Activity

From 02/24/2023 to 03/25/2023

03/21/2023

11:35 PM EDIT bug #10274: Opening a gathering event does not work in ReferencingObjectsView: I tested with person "GatheringEvent Tester" in rem_conf_am and it worked. Can you also review? Andreas Müller
11:25 PM EDIT bug #9766 (Feedback): CDM vocabularies should not be editable: Drag&drop from and to CDM vocabularies is still possible. Move to ... I could not check as there was an NPE in the pa... Andreas Müller
11:22 PM EDIT Revision 8b5235cf (taxeditor): fix NPE in StoreUtil.compareBySearchString: Andreas Müller
11:22 PM EDIT Revision 1f4038c2 (taxeditor): cleanup: Andreas Müller
11:14 PM EDIT bug #10278 (Feedback): Fix language selection for features in factual data view: Seems to work after restart of the editor. Please decide if it is simple to make it work also without restarting. If ... Andreas Müller
12:45 PM EDIT bug #10278 (Resolved): Fix language selection for features in factual data view: I guess this is fixed and can be reviewed. Andreas Müller
12:44 PM EDIT bug #10278 (Closed): Fix language selection for features in factual data view: Andreas Müller
10:49 PM EDIT feature request #10221 (Feedback): Add form to edit the json file with cdmserver info: Generally it works. Some minor issues:
* ~~the table should include the "check cdmlib version" value~~
* ~~the defau... Andreas Müller
12:01 PM EDIT feature request #10221: Add form to edit the json file with cdmserver info: please review, the json file is now well formatted as well. Katja Luther
04:19 PM EDIT bug #10277: HibernateSystemException and BridgeException not in taxeditor dependencies: Can you send me the stacktrace and can you check locally in your IDE if the class is available. From the stacktrace c... Andreas Müller
03:54 PM EDIT bug #10277 (Feedback): HibernateSystemException and BridgeException not in taxeditor dependencies: Unfortunatly I got this exception again with nightly and the flora mexico instance on test. Katja Luther
03:49 PM EDIT bug #10280 (New): Translation of bibliography does not work for feature list on taxon page: After translation of bibliography only the label of the block is correctly shown, the label of the item list is still... Katja Luther
03:25 PM EDIT task #10205 (Resolved): Update GBIF import to modern json library.: I checked the actual files with the files before reverting the json lib removing and checked the import, which still ... Katja Luther
02:15 PM EDIT bug #10234 (Resolved): MetaData of images coming from the new image server are not shown: default values are adapted, I will copy the production db to test and then you can test with Abutilon theophrasti and... Katja Luther
01:14 PM EDIT bug #10234: MetaData of images coming from the new image server are not shown: I need to adapt the default value for the preference, then we can close this ticket. I will do that today. Katja Luther
02:11 PM EDIT Revision b81c22fd (cdmlib): ref 10234: adapt preference default value to new meta data key names: Katja Luther
01:21 PM EDIT bug #10279 (New): It should be possible to add nomenclatural reference in wizard for new name: mail ERS:
Hallo Andreas,
ich habe eine technische Frage zum TaxEditor:
Wenn ich ein Homonym hinzufüge, das n... Katja Luther
01:19 PM EDIT task #10249: Mapping for metadata labels of images in portal: There is an enumeration for the default labels, but we should think about a solution which holds the label of the met... Katja Luther
01:11 PM EDIT bug #8953: Focus not correctly evaluated for details view when switching between names: ERS:
was ich meine ist dieses (siehe screenshot)
die hellblaue Tönug unter Nardurus orientalis verleitet mich zu de... Andreas Müller
12:33 PM EDIT Revision 8f346bc4 (taxeditor): ref #10221: save the json file in human readable form: Katja Luther
11:27 AM EDIT Revision 5d4b8cfa (taxeditor): fix term representation: Katja Luther

03/20/2023

09:52 PM EDIT bug #10277 (Resolved): HibernateSystemException and BridgeException not in taxeditor dependencies: I tried to fix this by adding the spring-orm dependency. Please review.
In the long run we should try to find a wa... Andreas Müller
09:42 PM EDIT bug #10277 (Closed): HibernateSystemException and BridgeException not in taxeditor dependencies: ~~~
last remote service : http://132.248.13.83:8080/cdmserver/cdm_flora_mexico/remoting/taxonnode.service
last remo... Andreas Müller
09:49 PM EDIT Revision caf9b097 (taxeditor): ref #10277 try to fix HibernateSystemException handling: Andreas Müller
06:04 PM EDIT task #9975: Create new UML diagramms for the CDM: Remove all not necessary files from https://cybertaxonomy.org/cdm-uml/v532/ (e.g. all java files) Andreas Müller
06:02 PM EDIT task #9975 (Feedback): Create new UML diagramms for the CDM: Andreas Müller
06:01 PM EDIT task #9975: Create new UML diagramms for the CDM: * clicking 2x on the diagram symbol ![](clipboard-202303201701-16jcd.png) should not remove the diagram
* the clic... Andreas Müller
04:57 PM EDIT task #9975: Create new UML diagramms for the CDM: Some issues:
* root node should not expandable/collapsable
* the following symbol does not seem to have an (importa... Andreas Müller
03:52 PM EDIT task #10205: Update GBIF import to modern json library.: Is this for final review? Andreas Müller
03:49 PM EDIT feature request #10221: Add form to edit the json file with cdmserver info: Is this for review already? Andreas Müller
03:00 PM EDIT feature request #10245: #9626 Implement publisher information for bibliographic reference formatting: Please also add a test with only the publisher given (without place published). This case currently seems not to be i... Andreas Müller
02:57 PM EDIT feature request #10245 (Feedback): #9626 Implement publisher information for bibliographic reference formatting: According to the data model also journals and print series have a publisher. Can you please discuss with Norbert if t... Andreas Müller
02:42 PM EDIT feature request #10245: #9626 Implement publisher information for bibliographic reference formatting: Implementation is ok for book and booksection. I added tests for generic, cd and thesis and added implementaton for r... Andreas Müller
02:53 PM EDIT Revision 6baebe22 (cdmlib): ref #10245 fix publisher handling for report and proceedings: Andreas Müller
02:39 PM EDIT Revision 2834e6a1 (cdmlib): ref #10245 add publisher handling and/or testing for generic, thesis, report, map, database cdDvd: Andreas Müller

03/17/2023

07:47 PM EDIT bug #10276 (New): Cleanup person data with undefined information: Since using the new person data model with defined nomenclaturalTitle and collectorTitle there is some data that has ... Andreas Müller
03:45 PM EDIT bug #10274 (Resolved): Opening a gathering event does not work in ReferencingObjectsView: Applied in changeset commit:cdmlib|c0e2367321a9e230f5454ea1e0e736a0da75374c. Andreas Müller
01:08 PM EDIT bug #10274: Opening a gathering event does not work in ReferencingObjectsView: The related code seems to be here:
~~~
public List<FieldUnit> findFieldUnitsForGatheringEvent(UUID gatheringE... Andreas Müller
01:04 PM EDIT bug #10274 (Closed): Opening a gathering event does not work in ReferencingObjectsView: still need to check if this is a cdmlib issue.
Happened while trying to open the GE related to team ("Thomas D, Pers... Andreas Müller
03:45 PM EDIT Revision c0e23673 (cdmlib): fix #10274 hopefully fix class type issue in OccurrenceDaoHibernateImpl.findFieldUnitsForGatheringEvent(): Andreas Müller
02:32 PM EDIT bug #10275 (New): Improve term tree in preferences: The term tree of preference pages is very slow for large vocabularies, this needs to be fixed.
There are some other... Katja Luther
01:16 PM EDIT Revision 202889e9 (cdmlib): ref #10037: use host.docker.internal as host and send mail again: Katja Luther
11:46 AM EDIT bug #10269: Selecting existing name for typification: WHK: no changes in the user-rights, the references of stored names (as names only) should be completed on the PhycoBa... Wolf-Henning Kusber
11:27 AM EDIT Revision 3bbc8d2a (cdmlib): ref #10245: add publisher information for book section: Belen Escobari

03/16/2023

02:13 PM EDIT Revision 602986a7 (cdmlib): ref #10037: if mail sending fails use host.docker.internal as host: Katja Luther

03/15/2023

11:57 PM EDIT feature request #10273: DwC-A export for WFO: ERS:
„Cc“ was rarely and inconsistently used and is going to be replaced with more accurate data.
AM:
So wha... Andreas Müller
04:46 PM EDIT feature request #10273: DwC-A export for WFO: AM:
Das Hauptproblem beim Mapping der Areale wird sein, die Areale zu mappen, die auf mehrere TDWG Areale mappen. ... Andreas Müller
11:00 AM EDIT feature request #10273 (New): DwC-A export for WFO: DwC-A export for WFO (World Flora Online). This includes the specific WFO DwCA format. It also inlcudes an area mappi... Andreas Müller
12:46 PM EDIT Revision 071e99c8 (taxeditor): adapt MANIFEST.MF and pom.xml to version before reverting json-lib: Katja Luther
11:19 AM EDIT bug #2121: Series part is not reflected in cache strategy: Please mention examples in tests if you think it is already implemented. Andreas Müller
11:18 AM EDIT bug #2121: Series part is not reflected in cache strategy: You could check here, if series is still not used in book formatting or if this ticket is outdated. Andreas Müller
11:04 AM EDIT Revision 42bf2169 (taxeditor): add commons-codev again: Katja Luther
08:34 AM EDIT Revision d75c06de (taxeditor): remove json-lib from build.properties: Katja Luther

03/14/2023

04:38 PM EDIT task #7811 (Feedback): Import higher classifications: Wolf-Henning Kusber wrote in #note-26:
> Reopened for WoRMS and other classifications.
So this means that Frey W.... Andreas Müller
04:33 PM EDIT bug #10272 (New): Import WoRMS (and other) higher classifications for Phycobank: Copied from #7811 (and #7420):
The following classifications needs to be imported using the import created for #74... Andreas Müller
02:16 PM EDIT Revision 689959db (taxeditor): add commons-collections4 in build.properties: Katja Luther
02:06 PM EDIT Revision 7f85ab75 (taxeditor): add commons-collections4 again: Katja Luther
01:26 PM EDIT feature request #10245 (Resolved): #9626 Implement publisher information for bibliographic reference formatting: changes were gefixt/commited/geupdated. Is there something else to do yet for this ticket? Belen Escobari
10:32 AM EDIT feature request #10245: #9626 Implement publisher information for bibliographic reference formatting: the changes have been now commited and pushed Belen Escobari
01:15 PM EDIT Revision a6d777ac (taxeditor): Revert "Revert "ref #10205: remove libraries from pom"": This reverts commit 9423c69a72a97c45224033e00523d62bf502577f. Katja Luther
01:13 PM EDIT Revision 1de56bbe (taxeditor): Revert "Revert "ref #10205: remove not used libraries in build.properties"": This reverts commit 319c4f0cc697640ac789b2e7e3dff53f8232cf66. Katja Luther
12:51 PM EDIT Revision ba3917a9 (taxeditor): change nebula repository to archived one also in pom.xml: Katja Luther
12:50 PM EDIT Revision 2c1355f8 (taxeditor): change nebula repository to archived one: Katja Luther
10:18 AM EDIT Revision 45a64e2d (cdmlib): ref #10245: added publisher information in reference: Belen Escobari
10:17 AM EDIT Revision 03feeb43 (cdmlib): ref #10245 (#9626) add publisher and place published to ReferenceDefaultCacheStrategy in Book Sections: Belen Escobari

03/13/2023

06:34 PM EDIT discussion #10263: How to handle "additional secundum sources" and other "citations": another usecase by WGB:
Bibliographische Zitate mit Zusatzinformation als Ersatz für Konzeptrelationen. See Salvador... Andreas Müller
05:27 PM EDIT feature request #10271 (New): Implement CoL-DP export: Important for exports to Col and GCB and maybe also WFO. Alternatively implement it as DwC-A backbone export (which ... Andreas Müller
05:17 PM EDIT bug #10167 (Resolved): Selecting an existing name and adding a new journal does not work for phycobank registration: Maybe we still need to check if the journal editing rights are taken away from the submitter again appropriately. Andreas Müller

03/12/2023

01:40 PM EDIT bug #10269 (Feedback): Selecting existing name for typification: List of names with missing nom. ref. sent to WHK. Data needs to be cleaned.
Until then we need to decide how to ha... Andreas Müller
01:29 PM EDIT bug #10269: Selecting existing name for typification: Names without nom. reference can be found via:
~~~ sql
SELECT tn.id, tn.titleCache, tn.nameCache, dtb.titleCache ... Andreas Müller
01:33 PM EDIT task #10268: Selecting an existing name as basionym: List with names without nom. ref. sent to WHK. Data needs to be cleaned. Andreas Müller
01:30 PM EDIT task #10268: Selecting an existing name as basionym: Names without nom. reference can be found via:
~~~ sql
SELECT tn.id, tn.titleCache, tn.nameCache, dtb.titleCache ... Andreas Müller

03/11/2023

07:55 PM EDIT task #10268: Selecting an existing name as basionym: *Navicula brekkaensoides* has no reference in the test version. So the problem is major but of minor relevance becaus... Wolf-Henning Kusber
07:35 PM EDIT bug #10167 (Closed): Selecting an existing name and adding a new journal does not work for phycobank registration: Andreas Müller

03/10/2023

06:24 PM EDIT bug #10167: Selecting an existing name and adding a new journal does not work for phycobank registration: The bugs mentioned in this Ticket are fixed. This ticket can be closed. (The linked tickets are extra tasks). This ti... Wolf-Henning Kusber
11:39 AM EDIT bug #10167: Selecting an existing name and adding a new journal does not work for phycobank registration: Main descripton related to #10269 Wolf-Henning Kusber
03:29 PM EDIT bug #10269: Selecting existing name for typification: Testsystem;: User selected genus name "Lepocinclis" and selected the availabele reference "Perty 1849" and got the fo... Wolf-Henning Kusber
03:27 PM EDIT bug #10269: Selecting existing name for typification: The issue is more a data issue, NOT related to #10167
I was not aware that the given example has a reference in the ... Wolf-Henning Kusber
11:38 AM EDIT bug #10269 (Resolved): Selecting existing name for typification: Rights: User
Action: User wants to provide a new type for an existing scientific name
Here: in Testsystem:
... Wolf-Henning Kusber
03:11 PM EDIT Revision 675b465d (taxeditor): handle null values form referencing objects as exceptions: Andreas Müller
03:11 PM EDIT Revision 809db6c0 (taxeditor): cleanup: Andreas Müller
03:08 PM EDIT Revision 196e4fdb (cdmlib): javadoc: Andreas Müller
03:08 PM EDIT Revision 4fa9eb56 (cdmlib): remove getVocabularyEnum(Class): Andreas Müller
12:35 PM EDIT discussion #10263: How to handle "additional secundum sources" and other "citations": This has minor priority now as we found that portal administration allows other features to be handled as more or les... Andreas Müller
12:33 PM EDIT bug #10270 (New): Name used in source shown 2x when using source in content: for a feature in dataportal-admin-taxon-taxon profile-taxon profile feature block settings
It shows something like... Andreas Müller
11:21 AM EDIT task #10268 (Feedback): Selecting an existing name as basionym: What do you mean with "rights: user"? Do you mean submitter? If yes, does this not happen with rights: curator? Andreas Müller
11:17 AM EDIT task #10268 (Feedback): Selecting an existing name as basionym: Rights: User
Action: User provides a new combination and wants to select a basionym or replaced synonym already in t... Wolf-Henning Kusber
10:12 AM EDIT bug #10262 (Closed): Switch longitude and latitude in GeoLocationField: Andreas Müller
08:15 AM EDIT bug #10262: Switch longitude and latitude in GeoLocationField: Works as expected (Testsystem, Vaadin, functionality checked with help of the map view in Vaadin). Ticket can be closed. Wolf-Henning Kusber
08:06 AM EDIT bug #9766: CDM vocabularies should not be editable: Yes, please review. Katja Luther

03/09/2023

09:27 PM EDIT bug #9766 (Resolved): CDM vocabularies should not be editable: I guess this is for review? Andreas Müller
05:14 PM EDIT task #8514: remove all PhycoBank redmine instances: Could not solve the problem, but some informations what I found out:
redmine.phycobank.org is a cname for edit-commu... Katja Luther
01:20 PM EDIT bug #10267 (New): After deleting a record in bulk editor re-search is not not done correctly: The bulkeditor shows many empty lines after deleting a record and saving it:
![](clipboard-202303091319-kleeg.png)... Andreas Müller
01:01 PM EDIT bug #10266 (New): Linking navigator with taxon slows down TaxEditor: If linking is switched on in the navigator:
![](clipboard-202303091258-hku9v.png)
the TaxEditor slows down trem... Andreas Müller
12:33 PM EDIT Revision 319c4f0c (taxeditor): Revert "ref #10205: remove not used libraries in build.properties": This reverts commit 00280b838bbe2e4aaac440421a9ad6a7fa739355. Katja Luther
12:17 PM EDIT Revision 9423c69a (taxeditor): Revert "ref #10205: remove libraries from pom": This reverts commit d88b3f76273ae41dd4fcaa2e4e785bab0414fe75. Katja Luther
12:07 PM EDIT bug #10265 (New): Change color for person fields "Abbrev title" and "Collector title" if not set: currently the grey is difficult to distinguish from ordinary black (which means that data is available).
The grey ... Andreas Müller
11:56 AM EDIT bug #10264 (New): Update details view and referencing objects view after deduplication: Currently it still shows the data from before deduplication even if you explicitly click on the remaining record. Thi... Andreas Müller
11:30 AM EDIT Revision 7897e6d1 (cdmlib): ref #10205: test for textValue before calling textValue() on jsonNode: Katja Luther
11:17 AM EDIT Revision d88b3f76 (taxeditor): ref #10205: remove libraries from pom: Katja Luther
11:02 AM EDIT feature request #10221 (Resolved): Add form to edit the json file with cdmserver info: I put this to resolved already so we do not forget it for the release. Andreas Müller
11:01 AM EDIT task #10205 (Feedback): Update GBIF import to modern json library.: Andreas Müller
10:59 AM EDIT task #10205: Update GBIF import to modern json library.: Katja Luther wrote in #note-12:
> Thanks for recognizing ... I removed the libraries also from the properties file n... Andreas Müller
10:54 AM EDIT task #10205: Update GBIF import to modern json library.: Katja Luther wrote in #note-13:
> Andreas Müller wrote in #note-10:
> > Constructions like "record.get(COUNTRY_CODE... Andreas Müller
10:48 AM EDIT task #10205: Update GBIF import to modern json library.: Andreas Müller wrote in #note-10:
> Constructions like "record.get(COUNTRY_CODE).textValue();" seem to be dangerous ... Katja Luther
10:42 AM EDIT task #10205 (Resolved): Update GBIF import to modern json library.: Thanks for recognizing ... I removed the libraries also from the properties file now. Katja Luther
10:40 AM EDIT Revision 00280b83 (taxeditor): ref #10205: remove not used libraries in build.properties: Katja Luther
10:15 AM EDIT discussion #10263: How to handle "additional secundum sources" and other "citations": WGB:
Citation hat ja eigentich einen ganz eigenen Typ – im Feature Editor ist das aber einfach als Text definiert.... Andreas Müller
09:49 AM EDIT discussion #10263 (New): How to handle "additional secundum sources" and other "citations": There are different sources/references/citations that need to be attached to a taxon.
* "the" secundum reference i... Andreas Müller
10:02 AM EDIT Revision 7a64a6b4 (taxeditor): ref #10221: change symbol: Katja Luther

03/08/2023

03:56 PM EDIT feature request #6697 (Worksforme): reconstruct getReferencingObjects to return DTOs: This has been implemented some time ago already. Partly by using a DTO and by loading the labels asynchronously serve... Andreas Müller
03:52 PM EDIT feature request #6460 (Closed): Refactor referencing objects in a way that supplemental data know what object they belong to: At least for description sources this works now and shows deb information correctly starting in 5.36 Andreas Müller
02:33 PM EDIT Revision 1fbe5e2e (cdmlib): ref #6460 show feature for textData in refObjView and better handling for empty term labels: Andreas Müller
01:50 PM EDIT task #10205: Update GBIF import to modern json library.: In #10204 you did not only change Manifest.MF but also others (e.g. eu.etaxonomy.taxeditor.cdmlib/build.properties ).... Andreas Müller
01:46 PM EDIT task #10205 (Feedback): Update GBIF import to modern json library.: Constructions like "record.get(COUNTRY_CODE).textValue();" seem to be dangerous for throwing NPEs. Is it guaranteed t... Andreas Müller

03/07/2023

10:32 PM EDIT feature request #10245 (Feedback): #9626 Implement publisher information for bibliographic reference formatting: I can't see any new commits for ReferenceDefaultCacheStrategy or it's test class and also not attached to this ticket... Andreas Müller

03/06/2023

03:37 PM EDIT feature request #10245 (Resolved): #9626 Implement publisher information for bibliographic reference formatting: For review, please put status to "Resolved" (not Closed) and %Done to 70% Andreas Müller
12:45 PM EDIT feature request #10245 (Closed): #9626 Implement publisher information for bibliographic reference formatting: Belen Escobari

03/05/2023

10:35 AM EDIT feature request #10261 (Closed): Avoid type designation type selection dialogue: Andreas Müller
09:44 AM EDIT feature request #10261: Avoid type designation type selection dialogue: Reviewed. Thanks, works as expected. Ticket can be closed. Wolf-Henning Kusber
01:57 AM EDIT bug #10167 (Resolved): Selecting an existing name and adding a new journal does not work for phycobank registration: Should generally work now. Some fine tuning still necessary (e.g. status message and which fields are read-only etc.)... Andreas Müller
01:35 AM EDIT bug #10248 (Closed): Vocabulary is not shown in TermSearch: Works as expected Andreas Müller
01:35 AM EDIT bug #10244 (Closed): Modifying text of quantitative data not saved: Works as expected Andreas Müller
12:46 AM EDIT Revision 4241b0ae (cdm-vaadin): ref #10167 allow selecting existing name for registration without update rights: Andreas Müller
12:45 AM EDIT Revision 39da079f (cdm-vaadin): cleanup: Andreas Müller

03/04/2023

09:38 PM EDIT Revision c0f64e45 (cdm-vaadin): ref #10262 fix order for long and lat (cont.): Andreas Müller
09:11 PM EDIT Revision 197bd187 (cdm-vaadin): add generics to presenter and view and cleanup: Andreas Müller
06:49 PM EDIT Revision 8c995365 (cdm-vaadin): cleanup: Andreas Müller
06:00 PM EDIT bug #10167: Selecting an existing name and adding a new journal does not work for phycobank registration: Andreas Müller wrote in #note-3:
> WHK:
>
> Wenn Journal/Book neu anzulegen: Fehlermeldung. Referenz mit neuem Jo... Andreas Müller
12:54 PM EDIT bug #10167: Selecting an existing name and adding a new journal does not work for phycobank registration: New Journal: problem is, that variable `crud` is not set for the in-reference presenter. This is missing in `Referenc... Andreas Müller
05:58 PM EDIT feature request #10261: Avoid type designation type selection dialogue: please review Andreas Müller
05:57 PM EDIT feature request #10261 (Resolved): Avoid type designation type selection dialogue: Applied in changeset commit:cdm-vaadin|d418263585cad48dcee5c576fb57a758b3022c3b. Andreas Müller
05:21 PM EDIT feature request #10261 (Closed): Avoid type designation type selection dialogue: The current selection dialogue for type designation types (name type designation or specimen type designation) is not... Andreas Müller
05:58 PM EDIT bug #10262: Switch longitude and latitude in GeoLocationField: please review Andreas Müller
05:57 PM EDIT bug #10262 (Resolved): Switch longitude and latitude in GeoLocationField: Applied in changeset commit:cdm-vaadin|7563c1bec4fcb0205b0609ceeef3c7482d9d06ab. Andreas Müller
05:55 PM EDIT bug #10262 (Closed): Switch longitude and latitude in GeoLocationField: Default for long and lat is to first mention latitude then longitude. So we need to switch the 2 fields in phycobank ... Andreas Müller
05:57 PM EDIT Revision f38c6be8 (cdm-vaadin): ref #10167 fix not updatable in-reference for submitters: Andreas Müller
05:56 PM EDIT Revision 7563c1be (cdm-vaadin): fix #10262 fix order for long and lat: Andreas Müller
05:37 PM EDIT Revision d4182635 (cdm-vaadin): fix #10261 remove type designation type selection dialogue: Andreas Müller
05:37 PM EDIT Revision 6ebd026b (cdm-vaadin): cleanup: Andreas Müller
05:25 PM EDIT Revision 187dedb7 (cdmlib): add default behavior to RegistrationIdentifierMinter (needed if configuration data is not available): Andreas Müller
05:24 PM EDIT Revision 3ffd4933 (cdmlib): add fromTypeAndId factory method to TypedEntityReference: Andreas Müller
05:24 PM EDIT Revision fe8f3afe (cdmlib): cleanup: Andreas Müller
05:23 PM EDIT Revision 5ca01306 (cdmlib): ref #10261 and rank class to name reference in registration DTO: Andreas Müller
03:36 PM EDIT Revision 3d377bb6 (cdmlib): cleanup: Andreas Müller
11:11 AM EDIT Revision 8676938f (cdm-vaadin): try fix compile error (cont.): Andreas Müller
11:05 AM EDIT Revision df764a3e (cdm-vaadin): try fix compile error: Andreas Müller
11:01 AM EDIT Revision 447eabe2 (cdm-vaadin): cleanup: Andreas Müller
09:46 AM EDIT Revision fcae1e02 (cdm-vaadin): cleanup: Andreas Müller

03/03/2023

09:31 PM EDIT task #9940: Handle type category formatting in compact typification strings: NoK:
Links als icon, ja stimmt ist besser. (Note by AM: later we discussed and checked on other pages that this is... Andreas Müller
02:17 PM EDIT feature request #10260: Add resolve mechanism to (external) identifiers: This is needed for #8840 Andreas Müller
02:17 PM EDIT feature request #10260 (Closed): Add resolve mechanism to (external) identifiers: Identifiers like the WFO-Name-ID should be resolvable. Currently they are usually stored as simple IDs, like "wfo-000... Andreas Müller
12:46 PM EDIT task #8840: Display identifiers in the dataportal: This is also relevant for e.g. WFO identifiers in E+M and others.
But be aware that WFO-IDs are name related. MCL ID... Andreas Müller
09:06 AM EDIT Revision 1342fa0d (cdm-server): adapt ssmtp.conf: Katja Luther
08:54 AM EDIT bug #8101: cdm-server docker container uses wrong timezone: This is solved for our servers, the docker container now uses CET, need some more research how to use the same timezo... Katja Luther
08:25 AM EDIT Revision 92bb3a9c (cdm-server): ref #10037: add smtp to docker container: Katja Luther

03/02/2023

11:01 PM EDIT Revision 6e5f28d8 (cdmlib): cleanup: Andreas Müller
03:17 PM EDIT Revision f1ef518f (taxeditor): ref #9766: use new method to get vocabulary by uuid to check whether a: vocabulary is default or not Katja Luther
03:15 PM EDIT Revision e623dcf9 (cdmlib): ref #9766: add method to get vocabulary by uuid: Katja Luther
03:14 PM EDIT bug #9766: CDM vocabularies should not be editable: I implemented it with the VocabularyEnum and it seems to work. I would commit it and you can have a look whether it i... Katja Luther
01:31 PM EDIT bug #9766: CDM vocabularies should not be editable: We could use the VocabularyEnum and add a method getVocabularyByUuid or a method to check whether a vocabulary is par... Katja Luther
02:40 PM EDIT task #8514 (In Progress): remove all PhycoBank redmine instances: Andreas Müller
02:35 PM EDIT task #8514: remove all PhycoBank redmine instances: https://redmine.phycobank.org/ links to production CDM Server. This redirect/alias needs to be removed. KL will care. Andreas Müller
02:34 PM EDIT task #8514: remove all PhycoBank redmine instances: AM:
Ich räume gerade bei Phycobank ein bisschen auf und bin dabei auf #8514 gestoßen, also "remove all PhycoBank r... Andreas Müller
02:22 PM EDIT bug #8101: cdm-server docker container uses wrong timezone: As you currently work on docker maybe you can find a solution for this issue. Andreas Müller
02:19 PM EDIT feature request #8082: cdm-server docker image allows running the cdm-server as non root user: This is not implemented yet. Katja Luther
02:07 PM EDIT feature request #8082: cdm-server docker image allows running the cdm-server as non root user: Can you check if this is still open. But has not so high priority I guess. Andreas Müller
12:53 PM EDIT bug #10259: Terms of the default vocabularies should not be moved or deleted: Katja Luther wrote in #note-6:
> There is a ticket already to avoid editing CDM vocabularies, maybe this is a duplic... Andreas Müller
12:43 PM EDIT bug #10259: Terms of the default vocabularies should not be moved or deleted: There is a ticket already to avoid editing CDM vocabularies, maybe this is a duplicate. Katja Luther
12:32 PM EDIT bug #10259: Terms of the default vocabularies should not be moved or deleted: Andreas Müller wrote in #note-1:
> This has only been reported for context menu related moving. In general it should... Katja Luther
11:51 AM EDIT bug #10259: Terms of the default vocabularies should not be moved or deleted: This has only been reported for context menu related moving. In general it should already be implemented (but better ... Andreas Müller
11:34 AM EDIT bug #10259 (New): Terms of the default vocabularies should not be moved or deleted: Currently the move of standard terms is not disabled, but should! Katja Luther
11:31 AM EDIT bug #10258 (New): Improve usability of term search dialog: The term search dialog for moving a term is originally the pure term search dialog developed for additivity. For the ... Katja Luther

03/01/2023

04:51 PM EDIT feature request #10255: Add additional option for sec reference handling: AM:
vielleicht können wir das „keep sec ref with name, no warning“ nennen, oder so. Andreas Müller
04:41 PM EDIT feature request #10255: Add additional option for sec reference handling: This is for swap and move. Andreas Müller
01:03 PM EDIT feature request #10255 (New): Add additional option for sec reference handling: We need an additional option for the secundum reference handling as preference. This option should allow different se... Katja Luther
04:46 PM PhycoBank task #6013 (Closed): Abgleich von Algennamen mit externen Quellen: Nein, nicht weiterverfolgt. Wolf-Henning Kusber
02:35 PM PhycoBank task #6013 (Feedback): Abgleich von Algennamen mit externen Quellen: Is this ticket still needed? Andreas Müller
02:55 PM EDIT feature request #10257 (New): Additional person identifiers: Beside ORCID we could add
* VIAF (VIrtual International Authority File)
* ISNI (International Standard Name Ide... Andreas Müller
02:52 PM EDIT bug #10256 (New): Quick person entry via identifier (ORCID, IPNI, ...) for taxeditor: copied from #9106
The data entry for persons could be simplified by a mechanism which fetches the details from an ... Andreas Müller
02:42 PM EDIT task #8201: test all delete functionality in the RegistrationUI: WHK:
All above issues are solved except for #note-19 (Eine Reference ist in der Cache-Anzeige nachdem sie gelösch... Andreas Müller
01:43 PM EDIT task #8201: test all delete functionality in the RegistrationUI: Test in Vaadin test (20023-03-01):
Article not linked to any registration can be deleted without problem.
.... Wolf-Henning Kusber
01:13 PM EDIT task #8201 (In Progress): test all delete functionality in the RegistrationUI: Andreas Müller
02:27 PM PhycoBank task #7012 (In Progress): Workflow with Pensoft: Andreas Müller
02:26 PM PhycoBank task #7012 (Closed): Workflow with Pensoft: Andreas Müller
02:23 PM PhycoBank task #7748: Genus name duplicates, Genus without reference: Is this still an open issue? Did you review? Andreas Müller
02:23 PM PhycoBank task #7812: Umgang mit invaliden höheren Taxonnamen für die Klassifikation: Is this still an open issue? Andreas Müller
02:21 PM EDIT task #7192: DwC-A of phycobank names for GBIF: Do these data issues still need to be fixed? Andreas Müller
02:19 PM PhycoBank task #7684: meaning of status rejected and according workflow: Is this still an open issue? If a new functionality is required according to the consideration in #note-2 please crea... Andreas Müller
02:13 PM PhycoBank task #8361: release portal vs. test portal: PLease close if this is fully fixed. Otherwise, please leave a note what needs to be done. Andreas Müller
01:20 PM EDIT feature request #6170 (Feedback): Selfregistration widget: Is this still an open issue? We already seem to have a UI for selfregistration which seems to cover this. If there ar... Andreas Müller
11:06 AM EDIT bug #9070 (Closed): Adapt preference page to feature.isAvailableFor...: This seems to work correctly. Follow up ticket for "occurrence features": #10254 Andreas Müller
11:02 AM EDIT feature request #10254 (New): Implement preference page for occurrence features: Copied from #9070
Preferences for features are now based on "available for". However, there is no "occurrence feat... Andreas Müller
10:54 AM EDIT bug #10158: Remove "Description Element" from view labels: Also we may add a short label for the fact, e.g. "Common Name: Sonnenblume (German, Germany)" using the according for... Andreas Müller
10:25 AM EDIT bug #10158: Remove "Description Element" from view labels: In the given context it might be enough to only show the feature label and fully remove "Description Element: ". Andreas Müller

02/28/2023

01:12 PM EDIT bug #10252: Session handling in name bulk editor not correct: Note: also here the first bulk editor (agent bulk editor) was open for multiple days already Andreas Müller
12:36 PM EDIT bug #10252: Session handling in name bulk editor not correct: It became even more strange. After closing all open editors (1 taxon editor and 1 agent bulk editor) and reopening th... Andreas Müller
12:21 PM EDIT bug #10252: Session handling in name bulk editor not correct: I observed a similar incorrect session handling in other situations already. However, I never inspected it so deeply. Andreas Müller
12:20 PM EDIT bug #10252: Session handling in name bulk editor not correct: Interesting is that it does show the correct java object when searching via uuid, but only when opening a new name bu... Andreas Müller
11:57 AM EDIT bug #10252 (New): Session handling in name bulk editor not correct: What I did:
I updated the name ×Euphrasia arctica × stricta. In an intermediate state it became ×Euphrasia arctica... Andreas Müller
12:43 PM EDIT bug #7699: NPE in CdmTransientEntityCacher.getCacheElement(): Very interesting is observation in #10252 which seems to be related. Andreas Müller
12:43 PM EDIT bug #7699: NPE in CdmTransientEntityCacher.getCacheElement(): AM 2023-01-28:
Schon wieder, nach Nacht, NameBulkeditor war noch offen, neue Anfrage
~~~
last remote service :... Andreas Müller
12:41 PM EDIT bug #7699: NPE in CdmTransientEntityCacher.getCacheElement(): AM 2023-01-27:
Cache Status, lange offen, aber kurz vorher genutzt, kurz vorher alle Fenster geschlossen und RefBu... Andreas Müller
11:08 AM EDIT bug #10193: OutOfMemory exception when exporting mexico flora: The problem is also relevant for E+M. Andreas Müller
09:17 AM EDIT bug #10251 (New): Feature tree label is empty representation after adding a new term: mail WB:
ich habe unter Window – Terms – Vocabulary – Feature – User defined feature
den Term Morphology hinzuge... Katja Luther

02/26/2023

06:18 PM EDIT bug #8167 (Closed): Permission denied for Submitter when adding section to newly created journal: Wolf-Henning Kusber
05:47 PM EDIT task #7811 (In Progress): Import higher classifications: Reopened for WoRMS and other classifications. Wolf-Henning Kusber
05:36 PM EDIT feature request #9685 (Closed): add separator between rule applied and code edition: Wolf-Henning Kusber
05:33 PM EDIT task #8209 (Closed): use ellypsed references for all reference comboboxes: Wolf-Henning Kusber

02/24/2023

12:26 PM EDIT bug #8953: Focus not correctly evaluated for details view when switching between names: Maybe related:
ERS: 2022-08
etwas lästig ist es, dass die Ansteuerung eines Taxons im Freitextbereich ziemlich ... Andreas Müller
12:21 PM EDIT task #10208: only use cacher for static terms: However, we need to be careful as the cacher uses ehcache. It must not have a timeout as in case of the terms cached ... Andreas Müller
11:27 AM EDIT Revision 1aa301ee (cdm-vaadin): ref #10072 update log4j.properties to log4j2.xml in launchers in vaadin (cont.): Andreas Müller
11:25 AM EDIT Revision 1284bc38 (cdmlib): ref #10072 update log4j.properties to log4j2.xml in launchers in cdmlib (cont.): Andreas Müller

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