EDIT

minor

set termType term updater to literals

schemaupdater for termType

update update script such that no validation errors exist anymore

change some names in molecular and update the update script

merge trunk to cdm-3.3 branch

some changes to the update script

use strings for rankClass (#2615 und #3544)

VocabularyServiceImpl.java, TermVocabularyDaoImpl.java, IVocabularyService.java, ITermVocabularyDao.java : added method (findByTermType) to find all vocabularies related to a particular term type.
TermType.java : Added method (getEmptyDefinedTermBase) to return DefinedTermBase object corresponding to the (this) TermType....

Remove media from SpecimenOrOBseravationBase #3597

add timeperiod to descriptionElementBase #3312

javadoc

update script for genbank accession removal #3552

update script (first part) for new specimen handling in DescriptionBase #3571

update script for new mediaSpecimen attribute #3614

remove descriptive system from description base #2202

minor

compile fix for updater

delete not needed Schema Updater

Rename RightsTerm -> RightsType #1306

add isonym relationship (#2901) and symmetric, transitiv to term updater.

add name relationship type "original spelling for" #2874

implement CDMPreferences #3555

implement CDMPreferences #3555

Make Specimen - SpecimenDescription one-to-many #3571

implement sortIndex for TaxonNode (#3508)

implement sortIndex for TaxonNode and remove usedSynonym from addChildNode methods (#3508)

renaming CategoricalData.states -> stateData (#2923)

resizing titleCache and fullTitleCache (#1592) and renaming CategoricalData.states -> stateData (#2923)

remove ReferencedMediaBase and Figure, let PhylogeneticTree inherit from Media, remove citation and microcitation columns from DB

rename FieldObservation -> FieldUnit #3351

rename FieldObservation -> FieldUnit #3351

adding recordBasis to SpecimenOrObservationBase and removing some DerivedUnit classes (all #3378) and adding kindOfUnit to SpecimenOrObservationBase (except for according termType and vocabulary) #3568.

implementing missing countDescriptionElementForTaxon method and fixing pager

Schema update for startNumber and using startNumber in nodeNumber refresh #3563

implement publish flag for TaxonBase and SpecimenOrObservationBase #1780 (testdata not yet fixed)

enhanced filter capabilities for DescriptionElements & a TermBaseListPropertyEditor

remove homotypical gorup form type designation base and interface #2173

add nom status type "new combination" #3545

added ranks proles, race and sublusus #2793 and updated TermUpdater

Sicilia -> Sicily #2766

Remove GenBankAccession class, Spatium for EN_DASH and some minor stuff for v3.3

URIs->CLOBs

add update step for non unique status

make Sequence.sequence a clob (#3325)

added distanceTo(Ground/WaterSurface)Text -> 1 Test still not running

merge trunk to 3.3

implement RankClass, remove iso639_2, add max values to distance attributes, change type for distances,

exchange modifier classes by DefinedTerm, add termtype to csv files, make term loader required constructor private

fix handling of iso639_2 (add vocabulary check)

remove TdwgArea and add termType and idInVocabulary (#2998, #3478, #3479, #3539) in persistence

update updated script and some other changes

add original source type #1549

update factory methods for original sources #1549

Merge trunk into CDM 3.3

add original source type #1549 and adding taxon node tree index

workaround for the fact that hql is not able to parse boolean literals in the select list clause.

add updater for cdm 3.3

minor

marker.markerType always initialized and serialized

Improvements to TransmissionEngineDistribution, basic monitoring added and new service and dao methods for pageRankSpecificRootNodes()

adding missing @Override

upgrade some spring.hibernate3 dependencies to spring.hibernate4 and deprecate AlternativeSpellingSuggesionParser

fixing generics in CdmPermissionVoter

fix spring security version and some other minor dependency issues

update Xerces to 2.11.0 and fix some other dependencies / and remove commented dependencies

merge trunk to hibernate4

bugfix für list type

CdmAuthority : Changed regex to allow for CRUD operation values to be surrounded by '[]'
Operation : Updated to parse multiple, comma-separated CRUD values

remove model changing validations fix Delete_Orphan #3379

central configuration of admin login and default password in eu.etaxonomy.cdm.config.Configuration

fix all Specimen test including new implementation for hibernate listeners

merge trunk and bugfix linkbackuri jaxb

adding missing @Override and removing absolte casts

using custom hibernate mysql dialects in DataSourceConfigurer

MySQL BOolean support

MySQL5InnoDBUtf8Dialect MySQL BOolean support

explicitely ordering taxa for test ReferenceDaoHibernateImplTest.testListCoveredTaxa()

preliminar solution for handling and setting the lucene version

solving lazy loading exception

Hibernate 4 migration. All test running except for SDDImport (Out of memory)

TaxonNodeServiceImpl : added clearing of relation sets
TaxonDaoHibernateImpl : added 'isOrphaned' field to hql query for building UuidAndTitleCache objects

adding missing default case for switch

update some further dependencies

first implementation of TransmissionEngineOccurrence and basic test

calls to loadRankSpecificRootNodes() in tests and other classes adapted

loadRankSpecificRootNodes() extended, according test enabled and extended

avoiding sql exception

remove exception from UpdataleRoutingDatasource which is not compatibel with parent class in Java 6

fixing #3216 (specimens: type specimens should be displayed with type status)

fixing bug causing StackOverflowExceptions

fixing MediaAutoInitializer & fixing bug in AbstractBeanInitializer

introducting MediaAutoInitializer

implementing full stack from IEventBaseDao to EventBaseController

whitespace

avoiding NPE

autoinitialization of termbase.references and point.exactlocation (indirectly)

fixing #3224 (specimens: Collect Specimens and Observations (+ Facts) via taxon relations.)

fixing bug in getTaxonRelationships() for case directions = null

controller method for listByAssociatedTaxon(); default OrderHints; method harmonization in DAO classes