EDIT

/**

 *

 */

package eu.etaxonomy.cdm.model.common;

import javax.persistence.Entity;

import javax.persistence.FetchType;

import javax.persistence.ManyToOne;

import javax.xml.bind.annotation.XmlAccessType;

import javax.xml.bind.annotation.XmlAccessorType;

import javax.xml.bind.annotation.XmlElement;

import javax.xml.bind.annotation.XmlIDREF;

import javax.xml.bind.annotation.XmlSchemaType;

import javax.xml.bind.annotation.XmlType;

import org.hibernate.annotations.Cascade;

import org.hibernate.annotations.CascadeType;

import eu.etaxonomy.cdm.model.agent.AgentBase;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.taxon.TaxonBase;

/**

 * This class represents a link to another CDM Base class from within a text.

 * If a text, e.g. a LanguageString links parts of its text to an other CDM Base

 * one may create a tag around the according text including id and uuid as attributes

 * and adding an IntextReference to the LanguageString. The IntextReference then points

 * to the according CdmBase.

 * This way we may keep referential integrity and we may also support correct

 * deduplication or deletion of the referenced objects.

 *

 * @see #4706

 *

 * @author a.mueller

 *

 */

@XmlAccessorType(XmlAccessType.FIELD)

@XmlType(name = "IntextReference", propOrder = {

    "taxonName",

    "taxon",

    "occurrence",

    "agent",

    "reference",

    "annotation",

    "startPos",

    "endPos"

})

@Entity

@Audited

public class IntextReference extends VersionableEntity {

	private static final long serialVersionUID = -7002541566256975424L;

    @XmlElement(name = "TaxonName")

    @XmlIDREF

    @XmlSchemaType(name = "IDREF")

    @ManyToOne(fetch = FetchType.LAZY)

    @XmlElement(name = "Taxon")

    @XmlIDREF

    @XmlSchemaType(name = "IDREF")

    @ManyToOne(fetch = FetchType.LAZY)

	private TaxonBase<?> taxon;

    @XmlElement(name = "Occurrence")

    @XmlIDREF

    @XmlSchemaType(name = "IDREF")

    @ManyToOne(fetch = FetchType.LAZY)

	private SpecimenOrObservationBase<?> occurrence;

    @XmlElement(name = "Agent")

    @XmlIDREF

    @XmlSchemaType(name = "IDREF")

    @ManyToOne(fetch = FetchType.LAZY)

	private AgentBase<?> agent;

    @XmlElement(name = "Reference")

    @XmlIDREF

    @XmlSchemaType(name = "IDREF")

    @ManyToOne(fetch = FetchType.LAZY)

    private Reference reference;

    @XmlIDREF

    @XmlSchemaType(name = "IDREF")

    @ManyToOne(fetch = FetchType.LAZY)

    @Cascade({CascadeType.SAVE_UPDATE,CascadeType.MERGE})

    private OriginalSourceBase<?> source;

    @XmlIDREF

    @XmlSchemaType(name = "IDREF")

    @ManyToOne(fetch = FetchType.LAZY)

	private Media media;

    @XmlIDREF

    @XmlSchemaType(name = "IDREF")

    @ManyToOne(fetch = FetchType.LAZY)

    private PolytomousKey key;

    @XmlElement(name = "LanguageString")

    @XmlIDREF

    @XmlSchemaType(name = "IDREF")

    @ManyToOne(fetch = FetchType.LAZY)

    private LanguageString languageString;

    //TODO or do we want to link to LanguageString Base??

    @XmlElement(name = "Annotation")

    @XmlIDREF

    @XmlSchemaType(name = "IDREF")

    @ManyToOne(fetch = FetchType.LAZY)

    private Annotation annotation;

	private int startPos;

	private int endPos;

        AGENT("agent"),

        MEDIA("media"),

        OCCURRENCE("occurrence"),

        KEY("key")

        String tag;

         private CDM_INTEXT_CLASS(String tag) {

            this.tag = tag;

        }

        public String tag(){

            return this.tag;

        }

    }

            IIntextReferencable referencedEntity, int start, int end){

        IntextReference result = new IntextReference(target, referencedEntity, start, end);

        return result;

    }

	public static LanguageString NewReferencedLanguageString(IIntextReferenceTarget target, String pre, String middle, String post, Language language){

        LanguageString result = LanguageString.NewInstance(null, language);

        IntextReference intextReference = IntextReference.NewInstance(target, result, 0, 0);

	    result.addIntextReference(intextReference);

	    result.setText(pre + intextReference.toInlineString(middle) + post);

        return result;

    }

        if (start < 0 || end < 0 || start > end || end > text.length()){

            throw new IndexOutOfBoundsException("Start and end must be within bounds");

        }

        LanguageString result = LanguageString.NewInstance(text, language);

        IntextReference intextReference = IntextReference.NewInstance(target, result, start, end);

        result.addIntextReference(intextReference);

        String intext = text.substring(0, start) +

                intextReference.toInlineString(text.substring(start, end)) + text.substring(end);

        result.setText(intext);

        return result;

    }

//********************** CONSTRUCTOR ********************************************/

	/**

	 * @deprecated for internal use only

	 */

	@Deprecated //for hibernate use only

	private IntextReference(){}

           super();

           setTarget(target);

           setReferencedEntity(referencedEntity);

           this.startPos = start;

           this.endPos = end;

   }

            return CDM_INTEXT_CLASS.AGENT;

        }else if (media != null){

            return CDM_INTEXT_CLASS.MEDIA;

        }else if (taxonName != null){

            return CDM_INTEXT_CLASS.TAXONNAME;

        }else if (taxon != null){

            return CDM_INTEXT_CLASS.TAXON;

        }else if (reference != null){

            return CDM_INTEXT_CLASS.REFERENCE;

            return CDM_INTEXT_CLASS.SOURCE;

            return CDM_INTEXT_CLASS.OCCURRENCE;

            return CDM_INTEXT_CLASS.KEY;

            throw new IllegalStateException("Intext reference has no target object defined");

        }

    }

   /**

    * Returns the target object. Throws an {@link IllegalStateException} if no target

    * is defined.

    *

    * @return

    */

   public IIntextReferenceTarget getTarget() {

           return agent;

       }else if (media != null){

           return media;

       }else if (taxonName != null){

           return taxonName;

       }else if (taxon != null){

           return taxon;

       }else if (reference != null){

           return reference;

           return source;

           return occurrence;

           return key;

           throw new IllegalStateException("Intext reference has no target object defined");

       }

   }

     * @param target

     */

    private void setTarget(IIntextReferenceTarget target) {

        target = CdmBase.deproxy(target);

            this.taxon = (TaxonBase<?>)target;

        }else if (target instanceof SpecimenOrObservationBase){

            this.occurrence = (SpecimenOrObservationBase<?>)target;

        }else if (target instanceof AgentBase){

            this.agent = (AgentBase<?>)target;

        }else if (target instanceof Reference){

            this.reference = (Reference)target;

            this.source = (OriginalSourceBase<?>)target;

            this.media = (Media)target;

            this.key = (PolytomousKey)target;

            throw new IllegalArgumentException("Target entity not yet handled: " + target.getClass().getName());

        }

    }

       if (languageString != null){

           return languageString;

       }else if (annotation != null){

           return annotation;

       }else{

           return null;

       }

   }

    * @param referencedEntity

    */

   public void setReferencedEntity(IIntextReferencable referencedEntity) {

       if (referencedEntity == null){

           this.annotation = null;

           this.languageString = null;

       }else if (this.getReferencedEntity() == referencedEntity){

           //do nothing

       }else{

           referencedEntity = CdmBase.deproxy(referencedEntity);

           if (referencedEntity instanceof LanguageString){

               this.languageString = (LanguageString)referencedEntity;

               this.annotation = null;

           }else if (referencedEntity instanceof Annotation){

               this.annotation = (Annotation)referencedEntity;

               this.languageString = null;

           }else{

               throw new IllegalArgumentException("Referenced entity type not yet supported: " + referencedEntity.getClass().getName());

           }

           if (!referencedEntity.getIntextReferences().contains(this)){

               referencedEntity.addIntextReference(this);

           }

       }

   }

	public int getStartPos() {

		return startPos;

	}

	public void setStartPos(int startPos) {

		this.startPos = startPos;

	}

	public int getEndPos() {

		return endPos;

	}

	public void setEndPos(int endPos) {

		this.endPos = endPos;

	}

	public String toInlineString(String innerText){

	    String tag = CDM_PREFIX + myClass().tag();

	    String result;

	    if (StringUtils.isNotEmpty(innerText)){

	        result = "<" + tag + attributes + ">" + innerText + "</" + tag + ">";

	    }else{

            result = "<" + tag + attributes + "/>";

	    }

	    return result;

	}

    /**

     * Entity class dependent attributes

     * @param entity

     * @return

     */

    }