wrote in #note-4:
> Do you have an example image for reviewing?
On test cichorieae I added for the... - 10:29 AM EDIT Revision 94cc88ce (cdm-vaadin): ref #10505 adapt highlite->highlight in vaadin (cont.)
- 10:28 AM EDIT bug #10505 (Closed): Rename synonymy parameter highlite -> highlight
- Upps, sorry, for some reason my workspace was not fully up-to-date.
But at least, this way I found some more appeara... - 10:23 AM EDIT bug #10505: Rename synonymy parameter highlite -> highlight
- Andreas Müller wrote in #note-14:
> Katja Luther wrote in #note-13:
> > Andreas Müller wrote in #note-12:
> > > In...
07/18/2024
- 07:52 PM EDIT Revision 743e7691 (cdmlib): cleanup
- 06:38 PM EDIT bug #10567: Fix copyright sign for all copyright informations
- Do you have an example image for reviewing?
- 04:37 PM EDIT bug #10567 (Resolved): Fix copyright sign for all copyright informations
- This should be fixed.
- 04:34 PM EDIT Revision 4bdb8102 (cdmlib): ref #10567: fix copyright handling
- 02:47 PM EDIT Revision 89d2b1ab (cdmlib): cleanup
- 02:46 PM EDIT Revision bd2ee0c9 (cdmlib): fix typo (standart->standard)
- 12:40 PM EDIT bug #10571 (New): Improve character data in details page
- Currently the details page for specimen shows the character data in a table which looks ok as long as the labels and ...
- 12:30 PM EDIT bug #10570 (New): Fix deduplication of authors in ABCD import
- After importing specimen via ABCD import, the database is flooded with duplicated authors. The ABCD import need to de...
- 12:30 PM EDIT bug #10505: Rename synonymy parameter highlite -> highlight
- Katja Luther wrote in #note-13:
> Andreas Müller wrote in #note-12:
> > In Cichorieae_NamePageTest the word highlit... - 11:18 AM EDIT bug #10505: Rename synonymy parameter highlite -> highlight
- Andreas Müller wrote in #note-12:
> In Cichorieae_NamePageTest the word highlite is still used 2x as it is used as p... - 10:53 AM EDIT bug #10505: Rename synonymy parameter highlite -> highlight
- In Cichorieae_NamePageTest the word highlite is still used 2x as it is used as php-class name. Can you please adapt t...
- 12:28 PM EDIT bug #10569 (New): Improvements for point maps
- There are two requirements for point maps:
1. Different symbols or colors of the symbol for co-ordinates that do n... - 11:31 AM EDIT bug #10418: Thumbnail loading takes very long in taxon search
- Andreas Müller wrote in #note-18:
> Katja Luther wrote in #note-15:
> > The algorithm to get the best matching repres... - 10:38 AM EDIT bug #10418: Thumbnail loading takes very long in taxon search
- Katja Luther wrote in #note-15:
> The algorithm to get the best matching representation of a file seems to be not de... - 10:37 AM EDIT bug #10418: Thumbnail loading takes very long in taxon search
- > Here the problem was, that the images weren't available anymore. I adapted the uris and now the search is much fast...
- 10:47 AM EDIT Revision c0da2e91 (cdm-vaadin): ref #10505 adapt highlite->highlight in vaadin
- 10:46 AM EDIT Revision cbb14b09 (cdmlib): cleanup
- 10:46 AM EDIT Revision 3da79d69 (cdmlib): ref #10505 adapt highlite->highlight in WfoBackboneExport
07/17/2024
- 11:06 PM EDIT Revision dc4d5024 (cdmlib): cleanup
- 10:29 PM EDIT bug #10566: Implement a webservice for checking new scans for existing specimen
- Why should this be a webservice
- 05:28 PM EDIT Revision cba43f73 (cdm-dataportal): fix link handling
- 05:20 PM EDIT Revision 63a0093f (cdmlib): ref #10525: Normalized output score
- 03:26 PM EDIT bug #10559: html formatting for sub names
- I guess sub names are nameUsedInSource for sec references
- 12:13 AM EDIT Revision 896535f3 (cdmlib): cleanup
07/16/2024
- 06:21 PM EDIT Revision 42606af6 (cdmlib): reenable OaiPmhViewTest
- 03:42 PM EDIT bug #10568 (Resolved): Manifest files should not be shown in dataportal
- The manifest files coming with the import of specimen, but should not be shown in dataportal.
We decided that it m... - 02:34 PM EDIT bug #10567 (Closed): Fix copyright sign for all copyright informations
- The copyright sign is only shown, if the copyright information comes from the cdm db, but should be shown also for th...
- 02:17 PM EDIT bug #10566 (New): Implement a webservice for checking new scans for existing specimen
- If already imported specimens get new herbarium scans we need funtionality to call a webservice getting the informati...
- 02:13 PM EDIT bug #10565 (New): Refresh after deleting media
- After deleting a media from a taxon, the media view is not updated and the deleted media is still shown also after save.
- 02:12 PM EDIT bug #10564 (New): Move media to another taxon
- Currently the move operation is available only for factual data but not for media. We need this functionality also fo...
- 02:07 PM EDIT bug #10563 (In Progress): Specimen selection dialog should show a short description column
- In the specimen selection dialog of the matrix currently the titlecache is used as identification column, but sometim...
- 10:09 AM EDIT Revision 12f33203 (cdmlib): ref #10525: corrected decimal format in tests
07/15/2024
- 03:33 PM EDIT Revision 92a81375 (cdmlib): ref #10525: adjusted rate for author comparison
- 03:32 PM EDIT bug #10418: Thumbnail loading takes very long in taxon search
- The algorithm to get the best matching representation of a file seems to be not deterministic. Running the search sev...
- 10:40 AM EDIT Revision 42c67791 (cdm-dataportal): ref #10505: adapt test
07/12/2024
- 04:21 PM EDIT Revision 18517417 (cdmlib): remove check for reference
- 04:15 PM EDIT Revision cb8cf29c (cdmlib): comment not committed constant
- 01:59 PM EDIT Revision 3b346353 (cdmlib): cleanup
- 01:47 PM EDIT bug #10562 (Resolved): CdmLight and ColDP must not contain names not included in the synonymy and not linked directly
- Reopen only to handle the related issue and to check if the E+M ColDP export issue is also fully solved by the fix.
- 01:02 PM EDIT bug #10562 (Closed): CdmLight and ColDP must not contain names not included in the synonymy and not linked directly
- The code looks good, I checked some of the names mentioned in mail of WB as names of homotypic group of former homony...
- 01:41 PM EDIT Revision 1bb208c0 (cdmlib): adapt cdmlight test
- 01:21 PM EDIT Revision 679c5c2f (cdmlib): cleanup and remove unused parameter boolean acceptedTaxon
- 01:08 PM EDIT bug #10559: html formatting for sub names
- This seems to be a problem of the taggedText, because every part of the taggedText with type name should have html ta...
- 12:21 PM EDIT bug #10505 (Resolved): Rename synonymy parameter highlite -> highlight
- Katja Luther wrote in #note-10:
> I don't know, if we really need a relinking to highlight, actually I don't know how... - 11:56 AM EDIT bug #10505: Rename synonymy parameter highlite -> highlight
- I don't know, if we really need a relinking to highlight, actually I don't know how to change the link parameter.
Wh... - 11:31 AM EDIT bug #10505: Rename synonymy parameter highlite -> highlight
- all appearances in code are changed to highlight.
- 12:19 PM EDIT Revision 37220303 (cdm-dataportal): ref #10505: use value of highlite as value for highlight
- 11:31 AM EDIT Revision 912d3f24 (cdm-dataportal): ref #10505: change highlite to highlight
- 10:10 AM EDIT Revision 90bbd102 (cdmlib): adapt test
- 08:46 AM EDIT Revision a66d1799 (cdmlib): adapt test to removed = for accepted taxon
07/11/2024
- 10:59 PM EDIT Revision 2871dbb2 (cdmlib): cleanup
- 10:59 PM EDIT Revision 65aafef2 (cdmlib): ref #10562 remove loosely coupled names from CDM light and ColDP export (cont.)
- 06:58 PM EDIT bug #10562 (Resolved): CdmLight and ColDP must not contain names not included in the synonymy and not linked directly
- Should be fixed. Please review.
Tests exist. - 05:36 PM EDIT bug #10562 (Resolved): CdmLight and ColDP must not contain names not included in the synonymy and not linked directly
- During exports it was observed that names related to an earlier homonym which was not part of the synonymy but only r...
- 06:54 PM EDIT Revision d8ef2fd7 (cdmlib): cleanup
- 06:53 PM EDIT Revision fcc84d73 (cdmlib): ref #10562 remove loosely coupled names from CDM light export
- 05:13 PM EDIT Revision d3dfa18f (cdmlib): adapt homotypic group test (cont.)
- 05:07 PM EDIT Revision 590d9ae0 (cdmlib): adapt homotypic group test
- 04:13 PM EDIT Revision 281070c2 (cdmlib): cleanup
- 03:18 PM EDIT Revision d7310050 (cdmlib): cleanup
- 02:20 PM EDIT Revision 7ad76f0d (cdmlib): ref #10488: fix handling of not unique citations and smaller
- 02:15 PM EDIT bug #10561 (New): Use unique citation for all places where citations are used.
- from #10488
We have to add the unique citation should also be used in HomotypicGroup.homotypicGroupWithSec/homotyop... - 02:13 PM EDIT feature request #10488 (Closed): Distinguish equal short citations by adding a, b, c,... to the year in cdmlight (and add long citation)
- I would move the last issue (note-#11) in a new ticket and close this ticket, because the main work on how to build t...
- 01:47 PM EDIT feature request #10488: Distinguish equal short citations by adding a, b, c,... to the year in cdmlight (and add long citation)
- We have to add the unique citation should also be used in HOmotypicGroup.homotypicGroupWithSec/homotyopicGroupWithout...
- 09:34 AM EDIT feature request #10488: Distinguish equal short citations by adding a, b, c,... to the year in cdmlight (and add long citation)
- Additional requirement: "j" should not be a valid index. Implemented commit:7f0fcd3c3f2
- 02:10 PM EDIT bug #10520 (Closed): Support non-default language for new taxon pages (start with feature labels)
- Also checked on eFloraMex and all features are correctly displayed in Spanish, so I think we can close this ticket.
- 02:08 PM EDIT bug #10129 (Resolved): Allow to create MediaSpecimen when creating specimen for a type designation
- 10:09 AM EDIT Revision 2645b960 (cdmlib): add unique citation to homotypic group string
- 09:59 AM EDIT Revision aca9717b (cdmlib): ref #10488 handle unique index in in-references correctly
- 09:33 AM EDIT Revision 7e0ee4c1 (cdmlib): cleanup
- 09:33 AM EDIT Revision 7f0fcd3c (cdmlib): ref #10488 exclude j as valid index
07/10/2024
- 05:30 PM EDIT Revision a06f076f (cdm-dataportal): fix show specimen identifier string
- 02:59 PM EDIT Revision 7d2b37e3 (cdm-dataportal): fix show specimen identifier string
- 12:09 PM EDIT discussion #10547: [Discussion] Remove IsoXXX type designation status from list of "designated by" status
- WGB:
weiß nicht, ob ich das schon gesagt hatte: Es ist zwar nützlich, die (z.B.) Isolectotypen, die in der designa... - 09:14 AM EDIT bug #10560 (New): Make output of identifier type configurable
- Currently the output of the identifier type is not configurable in cdmLight, but for "Taxon" publications it is neede...
07/09/2024
- 01:32 PM EDIT Revision f30aef0b (cdmlib): cleanup
07/08/2024
- 10:56 AM EDIT bug #10559 (Resolved): html formatting for sub names
- The html tags for the sub part of names is missing in cdmlight export.
mail WB:
ich implementiere gerade die Au... - 10:42 AM EDIT feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- * basionym authors and ex authors can be excluded from the search
* csv output includes all parameters as the json ou... - 09:05 AM EDIT Revision 85a6d5aa (cdmlib-apps): adapt app-import to v5.45
07/05/2024
- 09:37 PM EDIT Revision dd6d6b12 (taxeditor): Merge branch 'hotfix/5.44.1'
- 09:06 PM EDIT Revision 033bee01 (taxeditor): ref #10530: fix term combo - clean up
- 09:02 PM EDIT Revision 76b93607 (taxeditor): ref #10530: fix term combo - clean up
- 09:01 PM EDIT Revision 45a6aca6 (taxeditor): ref #10530: fix term combo
- 08:49 PM EDIT Revision 9ef8e99b (taxeditor): Updated version in pom / project files to taxeditor version : 5.44.1 and cdmlib version : 5.44.0
- 08:47 PM EDIT Revision 78c188ca (taxeditor): ref #10530: fix term combo
- 02:52 PM EDIT Revision 3f155f8b (cdmlib): ref #10525: author comparison fix
- 01:58 PM EDIT bug #10418: Thumbnail loading takes very long in taxon search
- Media handling during the simple search is a little bit strange, in a first step the method _load_media_for_taxon() i...
- 12:36 PM EDIT Revision bc1e6280 (cdm-dataportal): adapt test
- 12:12 PM EDIT bug #10557 (New): Avoid creating empty annotations in phycobank
- In phycobank empty annotations are not removed before saving. This creates large numbers of empty annotations in the ...
- 12:01 PM EDIT task #10538 (Closed): Remove empty annotation type from selection list in vaadin
- The Caveats issue is not realy part of the ticket description and can be discussed via mail. So I close this ticket.
- 11:54 AM EDIT feature request #10529 (Closed): Type of a genus not clickable in PhycoBank portal
- 11:32 AM EDIT feature request #10529: Type of a genus not clickable in PhycoBank portal
- Thanks, perfectly solved. The ticket can be closed.
- 11:53 AM EDIT bug #10555 (Resolved): Sorting for doubtful taxa is not correct
- Applied in changeset commit:cdmlib|9b2906c59b12a9323d661f9886602bc962082308.
- 11:49 AM EDIT Revision 9b2906c5 (cdmlib): fix #10555: use nameTitleCache for sorting in rankAndNameComparator
- 11:26 AM EDIT feature request #10552: Change default anntotation type for Vaadin submitters to internal (PhycoBank)
- For Vaadin curator the featurer request is perfectly solved.
There is one point for Vaadin submitters: they get on... - 11:26 AM EDIT bug #10181: Search images do not show thumbnails
- Maybe this is a problem of images which are turned for display. This is the case for https://cichorieae.e-taxonomy.ne...
- 11:22 AM EDIT Revision 9b30a1af (cdm-dataportal): revert ignore
- 11:08 AM EDIT bug #10540 (Closed): A Cichorieae source proxy is not loaded correctly by dto loading
- 11:07 AM EDIT bug #10540: A Cichorieae source proxy is not loaded correctly by dto loading
- Andreas Müller wrote in #note-5:
> Please also check if the portal can be switched fully to dto loading now?
The por... - 11:04 AM EDIT bug #10540: A Cichorieae source proxy is not loaded correctly by dto loading
- Please also check if the portal can be switched fully to dto loading now?
- 10:39 AM EDIT Revision f5f06e38 (cdm-dataportal): revert changes to not load media again
07/04/2024
- 05:50 PM EDIT Revision 0012a1d8 (cdm-server): Merge branch 'release/5.44.0' into develop
- 05:50 PM EDIT Revision b08e7b20 (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 05:49 PM EDIT Revision e7a6657f (cdm-server): updating poms for branch'release/5.44.0' with non-snapshot versions
- 05:40 PM EDIT Revision b0404c2c (cdm-webapp): Merge branch 'release/5.44.0' into develop
- 05:40 PM EDIT Revision 5c8aa43e (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 05:39 PM EDIT Revision 0dfb70b8 (cdm-webapp): updating poms for branch'release/5.44.0' with non-snapshot versions
- 05:39 PM EDIT Revision 638ceacf (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.44.0
- 05:39 PM EDIT Revision 8f5edd58 (taxeditor): Merge branch 'release/5.44.0' into develop
- 05:39 PM EDIT Revision dbe33e8d (taxeditor): Merge branch 'release/5.44.0'
- 05:36 PM EDIT Revision a3f608e1 (cdm-dataportal): Merge branch 'release/5.44.0' into develop
- 05:36 PM EDIT Revision 0f27c0fa (cdm-dataportal): updating poms for branch'release/5.44.0' with non-snapshot versions
- 05:35 PM EDIT Revision 69d40456 (cdm-dataportal): release-preparation: production level css
- 05:35 PM EDIT Revision a1e3643d (cdm-vaadin): Merge branch 'release/5.44.0' into develop
- 05:35 PM EDIT Revision 0df14801 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 05:31 PM EDIT Revision 4496e385 (cdm-vaadin): updating poms for branch'release/5.44.0' with non-snapshot versions
- 05:31 PM EDIT Revision ba90cf6d (cdm-vaadin): jenkins bumping cdmlib.version to 5.44.0
- 05:30 PM EDIT Revision 7eddb62e (cdmlib): Updating develop poms back to pre merge state
- 05:30 PM EDIT Revision 18b5119e (cdmlib): Merge branch 'master' into develop
- 05:30 PM EDIT Revision f4a4e766 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 05:30 PM EDIT Revision 09c63fd5 (cdmlib): Merge branch 'release/5.44.0'
- 05:25 PM EDIT feature request #10552: Change default anntotation type for Vaadin submitters to internal (PhycoBank)
- Please review.
- 04:26 PM EDIT feature request #10552 (Resolved): Change default anntotation type for Vaadin submitters to internal (PhycoBank)
- 02:50 PM EDIT feature request #10552: Change default anntotation type for Vaadin submitters to internal (PhycoBank)
- "internal" it better than "technical" -> if internal is available this is the more appropriate term, thanks
- 09:31 AM EDIT feature request #10552 (Resolved): Change default anntotation type for Vaadin submitters to internal (PhycoBank)
- PhycoBank decided to use a notes field in the early development.
This notes field became a "editorial" annotation fi... - 05:16 PM EDIT Revision f6ec5227 (cdmlib): updating poms for branch'release/5.44.0' with non-snapshot versions
- 05:14 PM EDIT Revision 219e2b45 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.44.0-SNAPSHOT
- 05:13 PM EDIT Revision dc718ed7 (cdm-webapp): updating poms for 5.45.0-SNAPSHOT development
- 05:13 PM EDIT Revision 1ef679aa (cdm-webapp): updating poms for 5.44.0 branch with snapshot versions
- 05:13 PM EDIT Revision ba095346 (taxeditor): Updated version in pom / project files to taxeditor version : 5.45.0-SNAPSHOT and cdmlib version : 5.45.0-SNAPSHOT
- 05:13 PM EDIT Revision 2e356513 (taxeditor): Updated version in pom / project files to taxeditor version : 5.44.0 and cdmlib version : 5.44.0
- 05:13 PM EDIT Revision c4a44ab9 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.45.0-SNAPSHOT
- 05:11 PM EDIT Revision 7fd2f60f (cdm-dataportal): updating poms for 5.45.0-SNAPSHOT development
- 05:11 PM EDIT Revision 4c0302b9 (cdm-vaadin): jenkins bumping cdmlib.version to 5.44.0-SNAPSHOT
- 05:11 PM EDIT Revision 5fa1eabb (cdm-vaadin): updating poms for 5.45.0-SNAPSHOT development
- 05:11 PM EDIT Revision 0553ed74 (cdm-vaadin): updating poms for 5.44.0 branch with snapshot versions
- 05:10 PM EDIT Revision ee80419c (cdm-server): updating poms for 5.45.0-SNAPSHOT development
- 05:10 PM EDIT Revision b31dfcf4 (cdm-vaadin): jenkins bumping cdmlib.version to 5.45.0-SNAPSHOT
- 05:06 PM EDIT Revision bf93fcf2 (cdmlib): updating poms for 5.45.0-SNAPSHOT development
- 04:37 PM EDIT Revision dda64c40 (cdm-dataportal): temporarily ignore Cichorium test to allow tests running
- 04:31 PM EDIT bug #10520 (Resolved): Support non-default language for new taxon pages (start with feature labels)
- others i18n issues are handled in #10508. So for now I do not open a follow up ticket.
Please do final review. (I ... - 02:58 PM EDIT bug #10520: Support non-default language for new taxon pages (start with feature labels)
- Now, at least features should be shown correctly if locale is es, ru or de. Other terms or i18n-texts are not yet han...
- 04:26 PM EDIT bug #10556 (New): Handle available annotation types via term tree, not vocabulary in vaadin
- revert (wrong ticket)
- 04:24 PM EDIT bug #10556 (Resolved): Handle available annotation types via term tree, not vocabulary in vaadin
- 03:16 PM EDIT bug #10556 (New): Handle available annotation types via term tree, not vocabulary in vaadin
- copied from #10538
This is done e.g. in CdmBeanItemContainer.buildVocabularyTermsItemContainer() - 04:22 PM EDIT Revision 8dfb9da5 (cdm-vaadin): cleanup
- 04:21 PM EDIT Revision 65a1748d (cdm-vaadin): ref #10552 set internal as default annotation type
- 04:21 PM EDIT Revision c9e70ebf (cdm-vaadin): ref #10492, ref #10538 and ref #10552 rename technial to internal in vaadin
- 04:15 PM EDIT Revision 58c5d8e9 (cdmlib): ref #10492, ref #10538 and ref #10552 rename technial to internal
- 03:17 PM EDIT task #10538: Remove empty annotation type from selection list in vaadin
- >open new ticket to handle anntations via term tree, not vocabulary as it is currently done.
=> #10556 - 09:20 AM EDIT task #10538: Remove empty annotation type from selection list in vaadin
- Comment: "Caveats" is withdrawn for two reasons: (1) it is not shown in the portal, (2) as a workaround "Caveats" can...
- 03:10 PM EDIT Revision a2ddf691 (cdmlib): ref #10520 first preliminary implementation to handle at least i18n feature labels for some languages (cont.)
- 02:49 PM EDIT Revision b4841de9 (taxeditor): ref #10520 use factory method for representation in TaxEditor
- 02:17 PM EDIT Revision d428c17f (cdmlib): ref #10555 revert TaxonNodeDto titleCache handling
- 01:59 PM EDIT Revision e1d19bd1 (cdmlib): ref #10520 first preliminary implementation to handle at least i18n feature labels for some languages
- 01:50 PM EDIT Revision 2f33e338 (cdmlib): ref #10555: insert taxon titlecache in titleCache field of taxonNodeDto
- 01:48 PM EDIT bug #10555 (Resolved): Sorting for doubtful taxa is not correct
- The taggedText is not available anymore for taxonnode, so the taxonTitleCache is used for comparison.
- 01:28 PM EDIT Revision 47f56704 (cdm-dataportal): ref #10536: check all issues are covered by tests - continue
- 01:25 PM EDIT bug #10519 (Closed): Collection code is removed from barcode/accession no. in type designation formatting
- 01:25 PM EDIT bug #10519: Collection code is removed from barcode/accession no. in type designation formatting
- This looks fine.
- 10:52 AM EDIT bug #10519: Collection code is removed from barcode/accession no. in type designation formatting
- Please do final review.
- 01:18 PM EDIT bug #10536 (Closed): Fix remaining issues on compact display of types
- 01:17 PM EDIT bug #10536: Fix remaining issues on compact display of types
- All mentioned issues are covered by tests (I added comments in test code)
- 11:08 AM EDIT bug #10536: Fix remaining issues on compact display of types
- I reviewed the doi/link. Please do final review for the other fixed issues and check if tests for all of them.
- 10:44 AM EDIT bug #10536: Fix remaining issues on compact display of types
- I think we can close this ticket? Could you review the portal implementation, please.
- 10:37 AM EDIT bug #10536: Fix remaining issues on compact display of types
- Andreas Müller wrote in #note-19:
> Open issues (exsiccatum, link for name types) moved to new tickets (#10549, #105... - 01:17 PM EDIT Revision 093be327 (cdm-dataportal): ref #10536: check all issues are covered by tests
- 12:57 PM EDIT bug #10551 (Closed): Summary of cdmLight issues
- 12:54 PM EDIT bug #10551: Summary of cdmLight issues
- I would remove the NameSpecimenTypeRelation, if we decide that it would be useful in future, we can add it again.
- 12:10 PM EDIT bug #10551 (Resolved): Summary of cdmLight issues
- Is this fully fixed?
- 08:26 AM EDIT bug #10551 (Closed): Summary of cdmLight issues
- * ~~comparison documentation and table structure~~
* ~~unique short citation/ long citation~~
* ~~delete NameSpeci... - 12:44 PM EDIT task #10492: Annotations should always have a type
- Katja Luther wrote in #note-15:
> Don't know why the uuid constant is called uuidDefined instead of uuidUnDefined, b... - 12:37 PM EDIT task #10492 (Closed): Annotations should always have a type
- Don't know why the uuid constant is called uuidDefined instead of uuidUnDefined, but it works as expected, so we can ...
- 11:03 AM EDIT task #10492 (Resolved): Annotations should always have a type
- Please do final review.
- 12:43 PM EDIT Revision 46e04079 (cdmlib): ref #10492 fix name of undefineduuid variable
- 12:39 PM EDIT bug #10530 (Closed): Ranks should be ordered hierarchically
- New ticket is #10554
- 12:22 PM EDIT bug #10530 (Feedback): Ranks should be ordered hierarchically
- OK, can you create the follow up ticket and add it to the next milestone?
- 09:46 AM EDIT bug #10530 (Resolved): Ranks should be ordered hierarchically
- This is fixed, but there is still a problem with the highlighted element in the dropdown. Could not find the reason. ...
- 12:38 PM EDIT bug #10554 (New): Fix selection in rank combo for Species
- See https://dev.e-taxonomy.eu/redmine/issues/10530#note-12
for description - 12:26 PM EDIT bug #10129: Allow to create MediaSpecimen when creating specimen for a type designation
- Andreas Müller wrote in #note-19:
> Andreas Müller wrote in #note-15:
> > "Published in" seem not be persisted when... - 11:26 AM EDIT bug #10129: Allow to create MediaSpecimen when creating specimen for a type designation
- Andreas Müller wrote in #note-15:
> "Published in" seem not be persisted when creating the new record. However, when... - 11:02 AM EDIT bug #10129: Allow to create MediaSpecimen when creating specimen for a type designation
- Andreas Müller wrote in #note-17:
> The text entered into "Method" is cloned into "Description" after the dialogue i... - 12:05 PM EDIT Revision dc849f65 (taxeditor): ref #10492 adapt taxeditor to changed undefined annotation type name
- 11:58 AM EDIT bug #10535 (Closed): Fix grex abbrev label for grex (infraspec.)
- Probably we should still run cache updater after release.
- 11:52 AM EDIT task #10553 (Closed): Rename technical annotation to internal annotation and untyped annotation to '-(undefined)' annotation
- 10:57 AM EDIT task #10553 (Resolved): Rename technical annotation to internal annotation and untyped annotation to '-(undefined)' annotation
- 10:20 AM EDIT task #10553 (Closed): Rename technical annotation to internal annotation and untyped annotation to '-(undefined)' annotation
- ... as most such annotations are not really technical rather than internal (not shown to the public).
We may think... - 11:43 AM EDIT Revision d789769b (cdmlib): ref #10553, ref #10492 rename annotationType.undefined in variable and method names and fix setAnnotationType to avoid null
- 11:31 AM EDIT Revision aaaa9538 (taxeditor): ref #10129: fix saving publishedIn
- 11:21 AM EDIT Revision 843809d5 (cdmlib): ref #10545 try to fix NPE when moving taxon node
- 11:15 AM EDIT feature request #10537 (Closed): Filter dummy WFO-IDs in dataportal
- For a identifier starting with "dummy" it works as expected.
- 10:55 AM EDIT feature request #10537: Filter dummy WFO-IDs in dataportal
- Please do final review.
- 11:04 AM EDIT bug #10545 (In Progress): NPE when trying to move taxon in tree
- 11:01 AM EDIT Revision a57d7664 (cdmlib): ref #10492 at notNull constraint to annotation.annotationType
- 10:53 AM EDIT bug #10540: A Cichorieae source proxy is not loaded correctly by dto loading
- Please do final review.
- 10:49 AM EDIT Revision 02857023 (taxeditor): update taxeditor test H2
- 10:48 AM EDIT Revision aaedf794 (cdm-vaadin): update vaadin test H2
- 10:47 AM EDIT Revision 5cf8bd06 (cdm-vaadin): cleanup
- 10:45 AM EDIT Revision 8c2eaf33 (cdmlib): ref #10492, ref #10553, #10535 update grex rank and 'untyped' + technical annotation type labels + abbrevs and add 'untyped' if it does not yet exist
- 10:42 AM EDIT task #10526 (Closed): Display plant description after ecology and before date in field units
- Code looks fine, test works and the portal display looks as expected as well, so we can close this ticket.
- 10:23 AM EDIT Revision f23f0ef8 (cdm-dataportal): adapt test to changed order of links
- 10:18 AM EDIT Revision eae50f66 (cdm-dataportal): adapt test to changed order of links
- 10:12 AM EDIT Revision f93e6eca (cdm-dataportal): adapt test to changed order of links
- 09:57 AM EDIT Revision df308abd (cdm-dataportal): adapt test to changed order of links
- 09:41 AM EDIT Revision 30023ad0 (cdm-dataportal): adapt test to changed order of links
- 09:39 AM EDIT Revision 0788b6ec (cdm-dataportal): add locale as parameter
- 09:14 AM EDIT Revision 5b654105 (cdm-dataportal): change doi and url order
- 08:49 AM EDIT Revision 570678c2 (cdm-dataportal): add test for url and doi, add imports
- 08:45 AM EDIT Revision 5c8eb232 (cdm-dataportal): add test for url and doi
- 08:17 AM EDIT Revision ab508209 (cdm-dataportal): ref #10418: check whether representations exist
- 08:10 AM EDIT Revision b4c187c5 (cdm-dataportal): show link and doi for references - continue
- 07:56 AM EDIT Revision 1a5ce459 (cdm-dataportal): show link and doi for references
07/03/2024
- 10:28 PM EDIT task #10538 (Resolved): Remove empty annotation type from selection list in vaadin
- The empty annotation type issue should be solved. "Caveats" issue should be handled as workaround (move Caveats to de...
- 10:26 PM EDIT Revision a53a84cc (cdm-vaadin): handle potential NPE
- 10:25 PM EDIT Revision 825a5d33 (cdm-vaadin): ref #10538 remove empty annotation type from selection list in vaadin
- 10:24 PM EDIT Revision f6cee27b (cdm-vaadin): cleanup
- 09:04 PM EDIT feature request #10533 (Closed): Add desig. inval. to name parser
- Now it works also on Cichorieae test DB.
- 01:32 PM EDIT feature request #10533 (Resolved): Add desig. inval. to name parser
- It seems to work on a non-cichorieae DB, but on e.g. test-cichorieae it does not. This is probably because the term a...
- 08:31 PM EDIT bug #10543: ChildNodesOf webservice does not show taxa without secundum, rank or name
- I tested on test with an added taxon https://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/cd...
- 07:27 PM EDIT bug #10543: ChildNodesOf webservice does not show taxa without secundum, rank or name
- Upps, I didn't pay attention to the above comment that sec is not needed. Still need to adapt accordingly.
- 07:24 PM EDIT bug #10543 (Resolved): ChildNodesOf webservice does not show taxa without secundum, rank or name
- First version available. Still needs testing
- 08:22 PM EDIT Revision 8c92203a (cdmlib): ref #10533 handle desig. inval. and nom. inval. hardcoded to avoid issues
- 08:16 PM EDIT Revision 4b3fb0ff (cdmlib): cleanup
- 08:15 PM EDIT Revision 65fc9162 (cdmlib): ref #10533 remove normalization for desig. inval. as it is stored in abbrev label which is used for computation
- 07:22 PM EDIT Revision fdd0e54b (cdmlib): ref #10543 try to fix loading of taxon nodes without sec or rank
- 07:07 PM EDIT bug #10129: Allow to create MediaSpecimen when creating specimen for a type designation
- The text entered into "Method" is cloned into "Description" after the dialogue is reopened.
We may open a new tic... - 06:58 PM EDIT bug #10129: Allow to create MediaSpecimen when creating specimen for a type designation
- Maybe the possibility to add field data (either via a second assistant page or an "open" button to open another dialo...
- 06:58 PM EDIT bug #10129 (Feedback): Allow to create MediaSpecimen when creating specimen for a type designation
- "Published in" seem not be persisted when creating the new record. However, when reopening it and adding again it is ...
- 11:30 AM EDIT bug #10129 (Resolved): Allow to create MediaSpecimen when creating specimen for a type designation
- This should be solved, please review.
- 11:25 AM EDIT bug #10129 (In Progress): Allow to create MediaSpecimen when creating specimen for a type designation
- 07:03 PM EDIT feature request #3756: Missing data and layout improvements for MediaSpecimen in data portal
- We should check what is still open here.
- 06:57 PM EDIT bug #10425 (Closed): MediaSpecimen as Typespecimen should be opened in corresponding details dialog
- Sorry, the above comments belong to the more general issue #10129. This ticket can be closed.
- 06:54 PM EDIT bug #10425: MediaSpecimen as Typespecimen should be opened in corresponding details dialog
- Maybe the possibility to add field data (either via a second assistant page or an "open" button to open another dialo...
- 06:51 PM EDIT bug #10425 (Feedback): MediaSpecimen as Typespecimen should be opened in corresponding details dialog
- "Published in" seem not be persisted when creating the new record. However, when reopening it and adding again it is ...
- 11:31 AM EDIT bug #10425 (Resolved): MediaSpecimen as Typespecimen should be opened in corresponding details dialog
- This is fixed with #10129, please review
- 06:26 PM EDIT bug #10536 (Resolved): Fix remaining issues on compact display of types
- Open issues (exsiccatum, link for name types) moved to new tickets (#10549, #10550).
DOI/URI linking still needs t... - 05:53 PM EDIT bug #10536: Fix remaining issues on compact display of types
- DOI and URI link test data: https://int.e-taxonomy.eu/dataportal/integration/cichorieae/cdm_dataportal/taxon/296b4758...
- 06:22 PM EDIT bug #10550 (New): Add link for name types
- copied from #10536
With 5.43 there came a regression that name types (types representing a name) are not linked a... - 06:08 PM EDIT bug #10549 (Discussed): Move exsiccatum to field unit
- In #10536 it was suggested by the users to add the exsiccatum string to the field unit data within the type block.
... - 05:46 PM EDIT task #10526: Display plant description after ecology and before date in field units
- Portal test available now for https://int.e-taxonomy.eu/dataportal/integration/cichorieae/cdm_dataportal/taxon/296b47...
- 02:08 PM EDIT task #10526: Display plant description after ecology and before date in field units
- Tested on test server and it works. Still need integration test. Tested with https://test.e-taxonomy.eu/dataportal/pr...
- 05:44 PM EDIT Revision 00f55d51 (cdm-dataportal): ref #10526 add portal test for ecology and plant description and collection date
- 05:10 PM EDIT Revision becd6783 (cdm-dataportal): show link and doi for references in footnotes
- 04:32 PM EDIT feature request #10488 (Resolved): Distinguish equal short citations by adding a, b, c,... to the year in cdmlight (and add long citation)
- This should be fixed. Please review and then pass to WGB for final review.
Implementation as new columns UniqueSho... - 04:30 PM EDIT Revision eedb5d6b (cdmlib): ref #10488 fix unique citations in cdmlight also for long citation
- 03:40 PM EDIT Revision b4705a27 (taxeditor): ref #10530: don't change selection when only open drop down
- 02:05 PM EDIT Revision ce68faf6 (cdmlib): ref #10536 allow doi and uri for links in TaggedText (cont. II)
- 01:49 PM EDIT bug #10530: Ranks should be ordered hierarchically
- Andreas Müller wrote in #note-10:
> Katja Luther wrote in #note-9:
> > Andreas Müller wrote in #note-7:
> > > Now,... - 01:14 PM EDIT bug #10530 (Feedback): Ranks should be ordered hierarchically
- Katja Luther wrote in #note-9:
> Andreas Müller wrote in #note-7:
> > Now, when I click on the dropdown button, the... - 01:42 PM EDIT Revision 10bc26f3 (cdmlib): ref #10536 allow doi and uri for links in TaggedText (cont.)
- 01:36 PM EDIT Revision fc3a8923 (cdmlib): cleanup
- 01:35 PM EDIT Revision c1e96bcf (cdmlib): ref #10536 allow doi and uri for links in TaggedText
- 01:10 PM EDIT bug #10544 (Closed): Newly created facts always go to the default description
- Works as expected.
- 01:07 PM EDIT Revision d83d6858 (cdm-dataportal): ref #10418: don't call ws for already complete media - continue
- 12:37 PM EDIT Revision 81177dd6 (cdm-dataportal): ref #10418: do not call media ws for already complete media
- 09:35 AM EDIT Revision 10d6ebe8 (taxeditor): ref #10129: do not create facade for media specimen
07/02/2024
- 05:09 PM EDIT Revision ddc51d44 (cdmlib): ref #10525: filtering authors parameters
- 03:17 PM EDIT bug #10129: Allow to create MediaSpecimen when creating specimen for a type designation
- now there is a second button in specimen selection dialog to create a media specimen instead of a Derived Unit. And w...
- 02:58 PM EDIT Revision 738742e3 (taxeditor): ref #10129: button to create media and implement wizard to edit
- 12:23 PM EDIT feature request #10533: Add desig. inval. to name parser
- With "Achatocarpus brevipedicellatus H.Walter in Engler, Das Pflanzenreich Heft IV. 83, 39: 138. 1909, desig. inval."...
- 11:44 AM EDIT bug #10544 (Resolved): Newly created facts always go to the default description
- This should be fixed, please review.
- 11:43 AM EDIT Revision 12be7157 (taxeditor): ref #10544: fix facts creation for featurenote container
- 10:44 AM EDIT feature request #5232 (Rejected): use TaxonBase.getTaggedTitle to get the sec reference in theme_cdm_taxonRelationships()
- All synonym and taxon relationship issues are handled in the new portal dto, so we can set this ticket to rejected.
- 10:34 AM EDIT bug #10539 (Closed): Fix incorrect bidirectionality between derivation event and derivative
- Code looks fine and all tests are running.
- 10:27 AM EDIT bug #10542 (Closed): DOI for sec references not shown as URI
- This is fixed.
- 10:22 AM EDIT bug #10530 (Resolved): Ranks should be ordered hierarchically
- Andreas Müller wrote in #note-7:
> Now, when I click on the dropdown button, the dropdown does not open but instead ... - 10:21 AM EDIT Revision 24c5a4fc (taxeditor): ref #10530: already selected should change clicking on dropdown
- 09:56 AM EDIT bug #10546 (Closed): Character Matrix doesn't open with CCE
- I think we can close the ticket as we found the cause of the problem and the matrix opens again with the fix.
- 08:52 AM EDIT feature request #10488: Distinguish equal short citations by adding a, b, c,... to the year in cdmlight (and add long citation)
- >Verstehe ich es richtig, dass beim ersten Auftreten eines Kurzzitat-Strings dieser normal ausgegeben werden soll, be...
- 08:41 AM EDIT Revision b61968f4 (cdmlib): ref #10488 adapt test to new a,b,c handling
07/01/2024
- 09:01 PM EDIT feature request #10488: Distinguish equal short citations by adding a, b, c,... to the year in cdmlight (and add long citation)
- WGB: Das haben wir nicht richtig ausdiskutiert – ich denke, das Attribut ist überflüssig. Der Index (a, b etc.) sollt...
- 04:31 PM EDIT Revision 71091092 (cdmlib): revert unique long citation creation
- 04:21 PM EDIT Revision e8cc143d (cdmlib): ref #10546: fix class not found exception while loading result
- 12:54 PM EDIT Revision aea1eef1 (cdmlib): remove NameSpecimenType relations table
- 12:34 PM EDIT bug #10548 (New): [cdmLight] Adapt meta data table to WFO needs
- mail WB:
Und noch eine Frage (nicht so eilig): Wir haben eine recht umfangreiche Metadata Tabelle in der Doku, die... - 12:14 PM EDIT Revision dc6ca69f (cdmlib): smaller changes in cdmLight
- 12:10 PM EDIT Revision deca50f5 (taxeditor): avoid NPE
06/30/2024
- 10:41 AM EDIT Revision 7904b2db (cdm-dataportal): cleanup
- 10:39 AM EDIT Revision 469eb443 (cdmlib-apps): minor
- 10:38 AM EDIT Revision e33a298d (cdmlib-apps): update Koperski import activator
06/28/2024
- 09:44 PM EDIT task #10532: Remaining issues for Cichorieae WFO import
- New Statistics:
Accepted with wfo-id: 11.288 (35 with "xxx" or "lineage or "Probable"), aggregates, etc. not inclu... - 09:44 AM EDIT task #10321: WFO name matching for Cichorioideae
- New Statistics:
Accepted with wfo-id: 11.288 (35 with "xxx" or "lineage or "Probable"), aggregates, etc. not inclu...
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