Revision 313644ae
Added by Patrick Plitzner about 7 years ago
eu.etaxonomy.taxeditor.molecular/OSGI-INF/l10n/messages.properties | ||
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exportSequenceToFileHandlerIOErrorMessage=An error occurred when trying to export a consensus sequence alignment to the file "%s". |
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exportSequenceToFileHandlerIOErrorTitle=I/O error |
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exportSequenceToFileHandlerOverwriteTitle=Overwrite file |
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exportSequenceToFileHandlerOverwriteText=The file \"%s\" already exists.\n\nDo you want to overwrite it? |
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wizardExportAlignmentAppendExtensionButton=Append default extension |
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wizardExportAlignmentBrowseButton=Browse... |
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wizardExportAlignmentDataLabel=Select the data to export: |
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wizardExportAlignmentDescription=Define the output file and format. |
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wizardExportAlignmentDestinationLabel=Select the export destination: |
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wizardExportAlignmentErrorMissingFileName=The file name must not be empty. |
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wizardExportAlignmentErrorMissingSeqLabel=The consensus sequence label must not be empty. |
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wizardExportAlignmentErrorNothingToExport=Either single reads or the consensus sequence have to be selected for export. |
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wizardExportAlignmentExportConsensusSeqLabel=Export consensus sequence |
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wizardExportAlignmentExportFormatLabel=Select the export format: |
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wizardExportAlignmentExportSingleReads=Export single reads |
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wizardExportAlignmentFileDialogTitle=Export to |
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wizardExportAlignmentFileLabel=Alignment file: |
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wizardExportAlignmentTitle=Sequence export |
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wizardExportAlignmentWarningFileNameStartsDot=File starting with '.' are not supported on all operating systems. |
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wizardExportAlignmentwarningMissingExtension=The file name does have a valid extension for the selected format. |
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wizardExportAlignmentWarningFileExists=The file already exists and will be overwritten. |
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wizardExportAlignmentOptionsDescription=Specify additional export parameters. |
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wizardExportAlignmentOptionsTitle=Export options |
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wizardExportAlignmentExportedSeqHeading=Specify the sequences to be exported: |
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wizardExportAlignmentAdditionalOptionsHeading=Specify additional export options: |
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wizardExportAlignmentElongateSeqHeading=Elongate sequences to have equal length with: |
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wizardExportAlignmentElongateSeqMissingData=Missing data ('?')" |
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wizardExportAlignmentElongateSeqGap=Gap ('-') |
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AlignmentEditor_CUTTING_FAILURE=Cutting pherograms is only possible if exactly one row is selected. |
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AlignmentEditor_EDIT_MODE=Edit mode: |
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AlignmentEditor_ERROR_SINGLE_READ=Error |
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AlignmentEditor_ERROR_SINGLE_READ_MESSAGE=A single read was skipped because of the following error:\n\n |
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AlignmentEditor_INSERT=Insert |
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AlignmentEditor_INSERTION_PHEROGRAM=Insertion in pherogram: |
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AlignmentEditor_LEFT=Left |
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AlignmentEditor_LEFT_END_OUTSIDE=The left end of the selection lies outside the pherogram attached to this sequence. |
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AlignmentEditor_MUST_HAVE_TYPE=The editor input must have the type %s |
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AlignmentEditor_NEW_READ_FAILURE=Creating new reads from AlignmentEditor not implemented. |
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AlignmentEditor_NO_ATTACHED_PHEROGRAM=There is no pherogram attached to the current sequence. |
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AlignmentEditor_OVERWRITE=Overwrite |
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AlignmentEditor_RIGHT=Right |
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AlignmentEditor_RIGHT_END_OUTSIDE=The right end of the selection lies outside the pherogram attached to this sequence. |
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AlignmentEditor_SAVING_ALIGNMENT=Saving alignment |
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AlignmentEditorInput_EDITOR_NAME=AlignmentEditor |
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PherogramMouseListener_UNABLE_TO_CREATE_VIEW=Unable to create pherogram view |
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CutPherogramLeftHandler_CUT_FAILURE=Unable to cut base call sequence |
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CutPherogramRightHandler_CUT_FAILURE=Unable to cut base call sequence |
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EditSequenceHandler_COULD_NOT_OPEN=Could not open AlignmentEditor |
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HandlerTools_COULD_NOT_LOAD_ICON=Icon "%s" could not be loaded. |
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LoadPherogramHandler_AB1=AB1 pherogram files |
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LoadPherogramHandler_ALL=All files |
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LoadPherogramHandler_ALL_FORMATS=All supported formats |
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LoadPherogramHandler_IMPORT_PHEROGRAM=Import pherogram into contig alignment |
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LoadPherogramHandler_SCF=SCF pherogram files |
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LoadPherogramHandler_UNSUPPORTED_FORMAT=Unsupported format |
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LoadPherogramHandler_UNSUPPORTED_FORMAT_FILE=Unsupported format |
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LoadPherogramHandler_UNSUPPORTED_FORMAT_FILE_MESSAGE=An IO error occurred while trying to read the file |
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LoadPherogramHandler_UNSUPPORTED_FORMAT_MESSAGE=The format of the pherogram file "%s" is not supported. (Only AB1 and SCF are supported.) |
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ShowPherogramHandler_ERROR=Error |
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ShowPherogramHandler_NO_PHEROGRAM=No pherogram available |
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ShowPherogramHandler_NO_PHEROGRAM_MESSAGE=The selected read does not have an associated pherogram. |
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ToggleInsertOverwriteHandler_SWITCH_INSERTION=Click to switch to insertion mode |
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ToggleInsertOverwriteHandler_SWITCH_OVERWRITE=Click to switch to overwrite mode |
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ToggleLeftRightInsertionHandler_LEFT=Left |
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ToggleLeftRightInsertionHandler_RIGHT=Right |
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ToggleLeftRightInsertionHandler_SWITCH_LEFT=Switch to insert pherogram distorsions left of future edits. |
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ToggleLeftRightInsertionHandler_SWITCH_RIGHT=Switch to insert pherogram distorsions right of future edits. |
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AlignmentEditorPasteHandler_CANCEL=Cancel |
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AlignmentEditorPasteHandler_PASTE_FAILURE=Unable to paste multiple lines |
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AlignmentEditorPasteHandler_PASTE_FAILURE_MESSAGE=The current cursor height (%1$d) does not match the number of lines to be pasted (%2$d).%3$s%3$sYou can either change the cursor height accordingly or set the cursor height to one allowing you to paste all lines from the clipboard into one sequence. |
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AlignmentEditorPasteHandler_PASTING_LINES=Pasting multiple lines |
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AlignmentEditorPasteHandler_PASTING_LINES_FIRST_LINE=Only paste the first line from the clipboard |
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AlignmentEditorPasteHandler_PASTING_LINES_IGNORE=Ignore line breaks and paste as one sequence |
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AlignmentEditorPasteHandler_PASTING_LINES_QUESTION=The text to be pasted contains mutlitple lines (%d) although the current cursor height is 1. What do you want to do? |
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CDMPherogramAlignmentObjectTranslator_NOT_IMPLEMENTED=Not implemented. |
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CDMSequenceMatrixAdapter_EITHER_MUST_BE_TRUE=Either exportConsensus or exportSingleReads must be true. Otherwise no sequences would be contained in this matrix. |
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CDMSequenceMatrixAdapter_NO_SEQUENCE_FOUND=No sequence with the ID "%d" could be found. |
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SequenceIDIterator_NO_MORE_SEQUENCES=There are no more sequence IDs availble from this iterator. |
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SequenceIDIterator_REMOVE_NOT_SUPPORTED=This iterator does not support removing elements. |
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ExportSingleReadAlignmentWizard_EXPORT_SINGLE_READ=Export single read alignment |
eu.etaxonomy.taxeditor.molecular/OSGI-INF/l10n/messages_de.properties | ||
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exportSequenceToFileHandlerIOErrorMessage=Beim Schreiben der Datei "%s" ist ein Fehler aufgetreten. |
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exportSequenceToFileHandlerIOErrorTitle=E/A Fehler |
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exportSequenceToFileHandlerOverwriteTitle=Datei ?berschreiben |
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exportSequenceToFileHandlerOverwriteText=Die Datei \"%s\" existiert bereits.\n\nSoll sie ?berschrieben werden? |
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wizardExportAlignmentAppendExtensionButton=Standarddateiendung anh?ngen |
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wizardExportAlignmentBrowseButton=Durchsuchen... |
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wizardExportAlignmentDataLabel=Zu exportierende Daten: |
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wizardExportAlignmentDescription=W?hlen Sie den Zielort und das Zielformat aus! |
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wizardExportAlignmentDestinationLabel=Zieldatei: |
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wizardExportAlignmentErrorMissingFileName=Der Dateiname darf nicht leer sein. |
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wizardExportAlignmentErrorMissingSeqLabel=Der Name der Konsensussequenz darf nicht leer sein. |
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wizardExportAlignmentErrorNothingToExport=Es m?ssen entweder die einzelnen Reads oder die Konsensussequenz zum Export ausgew?hlt werden. |
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wizardExportAlignmentExportConsensusSeqLabel=Konsensussequenz exportieren |
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wizardExportAlignmentExportFormatLabel=Zielformat: |
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wizardExportAlignmentExportSingleReads=Einzelne Reads exportieren |
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wizardExportAlignmentFileDialogTitle=Exportieren nach |
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wizardExportAlignmentFileLabel=Alignment Datei: |
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wizardExportAlignmentTitle=Sequenzexport |
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wizardExportAlignmentWarningFileNameStartsDot=Dateinamen, die mit einem '.' beginnen, werden nicht auf allen Betriebssystemen unterst?tzt. |
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wizardExportAlignmentwarningMissingExtension=Der momentane Dateiname hat keine zum aktuellen Format passende Endung. |
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wizardExportAlignmentWarningFileExists=The existiert bereits und w?rde ?berschrieben. |
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wizardExportAlignmentOptionsDescription=Geben Sie weitere Exportparameter an! |
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wizardExportAlignmentOptionsTitle=Exportoptionen |
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wizardExportAlignmentExportedSeqHeading=Zu exportierende Sequenzen: |
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wizardExportAlignmentAdditionalOptionsHeading=Erweiterte Exportoptionen: |
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wizardExportAlignmentElongateSeqHeading=Sequenzen auf einheitliche L?nge bringen mit: |
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wizardExportAlignmentElongateSeqMissingData=Fehlende Daten ('?')" |
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wizardExportAlignmentElongateSeqGap=L?cke ('-') |
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AlignmentEditor_CUTTING_FAILURE=Beschneiden des Pherogramms ist nur m?glich, wenn exakt eine Reihe ausgew?hlt ist. |
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AlignmentEditor_EDIT_MODE=Editier-Modus: |
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AlignmentEditor_ERROR_SINGLE_READ=Error |
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AlignmentEditor_ERROR_SINGLE_READ_MESSAGE=Ein Single-Read wurde ?bersprungen wegen folgendem Fehler:\n\n |
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AlignmentEditor_INSERT=Einf?gen |
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AlignmentEditor_INSERTION_PHEROGRAM=Einf?gen in Pherogrammm: |
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AlignmentEditor_LEFT=Links |
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AlignmentEditor_LEFT_END_OUTSIDE=Das linke Ende der Auswahl liegt au?erhalb des Pherogramms dieser Sequenz. |
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AlignmentEditor_MUST_HAVE_TYPE=Der Editor-Input muss vom Typ %s sein |
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AlignmentEditor_NEW_READ_FAILURE=Das Erzeugen neuer Reads im Alignment-Editor ist nicht implementiert. |
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AlignmentEditor_NO_ATTACHED_PHEROGRAM=Die ausgew?hlte Sequenz hat kein angehangenes Pherogramm. |
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AlignmentEditor_OVERWRITE=?berschreiben |
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AlignmentEditor_RIGHT=REchts |
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AlignmentEditor_RIGHT_END_OUTSIDE=Das rechte Ende der Auswahl liegt au?erhalb des Pherogramms dieser Sequenz. |
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AlignmentEditor_SAVING_ALIGNMENT=Alignment speichern |
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AlignmentEditorInput_EDITOR_NAME=Alignment-Editor |
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PherogramMouseListener_UNABLE_TO_CREATE_VIEW=Pherogram-View konnte nicht erstellt werden |
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CutPherogramLeftHandler_CUT_FAILURE=Base-Call-Sequenz konnte nicht beschnitten werden |
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CutPherogramRightHandler_CUT_FAILURE=Base-Call-Sequenz konnte nicht beschnitten werden |
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EditSequenceHandler_COULD_NOT_OPEN=Alignment-Editor konnte nicht ge?ffnet werden |
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HandlerTools_COULD_NOT_LOAD_ICON=Icon "%s" konnte nicht geladen werden. |
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LoadPherogramHandler_AB1=AB1 Pherogramm-Dateien |
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LoadPherogramHandler_ALL=Alle Dateien |
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LoadPherogramHandler_ALL_FORMATS=Alle unterst?tzten Formate |
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LoadPherogramHandler_IMPORT_PHEROGRAM=Pherogramm in Contig-Alignment importieren |
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LoadPherogramHandler_SCF=SCF Pherogramm-Dateien |
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LoadPherogramHandler_UNSUPPORTED_FORMAT=Nicht unterst?tztes Format |
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LoadPherogramHandler_UNSUPPORTED_FORMAT_FILE=Nicht unterst?tztes Format |
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LoadPherogramHandler_UNSUPPORTED_FORMAT_FILE_MESSAGE=IO-Fehler beim Lesen der Datei |
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LoadPherogramHandler_UNSUPPORTED_FORMAT_MESSAGE=Das Format der Pherogramm-Datei "%s" wird nicht unterst?tzt. (Nur AB1 und SCF werden unterst?tzt.) |
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ShowPherogramHandler_ERROR=Error |
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ShowPherogramHandler_NO_PHEROGRAM=Kein Pherogramm verf?gbar |
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ShowPherogramHandler_NO_PHEROGRAM_MESSAGE=Der ausgew?hlte Read hat kein Pherogramm |
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ToggleInsertOverwriteHandler_SWITCH_INSERTION=Klicken, um zum Einf?gen-Modus zu wechseln |
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ToggleInsertOverwriteHandler_SWITCH_OVERWRITE=Klicken, um zum ?berschreiben-Modus zu wechseln |
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ToggleLeftRightInsertionHandler_LEFT=Links |
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ToggleLeftRightInsertionHandler_RIGHT=Rechts |
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ToggleLeftRightInsertionHandler_SWITCH_LEFT=Wechseln, um Pherogramm-Verzerrungen linksseitig einzuf?gen. |
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ToggleLeftRightInsertionHandler_SWITCH_RIGHT=Wechseln, um Pherogramm-Verzerrungen rechtsseitig einzuf?gen. |
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AlignmentEditorPasteHandler_CANCEL=Abbrechen |
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AlignmentEditorPasteHandler_PASTE_FAILURE=Konnte mehrere Zeilen nicht einf?gen |
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AlignmentEditorPasteHandler_PASTE_FAILURE_MESSAGE=Die aktuelle Cursor-Auswahl (%1$d) stimmt nicht mit der Anzahl der einzuf?genden Zeilen (%2$d) ?berein.%3$s%3$sSie k?nnen die Cursor-Auswahl entsprechend anpassen oder die Auswahl auf eine Zeile einschr?nken, um alle Zeilen aus dem Clipboard in die Sequenz einzuf?gen. |
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AlignmentEditorPasteHandler_PASTING_LINES=F?ge mehrere Zeilen ein |
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AlignmentEditorPasteHandler_PASTING_LINES_FIRST_LINE=F?ge nur die erste Zeile aus dem Clipboard ein |
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AlignmentEditorPasteHandler_PASTING_LINES_IGNORE=Zeilenumbr?che ignorieren und als eine Sequenz einf?gen |
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AlignmentEditorPasteHandler_PASTING_LINES_QUESTION=Der einzuf?gende Text enth?lt mehrere Zeilen (%d), obwohl die aktuelle Cursor-Auswahl 1 ist. Was wollen Sie tun? |
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CDMPherogramAlignmentObjectTranslator_NOT_IMPLEMENTED=Nicht implementiert. |
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CDMSequenceMatrixAdapter_EITHER_MUST_BE_TRUE=Entweder exportConsensus oder exportSingleReads muss angew?hlt sein. Ansonsten sind keine Sequenzen in der Matrix enthalten. |
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CDMSequenceMatrixAdapter_NO_SEQUENCE_FOUND=Sequenz mit der ID "%d" konnte nicht gefunden werden. |
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SequenceIDIterator_NO_MORE_SEQUENCES=Dieser Iterator hat keine weiteren Sequenz-IDs. |
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SequenceIDIterator_REMOVE_NOT_SUPPORTED=Dieser Iterator unterst?tzt das Entfernen von Elementen nicht. |
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ExportSingleReadAlignmentWizard_EXPORT_SINGLE_READ=Exportiere Single-Read-Alignment |
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/Messages.java | ||
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/** |
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* Copyright (C) 2016 EDIT |
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* European Distributed Institute of Taxonomy |
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* http://www.e-taxonomy.eu |
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* |
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* The contents of this file are subject to the Mozilla Public License Version 1.1 |
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* See LICENSE.TXT at the top of this package for the full license terms. |
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*/ |
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package eu.etaxonomy.taxeditor.molecular; |
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import org.eclipse.osgi.util.NLS; |
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/** |
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* Provides messages and texts for classes of the molecular plugin. |
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* |
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* @author Ben Stöver |
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* @date 17.11.2016 |
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*/ |
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public class Messages extends NLS { |
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private static final String BUNDLE_NAME = "OSGI-INF/l10n/messages"; //$NON-NLS-1$ |
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public static String AlignmentEditor_CUTTING_FAILURE; |
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public static String AlignmentEditor_EDIT_MODE; |
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public static String AlignmentEditor_ERROR_SINGLE_READ; |
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public static String AlignmentEditor_ERROR_SINGLE_READ_MESSAGE; |
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public static String AlignmentEditor_INSERT; |
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public static String AlignmentEditor_INSERTION_PHEROGRAM; |
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public static String AlignmentEditor_LEFT; |
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public static String AlignmentEditor_LEFT_END_OUTSIDE; |
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public static String AlignmentEditor_MUST_HAVE_TYPE; |
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public static String AlignmentEditor_NEW_READ_FAILURE; |
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public static String AlignmentEditor_NO_ATTACHED_PHEROGRAM; |
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public static String AlignmentEditor_OVERWRITE; |
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public static String AlignmentEditor_RIGHT; |
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public static String AlignmentEditor_RIGHT_END_OUTSIDE; |
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public static String AlignmentEditor_SAVING_ALIGNMENT; |
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public static String AlignmentEditorInput_EDITOR_NAME; |
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public static String AlignmentEditorPasteHandler_CANCEL; |
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public static String AlignmentEditorPasteHandler_PASTE_FAILURE; |
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public static String AlignmentEditorPasteHandler_PASTE_FAILURE_MESSAGE; |
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public static String AlignmentEditorPasteHandler_PASTING_LINES; |
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public static String AlignmentEditorPasteHandler_PASTING_LINES_FIRST_LINE; |
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public static String AlignmentEditorPasteHandler_PASTING_LINES_IGNORE; |
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public static String AlignmentEditorPasteHandler_PASTING_LINES_QUESTION; |
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public static String CDMPherogramAlignmentObjectTranslator_NOT_IMPLEMENTED; |
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public static String CDMSequenceMatrixAdapter_EITHER_MUST_BE_TRUE; |
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public static String CDMSequenceMatrixAdapter_NO_SEQUENCE_FOUND; |
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public static String CutPherogramLeftHandler_CUT_FAILURE; |
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public static String CutPherogramRightHandler_CUT_FAILURE; |
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public static String EditSequenceHandler_COULD_NOT_OPEN; |
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public static String ExportSingleReadAlignmentWizard_EXPORT_SINGLE_READ; |
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public static String exportSequenceToFileHandlerIOErrorMessage; |
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public static String exportSequenceToFileHandlerIOErrorTitle; |
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public static String exportSequenceToFileHandlerOverwriteTitle; |
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public static String exportSequenceToFileHandlerOverwriteText; |
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public static String HandlerTools_COULD_NOT_LOAD_ICON; |
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public static String LoadPherogramHandler_AB1; |
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public static String LoadPherogramHandler_ALL; |
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public static String LoadPherogramHandler_ALL_FORMATS; |
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public static String LoadPherogramHandler_IMPORT_PHEROGRAM; |
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public static String LoadPherogramHandler_SCF; |
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public static String LoadPherogramHandler_UNSUPPORTED_FORMAT; |
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public static String LoadPherogramHandler_UNSUPPORTED_FORMAT_FILE; |
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public static String LoadPherogramHandler_UNSUPPORTED_FORMAT_FILE_MESSAGE; |
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public static String LoadPherogramHandler_UNSUPPORTED_FORMAT_MESSAGE; |
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public static String PherogramMouseListener_UNABLE_TO_CREATE_VIEW; |
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public static String SequenceIDIterator_NO_MORE_SEQUENCES; |
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public static String SequenceIDIterator_REMOVE_NOT_SUPPORTED; |
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public static String ShowPherogramHandler_ERROR; |
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public static String ShowPherogramHandler_NO_PHEROGRAM; |
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public static String ShowPherogramHandler_NO_PHEROGRAM_MESSAGE; |
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public static String ToggleInsertOverwriteHandler_SWITCH_INSERTION; |
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public static String ToggleInsertOverwriteHandler_SWITCH_OVERWRITE; |
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public static String ToggleLeftRightInsertionHandler_LEFT; |
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public static String ToggleLeftRightInsertionHandler_RIGHT; |
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public static String ToggleLeftRightInsertionHandler_SWITCH_LEFT; |
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public static String ToggleLeftRightInsertionHandler_SWITCH_RIGHT; |
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public static String wizardExportAlignmentAppendExtensionButton; |
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public static String wizardExportAlignmentBrowseButton; |
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public static String wizardExportAlignmentDataLabel; |
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public static String wizardExportAlignmentDescription; |
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public static String wizardExportAlignmentDestinationLabel; |
|
192 |
public static String wizardExportAlignmentErrorMissingFileName; |
|
193 |
public static String wizardExportAlignmentErrorMissingSeqLabel; |
|
194 |
public static String wizardExportAlignmentErrorNothingToExport; |
|
195 |
public static String wizardExportAlignmentExportConsensusSeqLabel; |
|
196 |
public static String wizardExportAlignmentExportFormatLabel; |
|
197 |
public static String wizardExportAlignmentExportSingleReads; |
|
198 |
public static String wizardExportAlignmentFileDialogTitle; |
|
199 |
public static String wizardExportAlignmentFileLabel; |
|
200 |
public static String wizardExportAlignmentOptionsDescription; |
|
201 |
public static String wizardExportAlignmentOptionsTitle; |
|
202 |
public static String wizardExportAlignmentTitle; |
|
203 |
public static String wizardExportAlignmentWarningFileNameStartsDot; |
|
204 |
public static String wizardExportAlignmentwarningMissingExtension; |
|
205 |
public static String wizardExportAlignmentWarningFileExists; |
|
206 |
public static String wizardExportAlignmentExportedSeqHeading; |
|
207 |
public static String wizardExportAlignmentAdditionalOptionsHeading; |
|
208 |
public static String wizardExportAlignmentElongateSeqHeading; |
|
209 |
public static String wizardExportAlignmentElongateSeqMissingData; |
|
210 |
public static String wizardExportAlignmentElongateSeqGap; |
|
211 |
|
|
212 |
|
|
213 |
static { |
|
214 |
// initialize resource bundle |
|
215 |
NLS.initializeMessages(BUNDLE_NAME, Messages.class); |
|
216 |
} |
|
217 |
|
|
218 |
private Messages() {} |
|
219 |
} |
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/editor/AlignmentEditor.java | ||
---|---|---|
45 | 45 |
import eu.etaxonomy.cdm.model.molecular.SingleRead; |
46 | 46 |
import eu.etaxonomy.cdm.model.molecular.SingleReadAlignment; |
47 | 47 |
import eu.etaxonomy.taxeditor.model.MessagingUtils; |
48 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
49 | 48 |
import eu.etaxonomy.taxeditor.molecular.TaxeditorMolecularPlugin; |
50 | 49 |
import eu.etaxonomy.taxeditor.molecular.handler.ToggleInsertOverwriteHandler; |
51 | 50 |
import eu.etaxonomy.taxeditor.molecular.handler.ToggleLeftRightInsertionHandler; |
51 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages; |
|
52 | 52 |
import eu.etaxonomy.taxeditor.store.CdmStore; |
53 | 53 |
import eu.etaxonomy.taxeditor.view.derivateSearch.DerivateLabelProvider; |
54 | 54 |
import info.bioinfweb.commons.swt.SWTUtils; |
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/editor/AlignmentEditorInput.java | ||
---|---|---|
20 | 20 |
import eu.etaxonomy.cdm.api.service.molecular.ISequenceService; |
21 | 21 |
import eu.etaxonomy.cdm.model.molecular.Sequence; |
22 | 22 |
import eu.etaxonomy.taxeditor.editor.CdmEntitySessionInput; |
23 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
23 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages;
|
|
24 | 24 |
import eu.etaxonomy.taxeditor.store.CdmStore; |
25 | 25 |
|
26 | 26 |
|
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/editor/PherogramMouseListener.java | ||
---|---|---|
16 | 16 |
import org.eclipse.ui.PartInitException; |
17 | 17 |
|
18 | 18 |
import eu.etaxonomy.taxeditor.model.MessagingUtils; |
19 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
20 | 19 |
import eu.etaxonomy.taxeditor.molecular.TaxeditorMolecularPlugin; |
21 | 20 |
import eu.etaxonomy.taxeditor.molecular.handler.ShowPherogramHandler; |
21 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages; |
|
22 | 22 |
|
23 | 23 |
|
24 | 24 |
|
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/AlignmentEditorPasteHandler.java | ||
---|---|---|
13 | 13 |
import org.eclipse.ui.handlers.HandlerUtil; |
14 | 14 |
import org.eclipse.ui.menus.UIElement; |
15 | 15 |
|
16 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
17 | 16 |
import eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor; |
17 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages; |
|
18 | 18 |
import info.bioinfweb.libralign.alignmentarea.AlignmentArea; |
19 | 19 |
import info.bioinfweb.libralign.alignmentarea.order.SequenceOrder; |
20 | 20 |
import info.bioinfweb.libralign.alignmentarea.selection.SelectionModel; |
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/CutPherogramLeftHandler.java | ||
---|---|---|
13 | 13 |
import org.eclipse.core.commands.ExecutionException; |
14 | 14 |
|
15 | 15 |
import eu.etaxonomy.taxeditor.model.MessagingUtils; |
16 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
17 | 16 |
import eu.etaxonomy.taxeditor.molecular.TaxeditorMolecularPlugin; |
18 | 17 |
import eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor; |
18 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages; |
|
19 | 19 |
|
20 | 20 |
|
21 | 21 |
|
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/CutPherogramRightHandler.java | ||
---|---|---|
13 | 13 |
import org.eclipse.core.commands.ExecutionException; |
14 | 14 |
|
15 | 15 |
import eu.etaxonomy.taxeditor.model.MessagingUtils; |
16 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
17 | 16 |
import eu.etaxonomy.taxeditor.molecular.TaxeditorMolecularPlugin; |
18 | 17 |
import eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor; |
18 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages; |
|
19 | 19 |
|
20 | 20 |
|
21 | 21 |
|
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/EditSequenceHandler.java | ||
---|---|---|
11 | 11 |
|
12 | 12 |
import eu.etaxonomy.cdm.model.molecular.Sequence; |
13 | 13 |
import eu.etaxonomy.taxeditor.editor.EditorUtil; |
14 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
15 | 14 |
import eu.etaxonomy.taxeditor.molecular.TaxeditorMolecularPlugin; |
16 | 15 |
import eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor; |
17 | 16 |
import eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditorInput; |
17 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages; |
|
18 | 18 |
|
19 | 19 |
|
20 | 20 |
|
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/ExportSequenceToFileHandler.java | ||
---|---|---|
32 | 32 |
import eu.etaxonomy.cdm.model.molecular.Sequence; |
33 | 33 |
import eu.etaxonomy.taxeditor.editor.EditorUtil; |
34 | 34 |
import eu.etaxonomy.taxeditor.model.MessagingUtils; |
35 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
36 | 35 |
import eu.etaxonomy.taxeditor.molecular.TaxeditorMolecularPlugin; |
37 | 36 |
import eu.etaxonomy.taxeditor.molecular.io.CDMPherogramAlignmentObjectTranslator; |
38 | 37 |
import eu.etaxonomy.taxeditor.molecular.io.CDMSequenceMatrixAdapter; |
39 | 38 |
import eu.etaxonomy.taxeditor.molecular.io.SingleReadAlignmentRDFXMLConstants; |
40 | 39 |
import eu.etaxonomy.taxeditor.molecular.io.wizard.ExportSingleReadAlignmentWizard; |
40 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages; |
|
41 | 41 |
import eu.etaxonomy.taxeditor.util.ApplicationUtil; |
42 | 42 |
|
43 | 43 |
|
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/HandlerTools.java | ||
---|---|---|
15 | 15 |
import org.eclipse.core.runtime.Path; |
16 | 16 |
import org.eclipse.jface.resource.ImageDescriptor; |
17 | 17 |
|
18 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
19 | 18 |
import eu.etaxonomy.taxeditor.molecular.TaxeditorMolecularPlugin; |
19 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages; |
|
20 | 20 |
|
21 | 21 |
|
22 | 22 |
|
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/LoadPherogramHandler.java | ||
---|---|---|
21 | 21 |
|
22 | 22 |
import eu.etaxonomy.taxeditor.model.AbstractUtility; |
23 | 23 |
import eu.etaxonomy.taxeditor.model.MessagingUtils; |
24 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
25 | 24 |
import eu.etaxonomy.taxeditor.molecular.TaxeditorMolecularPlugin; |
26 | 25 |
import eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor; |
26 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages; |
|
27 | 27 |
|
28 | 28 |
|
29 | 29 |
|
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/ShowPherogramHandler.java | ||
---|---|---|
17 | 17 |
import eu.etaxonomy.cdm.model.molecular.SingleRead; |
18 | 18 |
import eu.etaxonomy.taxeditor.editor.EditorUtil; |
19 | 19 |
import eu.etaxonomy.taxeditor.model.MessagingUtils; |
20 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
21 | 20 |
import eu.etaxonomy.taxeditor.molecular.TaxeditorMolecularPlugin; |
22 | 21 |
import eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor; |
23 | 22 |
import eu.etaxonomy.taxeditor.molecular.editor.PherogramViewPart; |
23 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages; |
|
24 | 24 |
|
25 | 25 |
|
26 | 26 |
|
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/ToggleInsertOverwriteHandler.java | ||
---|---|---|
22 | 22 |
import org.eclipse.ui.menus.UIElement; |
23 | 23 |
|
24 | 24 |
import eu.etaxonomy.taxeditor.model.AbstractUtility; |
25 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
26 | 25 |
import eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor; |
26 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages; |
|
27 | 27 |
|
28 | 28 |
|
29 | 29 |
|
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/ToggleLeftRightInsertionHandler.java | ||
---|---|---|
19 | 19 |
import org.eclipse.ui.menus.UIElement; |
20 | 20 |
|
21 | 21 |
import eu.etaxonomy.taxeditor.model.AbstractUtility; |
22 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
23 | 22 |
import eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor; |
23 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages; |
|
24 | 24 |
|
25 | 25 |
|
26 | 26 |
|
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/CDMPherogramAlignmentObjectTranslator.java | ||
---|---|---|
23 | 23 |
import javax.xml.stream.XMLStreamWriter; |
24 | 24 |
|
25 | 25 |
import eu.etaxonomy.cdm.model.molecular.SingleReadAlignment; |
26 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
26 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages;
|
|
27 | 27 |
|
28 | 28 |
|
29 | 29 |
|
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/CDMSequenceMatrixAdapter.java | ||
---|---|---|
21 | 21 |
|
22 | 22 |
import eu.etaxonomy.cdm.model.molecular.Sequence; |
23 | 23 |
import eu.etaxonomy.cdm.model.molecular.SingleReadAlignment; |
24 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
25 | 24 |
import eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor; |
25 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages; |
|
26 | 26 |
import info.bioinfweb.commons.bio.CharacterStateSetType; |
27 | 27 |
import info.bioinfweb.commons.io.W3CXSConstants; |
28 | 28 |
import info.bioinfweb.commons.text.StringUtils; |
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/SequenceIDIterator.java | ||
---|---|---|
12 | 12 |
import java.util.Iterator; |
13 | 13 |
import java.util.NoSuchElementException; |
14 | 14 |
|
15 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
15 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages;
|
|
16 | 16 |
|
17 | 17 |
|
18 | 18 |
|
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/wizard/ExportSingleReadAlignmentFileFormatPage.java | ||
---|---|---|
37 | 37 |
import org.eclipse.swt.widgets.Label; |
38 | 38 |
import org.eclipse.swt.widgets.Text; |
39 | 39 |
|
40 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
40 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages;
|
|
41 | 41 |
|
42 | 42 |
|
43 | 43 |
|
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/wizard/ExportSingleReadAlignmentOptionsPage.java | ||
---|---|---|
28 | 28 |
import org.eclipse.swt.widgets.Label; |
29 | 29 |
import org.eclipse.swt.widgets.Text; |
30 | 30 |
|
31 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
31 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages;
|
|
32 | 32 |
|
33 | 33 |
|
34 | 34 |
|
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/wizard/ExportSingleReadAlignmentWizard.java | ||
---|---|---|
12 | 12 |
|
13 | 13 |
import org.eclipse.jface.wizard.Wizard; |
14 | 14 |
|
15 |
import eu.etaxonomy.taxeditor.molecular.Messages; |
|
15 |
import eu.etaxonomy.taxeditor.molecular.l10n.Messages;
|
|
16 | 16 |
|
17 | 17 |
|
18 | 18 |
|
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/l10n/Messages.java | ||
---|---|---|
1 |
/** |
|
2 |
* Copyright (C) 2016 EDIT |
|
3 |
* European Distributed Institute of Taxonomy |
|
4 |
* http://www.e-taxonomy.eu |
|
5 |
* |
|
6 |
* The contents of this file are subject to the Mozilla Public License Version 1.1 |
|
7 |
* See LICENSE.TXT at the top of this package for the full license terms. |
|
8 |
*/ |
|
9 |
package eu.etaxonomy.taxeditor.molecular.l10n; |
|
10 |
|
|
11 |
|
|
12 |
import org.eclipse.osgi.util.NLS; |
|
13 |
|
|
14 |
|
|
15 |
|
|
16 |
/** |
|
17 |
* Provides messages and texts for classes of the molecular plugin. |
|
18 |
* |
|
19 |
* @author Ben Stöver |
|
20 |
* @date 17.11.2016 |
|
21 |
*/ |
|
22 |
public class Messages extends NLS { |
|
23 |
private static final String BUNDLE_NAME = "OSGI-INF/l10n/messages"; //$NON-NLS-1$ |
|
24 |
|
|
25 |
|
|
26 |
public static String AlignmentEditor_CUTTING_FAILURE; |
|
27 |
|
|
28 |
|
|
29 |
public static String AlignmentEditor_EDIT_MODE; |
|
30 |
|
|
31 |
|
|
32 |
public static String AlignmentEditor_ERROR_SINGLE_READ; |
|
33 |
|
|
34 |
|
|
35 |
public static String AlignmentEditor_ERROR_SINGLE_READ_MESSAGE; |
|
36 |
|
|
37 |
|
|
38 |
public static String AlignmentEditor_INSERT; |
|
39 |
|
|
40 |
|
|
41 |
public static String AlignmentEditor_INSERTION_PHEROGRAM; |
|
42 |
|
|
43 |
|
|
44 |
public static String AlignmentEditor_LEFT; |
|
45 |
|
|
46 |
|
|
47 |
public static String AlignmentEditor_LEFT_END_OUTSIDE; |
|
48 |
|
|
49 |
|
|
50 |
public static String AlignmentEditor_MUST_HAVE_TYPE; |
|
51 |
|
|
52 |
|
|
53 |
public static String AlignmentEditor_NEW_READ_FAILURE; |
|
54 |
|
|
55 |
|
|
56 |
public static String AlignmentEditor_NO_ATTACHED_PHEROGRAM; |
|
57 |
|
|
58 |
|
|
59 |
public static String AlignmentEditor_OVERWRITE; |
|
60 |
|
|
61 |
|
|
62 |
public static String AlignmentEditor_RIGHT; |
|
63 |
|
|
64 |
|
|
65 |
public static String AlignmentEditor_RIGHT_END_OUTSIDE; |
|
66 |
|
|
67 |
|
|
68 |
public static String AlignmentEditor_SAVING_ALIGNMENT; |
|
69 |
|
|
70 |
|
|
71 |
public static String AlignmentEditorInput_EDITOR_NAME; |
|
72 |
|
|
73 |
|
|
74 |
public static String AlignmentEditorPasteHandler_CANCEL; |
|
75 |
|
|
76 |
|
|
77 |
public static String AlignmentEditorPasteHandler_PASTE_FAILURE; |
|
78 |
|
|
79 |
|
|
80 |
public static String AlignmentEditorPasteHandler_PASTE_FAILURE_MESSAGE; |
|
81 |
|
|
82 |
|
|
83 |
public static String AlignmentEditorPasteHandler_PASTING_LINES; |
|
84 |
|
|
85 |
|
|
86 |
public static String AlignmentEditorPasteHandler_PASTING_LINES_FIRST_LINE; |
|
87 |
|
|
88 |
|
|
89 |
public static String AlignmentEditorPasteHandler_PASTING_LINES_IGNORE; |
|
90 |
|
|
91 |
|
|
92 |
public static String AlignmentEditorPasteHandler_PASTING_LINES_QUESTION; |
|
93 |
|
|
94 |
|
|
95 |
public static String CDMPherogramAlignmentObjectTranslator_NOT_IMPLEMENTED; |
|
96 |
|
|
97 |
|
|
98 |
public static String CDMSequenceMatrixAdapter_EITHER_MUST_BE_TRUE; |
|
99 |
|
|
100 |
|
|
101 |
public static String CDMSequenceMatrixAdapter_NO_SEQUENCE_FOUND; |
|
102 |
|
|
103 |
|
|
104 |
public static String CutPherogramLeftHandler_CUT_FAILURE; |
|
105 |
|
|
106 |
|
|
107 |
public static String CutPherogramRightHandler_CUT_FAILURE; |
|
108 |
|
|
109 |
|
|
110 |
public static String EditSequenceHandler_COULD_NOT_OPEN; |
|
111 |
|
|
112 |
|
|
113 |
public static String ExportSingleReadAlignmentWizard_EXPORT_SINGLE_READ; |
|
114 |
|
|
115 |
|
|
116 |
public static String exportSequenceToFileHandlerIOErrorMessage; |
|
117 |
public static String exportSequenceToFileHandlerIOErrorTitle; |
|
118 |
public static String exportSequenceToFileHandlerOverwriteTitle; |
|
119 |
public static String exportSequenceToFileHandlerOverwriteText; |
|
120 |
|
|
121 |
|
|
122 |
public static String HandlerTools_COULD_NOT_LOAD_ICON; |
|
123 |
|
|
124 |
|
|
125 |
public static String LoadPherogramHandler_AB1; |
|
126 |
|
|
127 |
|
|
128 |
public static String LoadPherogramHandler_ALL; |
|
129 |
|
|
130 |
|
|
131 |
public static String LoadPherogramHandler_ALL_FORMATS; |
|
132 |
|
|
133 |
|
|
134 |
public static String LoadPherogramHandler_IMPORT_PHEROGRAM; |
|
135 |
|
|
136 |
|
|
137 |
public static String LoadPherogramHandler_SCF; |
|
138 |
|
|
139 |
|
|
140 |
public static String LoadPherogramHandler_UNSUPPORTED_FORMAT; |
|
141 |
|
|
142 |
|
|
143 |
public static String LoadPherogramHandler_UNSUPPORTED_FORMAT_FILE; |
|
144 |
|
|
145 |
|
|
146 |
public static String LoadPherogramHandler_UNSUPPORTED_FORMAT_FILE_MESSAGE; |
|
147 |
|
|
148 |
|
|
149 |
public static String LoadPherogramHandler_UNSUPPORTED_FORMAT_MESSAGE; |
|
150 |
|
|
151 |
|
|
152 |
public static String PherogramMouseListener_UNABLE_TO_CREATE_VIEW; |
|
153 |
|
|
154 |
public static String SequenceIDIterator_NO_MORE_SEQUENCES; |
|
155 |
|
|
156 |
|
|
157 |
public static String SequenceIDIterator_REMOVE_NOT_SUPPORTED; |
|
158 |
|
|
159 |
|
|
160 |
public static String ShowPherogramHandler_ERROR; |
|
161 |
|
|
162 |
|
|
163 |
public static String ShowPherogramHandler_NO_PHEROGRAM; |
|
164 |
|
|
165 |
|
|
166 |
public static String ShowPherogramHandler_NO_PHEROGRAM_MESSAGE; |
|
167 |
|
|
168 |
|
|
169 |
public static String ToggleInsertOverwriteHandler_SWITCH_INSERTION; |
|
170 |
|
|
171 |
|
|
172 |
public static String ToggleInsertOverwriteHandler_SWITCH_OVERWRITE; |
|
173 |
|
|
174 |
|
|
175 |
public static String ToggleLeftRightInsertionHandler_LEFT; |
|
176 |
|
|
177 |
|
|
178 |
public static String ToggleLeftRightInsertionHandler_RIGHT; |
|
179 |
|
|
180 |
|
|
181 |
public static String ToggleLeftRightInsertionHandler_SWITCH_LEFT; |
|
182 |
|
|
183 |
|
|
184 |
public static String ToggleLeftRightInsertionHandler_SWITCH_RIGHT; |
|
185 |
|
|
186 |
|
|
187 |
public static String wizardExportAlignmentAppendExtensionButton; |
|
188 |
public static String wizardExportAlignmentBrowseButton; |
|
189 |
public static String wizardExportAlignmentDataLabel; |
|
190 |
public static String wizardExportAlignmentDescription; |
|
191 |
public static String wizardExportAlignmentDestinationLabel; |
|
192 |
public static String wizardExportAlignmentErrorMissingFileName; |
|
193 |
public static String wizardExportAlignmentErrorMissingSeqLabel; |
|
194 |
public static String wizardExportAlignmentErrorNothingToExport; |
|
195 |
public static String wizardExportAlignmentExportConsensusSeqLabel; |
|
196 |
public static String wizardExportAlignmentExportFormatLabel; |
|
197 |
public static String wizardExportAlignmentExportSingleReads; |
|
198 |
public static String wizardExportAlignmentFileDialogTitle; |
|
199 |
public static String wizardExportAlignmentFileLabel; |
|
200 |
public static String wizardExportAlignmentOptionsDescription; |
|
201 |
public static String wizardExportAlignmentOptionsTitle; |
|
202 |
public static String wizardExportAlignmentTitle; |
|
203 |
public static String wizardExportAlignmentWarningFileNameStartsDot; |
|
204 |
public static String wizardExportAlignmentwarningMissingExtension; |
|
205 |
public static String wizardExportAlignmentWarningFileExists; |
|
206 |
public static String wizardExportAlignmentExportedSeqHeading; |
|
207 |
public static String wizardExportAlignmentAdditionalOptionsHeading; |
|
208 |
public static String wizardExportAlignmentElongateSeqHeading; |
|
209 |
public static String wizardExportAlignmentElongateSeqMissingData; |
|
210 |
public static String wizardExportAlignmentElongateSeqGap; |
|
211 |
|
|
212 |
|
|
213 |
static { |
|
214 |
// initialize resource bundle |
|
215 |
NLS.initializeMessages(BUNDLE_NAME, Messages.class); |
|
216 |
} |
|
217 |
|
|
218 |
private Messages() {} |
|
219 |
} |
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/l10n/messages.properties | ||
---|---|---|
1 |
exportSequenceToFileHandlerIOErrorMessage=An error occurred when trying to export a consensus sequence alignment to the file "%s". |
|
2 |
exportSequenceToFileHandlerIOErrorTitle=I/O error |
|
3 |
exportSequenceToFileHandlerOverwriteTitle=Overwrite file |
|
4 |
exportSequenceToFileHandlerOverwriteText=The file \"%s\" already exists.\n\nDo you want to overwrite it? |
|
5 |
wizardExportAlignmentAppendExtensionButton=Append default extension |
|
6 |
wizardExportAlignmentBrowseButton=Browse... |
|
7 |
wizardExportAlignmentDataLabel=Select the data to export: |
|
8 |
wizardExportAlignmentDescription=Define the output file and format. |
|
9 |
wizardExportAlignmentDestinationLabel=Select the export destination: |
|
10 |
wizardExportAlignmentErrorMissingFileName=The file name must not be empty. |
|
11 |
wizardExportAlignmentErrorMissingSeqLabel=The consensus sequence label must not be empty. |
|
12 |
wizardExportAlignmentErrorNothingToExport=Either single reads or the consensus sequence have to be selected for export. |
|
13 |
wizardExportAlignmentExportConsensusSeqLabel=Export consensus sequence |
|
14 |
wizardExportAlignmentExportFormatLabel=Select the export format: |
|
15 |
wizardExportAlignmentExportSingleReads=Export single reads |
|
16 |
wizardExportAlignmentFileDialogTitle=Export to |
|
17 |
wizardExportAlignmentFileLabel=Alignment file: |
|
18 |
wizardExportAlignmentTitle=Sequence export |
|
19 |
wizardExportAlignmentWarningFileNameStartsDot=File starting with '.' are not supported on all operating systems. |
|
20 |
wizardExportAlignmentwarningMissingExtension=The file name does have a valid extension for the selected format. |
|
21 |
wizardExportAlignmentWarningFileExists=The file already exists and will be overwritten. |
|
22 |
wizardExportAlignmentOptionsDescription=Specify additional export parameters. |
|
23 |
wizardExportAlignmentOptionsTitle=Export options |
|
24 |
wizardExportAlignmentExportedSeqHeading=Specify the sequences to be exported: |
|
25 |
wizardExportAlignmentAdditionalOptionsHeading=Specify additional export options: |
|
26 |
wizardExportAlignmentElongateSeqHeading=Elongate sequences to have equal length with: |
|
27 |
wizardExportAlignmentElongateSeqMissingData=Missing data ('?')" |
|
28 |
wizardExportAlignmentElongateSeqGap=Gap ('-') |
|
29 |
|
|
30 |
AlignmentEditor_CUTTING_FAILURE=Cutting pherograms is only possible if exactly one row is selected. |
|
31 |
AlignmentEditor_EDIT_MODE=Edit mode: |
|
32 |
AlignmentEditor_ERROR_SINGLE_READ=Error |
|
33 |
AlignmentEditor_ERROR_SINGLE_READ_MESSAGE=A single read was skipped because of the following error:\n\n |
|
34 |
AlignmentEditor_INSERT=Insert |
|
35 |
AlignmentEditor_INSERTION_PHEROGRAM=Insertion in pherogram: |
|
36 |
AlignmentEditor_LEFT=Left |
|
37 |
AlignmentEditor_LEFT_END_OUTSIDE=The left end of the selection lies outside the pherogram attached to this sequence. |
|
38 |
AlignmentEditor_MUST_HAVE_TYPE=The editor input must have the type %s |
|
39 |
AlignmentEditor_NEW_READ_FAILURE=Creating new reads from AlignmentEditor not implemented. |
|
40 |
AlignmentEditor_NO_ATTACHED_PHEROGRAM=There is no pherogram attached to the current sequence. |
|
41 |
AlignmentEditor_OVERWRITE=Overwrite |
|
42 |
AlignmentEditor_RIGHT=Right |
|
43 |
AlignmentEditor_RIGHT_END_OUTSIDE=The right end of the selection lies outside the pherogram attached to this sequence. |
|
44 |
AlignmentEditor_SAVING_ALIGNMENT=Saving alignment |
|
45 |
AlignmentEditorInput_EDITOR_NAME=AlignmentEditor |
|
46 |
PherogramMouseListener_UNABLE_TO_CREATE_VIEW=Unable to create pherogram view |
|
47 |
|
|
48 |
CutPherogramLeftHandler_CUT_FAILURE=Unable to cut base call sequence |
|
49 |
CutPherogramRightHandler_CUT_FAILURE=Unable to cut base call sequence |
|
50 |
EditSequenceHandler_COULD_NOT_OPEN=Could not open AlignmentEditor |
|
51 |
HandlerTools_COULD_NOT_LOAD_ICON=Icon "%s" could not be loaded. |
|
52 |
LoadPherogramHandler_AB1=AB1 pherogram files |
|
53 |
LoadPherogramHandler_ALL=All files |
|
54 |
LoadPherogramHandler_ALL_FORMATS=All supported formats |
|
55 |
LoadPherogramHandler_IMPORT_PHEROGRAM=Import pherogram into contig alignment |
|
56 |
LoadPherogramHandler_SCF=SCF pherogram files |
|
57 |
LoadPherogramHandler_UNSUPPORTED_FORMAT=Unsupported format |
|
58 |
LoadPherogramHandler_UNSUPPORTED_FORMAT_FILE=Unsupported format |
|
59 |
LoadPherogramHandler_UNSUPPORTED_FORMAT_FILE_MESSAGE=An IO error occurred while trying to read the file |
|
60 |
LoadPherogramHandler_UNSUPPORTED_FORMAT_MESSAGE=The format of the pherogram file "%s" is not supported. (Only AB1 and SCF are supported.) |
|
61 |
ShowPherogramHandler_ERROR=Error |
|
62 |
ShowPherogramHandler_NO_PHEROGRAM=No pherogram available |
|
63 |
ShowPherogramHandler_NO_PHEROGRAM_MESSAGE=The selected read does not have an associated pherogram. |
|
64 |
ToggleInsertOverwriteHandler_SWITCH_INSERTION=Click to switch to insertion mode |
|
65 |
ToggleInsertOverwriteHandler_SWITCH_OVERWRITE=Click to switch to overwrite mode |
|
66 |
ToggleLeftRightInsertionHandler_LEFT=Left |
|
67 |
ToggleLeftRightInsertionHandler_RIGHT=Right |
|
68 |
ToggleLeftRightInsertionHandler_SWITCH_LEFT=Switch to insert pherogram distorsions left of future edits. |
|
69 |
ToggleLeftRightInsertionHandler_SWITCH_RIGHT=Switch to insert pherogram distorsions right of future edits. |
|
70 |
|
|
71 |
AlignmentEditorPasteHandler_CANCEL=Cancel |
|
72 |
AlignmentEditorPasteHandler_PASTE_FAILURE=Unable to paste multiple lines |
|
73 |
AlignmentEditorPasteHandler_PASTE_FAILURE_MESSAGE=The current cursor height (%1$d) does not match the number of lines to be pasted (%2$d).%3$s%3$sYou can either change the cursor height accordingly or set the cursor height to one allowing you to paste all lines from the clipboard into one sequence. |
|
74 |
AlignmentEditorPasteHandler_PASTING_LINES=Pasting multiple lines |
|
75 |
AlignmentEditorPasteHandler_PASTING_LINES_FIRST_LINE=Only paste the first line from the clipboard |
|
76 |
AlignmentEditorPasteHandler_PASTING_LINES_IGNORE=Ignore line breaks and paste as one sequence |
|
77 |
AlignmentEditorPasteHandler_PASTING_LINES_QUESTION=The text to be pasted contains mutlitple lines (%d) although the current cursor height is 1. What do you want to do? |
|
78 |
|
|
79 |
CDMPherogramAlignmentObjectTranslator_NOT_IMPLEMENTED=Not implemented. |
|
80 |
CDMSequenceMatrixAdapter_EITHER_MUST_BE_TRUE=Either exportConsensus or exportSingleReads must be true. Otherwise no sequences would be contained in this matrix. |
|
81 |
CDMSequenceMatrixAdapter_NO_SEQUENCE_FOUND=No sequence with the ID "%d" could be found. |
|
82 |
SequenceIDIterator_NO_MORE_SEQUENCES=There are no more sequence IDs availble from this iterator. |
|
83 |
SequenceIDIterator_REMOVE_NOT_SUPPORTED=This iterator does not support removing elements. |
|
84 |
|
|
85 |
ExportSingleReadAlignmentWizard_EXPORT_SINGLE_READ=Export single read alignment |
eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/l10n/messages_de.properties | ||
---|---|---|
1 |
exportSequenceToFileHandlerIOErrorMessage=Beim Schreiben der Datei "%s" ist ein Fehler aufgetreten. |
|
2 |
exportSequenceToFileHandlerIOErrorTitle=E/A Fehler |
|
3 |
exportSequenceToFileHandlerOverwriteTitle=Datei ?berschreiben |
|
4 |
exportSequenceToFileHandlerOverwriteText=Die Datei \"%s\" existiert bereits.\n\nSoll sie ?berschrieben werden? |
|
5 |
wizardExportAlignmentAppendExtensionButton=Standarddateiendung anh?ngen |
|
6 |
wizardExportAlignmentBrowseButton=Durchsuchen... |
|
7 |
wizardExportAlignmentDataLabel=Zu exportierende Daten: |
|
8 |
wizardExportAlignmentDescription=W?hlen Sie den Zielort und das Zielformat aus! |
|
9 |
wizardExportAlignmentDestinationLabel=Zieldatei: |
|
10 |
wizardExportAlignmentErrorMissingFileName=Der Dateiname darf nicht leer sein. |
|
11 |
wizardExportAlignmentErrorMissingSeqLabel=Der Name der Konsensussequenz darf nicht leer sein. |
|
12 |
wizardExportAlignmentErrorNothingToExport=Es m?ssen entweder die einzelnen Reads oder die Konsensussequenz zum Export ausgew?hlt werden. |
|
13 |
wizardExportAlignmentExportConsensusSeqLabel=Konsensussequenz exportieren |
|
14 |
wizardExportAlignmentExportFormatLabel=Zielformat: |
|
15 |
wizardExportAlignmentExportSingleReads=Einzelne Reads exportieren |
|
16 |
wizardExportAlignmentFileDialogTitle=Exportieren nach |
|
17 |
wizardExportAlignmentFileLabel=Alignment Datei: |
|
18 |
wizardExportAlignmentTitle=Sequenzexport |
|
19 |
wizardExportAlignmentWarningFileNameStartsDot=Dateinamen, die mit einem '.' beginnen, werden nicht auf allen Betriebssystemen unterst?tzt. |
|
20 |
wizardExportAlignmentwarningMissingExtension=Der momentane Dateiname hat keine zum aktuellen Format passende Endung. |
|
21 |
wizardExportAlignmentWarningFileExists=The existiert bereits und w?rde ?berschrieben. |
|
22 |
wizardExportAlignmentOptionsDescription=Geben Sie weitere Exportparameter an! |
|
23 |
wizardExportAlignmentOptionsTitle=Exportoptionen |
|
24 |
wizardExportAlignmentExportedSeqHeading=Zu exportierende Sequenzen: |
|
25 |
wizardExportAlignmentAdditionalOptionsHeading=Erweiterte Exportoptionen: |
|
26 |
wizardExportAlignmentElongateSeqHeading=Sequenzen auf einheitliche L?nge bringen mit: |
|
27 |
wizardExportAlignmentElongateSeqMissingData=Fehlende Daten ('?')" |
|
28 |
wizardExportAlignmentElongateSeqGap=L?cke ('-') |
|
29 |
|
|
30 |
AlignmentEditor_CUTTING_FAILURE=Beschneiden des Pherogramms ist nur m?glich, wenn exakt eine Reihe ausgew?hlt ist. |
|
31 |
AlignmentEditor_EDIT_MODE=Editier-Modus: |
|
32 |
AlignmentEditor_ERROR_SINGLE_READ=Error |
|
33 |
AlignmentEditor_ERROR_SINGLE_READ_MESSAGE=Ein Single-Read wurde ?bersprungen wegen folgendem Fehler:\n\n |
|
34 |
AlignmentEditor_INSERT=Einf?gen |
|
35 |
AlignmentEditor_INSERTION_PHEROGRAM=Einf?gen in Pherogrammm: |
|
36 |
AlignmentEditor_LEFT=Links |
|
37 |
AlignmentEditor_LEFT_END_OUTSIDE=Das linke Ende der Auswahl liegt au?erhalb des Pherogramms dieser Sequenz. |
|
38 |
AlignmentEditor_MUST_HAVE_TYPE=Der Editor-Input muss vom Typ %s sein |
|
39 |
AlignmentEditor_NEW_READ_FAILURE=Das Erzeugen neuer Reads im Alignment-Editor ist nicht implementiert. |
|
40 |
AlignmentEditor_NO_ATTACHED_PHEROGRAM=Die ausgew?hlte Sequenz hat kein angehangenes Pherogramm. |
|
41 |
AlignmentEditor_OVERWRITE=?berschreiben |
|
42 |
AlignmentEditor_RIGHT=REchts |
|
43 |
AlignmentEditor_RIGHT_END_OUTSIDE=Das rechte Ende der Auswahl liegt au?erhalb des Pherogramms dieser Sequenz. |
|
44 |
AlignmentEditor_SAVING_ALIGNMENT=Alignment speichern |
|
45 |
AlignmentEditorInput_EDITOR_NAME=Alignment-Editor |
|
46 |
PherogramMouseListener_UNABLE_TO_CREATE_VIEW=Pherogram-View konnte nicht erstellt werden |
|
47 |
|
|
48 |
CutPherogramLeftHandler_CUT_FAILURE=Base-Call-Sequenz konnte nicht beschnitten werden |
|
49 |
CutPherogramRightHandler_CUT_FAILURE=Base-Call-Sequenz konnte nicht beschnitten werden |
|
50 |
EditSequenceHandler_COULD_NOT_OPEN=Alignment-Editor konnte nicht ge?ffnet werden |
|
51 |
HandlerTools_COULD_NOT_LOAD_ICON=Icon "%s" konnte nicht geladen werden. |
|
52 |
LoadPherogramHandler_AB1=AB1 Pherogramm-Dateien |
|
53 |
LoadPherogramHandler_ALL=Alle Dateien |
|
54 |
LoadPherogramHandler_ALL_FORMATS=Alle unterst?tzten Formate |
|
55 |
LoadPherogramHandler_IMPORT_PHEROGRAM=Pherogramm in Contig-Alignment importieren |
|
56 |
LoadPherogramHandler_SCF=SCF Pherogramm-Dateien |
|
57 |
LoadPherogramHandler_UNSUPPORTED_FORMAT=Nicht unterst?tztes Format |
|
58 |
LoadPherogramHandler_UNSUPPORTED_FORMAT_FILE=Nicht unterst?tztes Format |
|
59 |
LoadPherogramHandler_UNSUPPORTED_FORMAT_FILE_MESSAGE=IO-Fehler beim Lesen der Datei |
|
60 |
LoadPherogramHandler_UNSUPPORTED_FORMAT_MESSAGE=Das Format der Pherogramm-Datei "%s" wird nicht unterst?tzt. (Nur AB1 und SCF werden unterst?tzt.) |
|
61 |
ShowPherogramHandler_ERROR=Error |
|
62 |
ShowPherogramHandler_NO_PHEROGRAM=Kein Pherogramm verf?gbar |
|
63 |
ShowPherogramHandler_NO_PHEROGRAM_MESSAGE=Der ausgew?hlte Read hat kein Pherogramm |
|
64 |
ToggleInsertOverwriteHandler_SWITCH_INSERTION=Klicken, um zum Einf?gen-Modus zu wechseln |
|
65 |
ToggleInsertOverwriteHandler_SWITCH_OVERWRITE=Klicken, um zum ?berschreiben-Modus zu wechseln |
|
66 |
ToggleLeftRightInsertionHandler_LEFT=Links |
|
67 |
ToggleLeftRightInsertionHandler_RIGHT=Rechts |
|
68 |
ToggleLeftRightInsertionHandler_SWITCH_LEFT=Wechseln, um Pherogramm-Verzerrungen linksseitig einzuf?gen. |
|
69 |
ToggleLeftRightInsertionHandler_SWITCH_RIGHT=Wechseln, um Pherogramm-Verzerrungen rechtsseitig einzuf?gen. |
|
70 |
|
|
71 |
AlignmentEditorPasteHandler_CANCEL=Abbrechen |
|
72 |
AlignmentEditorPasteHandler_PASTE_FAILURE=Konnte mehrere Zeilen nicht einf?gen |
|
73 |
AlignmentEditorPasteHandler_PASTE_FAILURE_MESSAGE=Die aktuelle Cursor-Auswahl (%1$d) stimmt nicht mit der Anzahl der einzuf?genden Zeilen (%2$d) ?berein.%3$s%3$sSie k?nnen die Cursor-Auswahl entsprechend anpassen oder die Auswahl auf eine Zeile einschr?nken, um alle Zeilen aus dem Clipboard in die Sequenz einzuf?gen. |
|
74 |
AlignmentEditorPasteHandler_PASTING_LINES=F?ge mehrere Zeilen ein |
|
75 |
AlignmentEditorPasteHandler_PASTING_LINES_FIRST_LINE=F?ge nur die erste Zeile aus dem Clipboard ein |
|
76 |
AlignmentEditorPasteHandler_PASTING_LINES_IGNORE=Zeilenumbr?che ignorieren und als eine Sequenz einf?gen |
|
77 |
AlignmentEditorPasteHandler_PASTING_LINES_QUESTION=Der einzuf?gende Text enth?lt mehrere Zeilen (%d), obwohl die aktuelle Cursor-Auswahl 1 ist. Was wollen Sie tun? |
|
78 |
|
|
79 |
CDMPherogramAlignmentObjectTranslator_NOT_IMPLEMENTED=Nicht implementiert. |
|
80 |
CDMSequenceMatrixAdapter_EITHER_MUST_BE_TRUE=Entweder exportConsensus oder exportSingleReads muss angew?hlt sein. Ansonsten sind keine Sequenzen in der Matrix enthalten. |
|
81 |
CDMSequenceMatrixAdapter_NO_SEQUENCE_FOUND=Sequenz mit der ID "%d" konnte nicht gefunden werden. |
|
82 |
SequenceIDIterator_NO_MORE_SEQUENCES=Dieser Iterator hat keine weiteren Sequenz-IDs. |
|
83 |
SequenceIDIterator_REMOVE_NOT_SUPPORTED=Dieser Iterator unterst?tzt das Entfernen von Elementen nicht. |
|
84 |
|
|
85 |
ExportSingleReadAlignmentWizard_EXPORT_SINGLE_READ=Exportiere Single-Read-Alignment |
Also available in: Unified diff
ref #4611 Restructure string externalization for taxeditor.molecular