EDIT

fixing persistence tests on AgentBase.collectorTitle #4311

add collectorTitle and protectedCollectorTitleCache to Team(orPersonBase) #4311

make identifier annotatable #4673

update cdmlib poms from 3.4.1-SNAPSHOT to 3.5.0-SNAPSHOT

adapt CommonService to allow collection save and add remotewebapp test H2 udpate

merge validation2 and model 3.5 into trunk

merge validation2 and model 3.5 into trunk

remove import

fix search for common names in editor and minor

moveTaxon() with uuids instead of objects as arguments

minor

for infrageneric unranked rank adding unranked
fixing bug with deletion of names and homotypicalGroups

• added methods to handle identifiers

minor

• fixed paging for compressed specimen table

• added pager to associated field units service method

add UpdateResult and make DeleteResult a subclass

minor

DeleteResult : made serializable
remote-security : added remoting url intercept
remoting-services : made user service public
web.xml : added filter chain for securing remoting services

fix #4613

created new service in classificationService

it is a first draft of the createHierarchyService
based on taxonNames and until genus level.

• check related objects for DeterminationEvents

• fixed deletion result relates objects
  • removed @Ignore from tests

• replaced instanceof with isInstanceOf()
  • replaced class cast expressions with deproxy

• temporarily disabled tests to have jenkins compile

• temporarily disabled tests to have jenkins compile

• only add the conflicting related objects to the DeleteResults

PolytomousKey, PolytomousKeyNode : Added merge to cascade annotation
cdmlib-remote-servlet.xml, ConcurrentSessionTest.java : spelling checks
CdmCacher : made cache lement getter methods public
remoting-services.xml, httpInvokerServices : added new services

null handling for find(UUID) and load(UUID) methods

fix findByIdentifier failing test

latest changes for findByIdentifier service

change methodName fix for findByIdentier service

improve and rename findByIdentifier service

remove some javadocs

• refactored getFieldUnits()

add transactional to listByIdentifier service

remove imports

minor

merge cdmlib-service from validation branch to trunk

remove imports

correct logger info

minor

first tests for listByIdentifier

remove imports

first untested version for findByIdentifier #4594

update javadoc and Override in IdentifiableServiceBase

• added comment

• fixed deep delete recursion bug
  • fixed tests

• extracted deepDelete tests to own java class
  • reduced exception logged in DeleteResult

add original label info to specimen facade #4218, #4565

[maven-release-plugin] prepare for next development iteration

[maven-release-plugin] prepare release cdmlib-parent-3.4.0

• fully implemented deep delete (child derivates)
  • added tests

minor

added unit test for derived unit facade with parent but no field unit #4532

• implemented isDeletable() and delete()
  • fixed test XML files and tests

fix Occurrence test

• added isDeleteMolecularData flag to configurator

• use labelCache instead of description for amplification labeling

• change visibility of createTestDataSet to public

• organized imports

minor

minor

updating DnaQuality with typedPurificationMethod to allow both #4434 , #4552

conflict fiexes after merging trunk

merge-update from trunk

-fixed possible NPE (fixes #4532)

merge-update from trunk

update scripts for splitting Amplification and adding labelCache and reversecomplement

• added abstract method createTestData() to CdmIntegrationalTest
  • method should be used for generatin test XML data sets
  • making it abstract and enforcing implementation in sub classes ensures that the same structure is used thus making it easier for the developer to find similar examples....

• fixed testLoadData()
  • the field unit element in the XML needed to have the derivedFrom parameter

• added isPublish() method to facade

preliminary set OccurrenceServie.loadData test to ignore, as data is not loading correctly

preliminary set OccurrenceServie.loadData test to ignore, as data is not loading correctly

latest changes for AmplificationResult

some bugfixes to new Amplification modelling #4541

some adaptations after trunk merge to 3.4.1

merge-update from trunk

separate Amplification and AmplificationResult.java #4541

• added service method to get descriptions which have a specimen set as describedSpecimen
  • added test which fails because the XML is loaded incorrectly

• invoke super method in isDeletable()

• changed service method to retrieve the directly related objects
  • adapted tests

fixing test for SingleReadAlignment and removal of SpecAndObs_Sequence

implement SingleReadAlignment.java #4529
not yet ready

• commented unused field from SpecimenDeleteConfigurator
  • added TODOs for deletion checking for specimens
  • added emtpy isDeletable() method

• commented unused fields of DeleteResult

isDeletable returns DeleteResult

merge-update from trunk

minor

merge PresenceTerm and AbsenceTerm #4521

• added isDeleteFromIndividualsAssociation and isDeleteFromTypeDesignation to SpecimenDeleteConfigurator
  • implemented deletion for above mentioned flags
  • added more information to delete result when deleting specimens
  • added tests for above mentioned flags...

• extended toString() method

• added loadStrategy=CleanSweepInsertLoadStrategy.class to tests to fix test failure

• added DISTINCT to HQL query for associated taxa
  • created and used XML data source in occurrence service test

• added xml resources for tests