Merged branches/cdmlib/2.0 changes r5130:5370 into the trunk
licences and INomenclaturalReference for CdDvd
Minor problems discovered whilst refactoring CATE: Corrections to User / Group / Authority impl Changes due to upgrade of hibernate-search change private constructors to protected (due to their handling by hibernate proxies)
Refactored User / Group / Granted Authority + Auditing properties (#630)
bug fix for add/remove TaxonNameDescription in TaxonNameBase
bug fix for Taxon.addDescription()
Committing large number of changes relating to versioning implementation (#108)
NonViralNameParserImplTest bugfix
NomenclaturalCode -> enum
compareTo() implemented for IdentifiableEntity
Tests fixed for autonyms
Major changes to the cdmlib default term loading and initialization, plus indexing of some model entities as part of #476
Resolved #465 - Implemented relationships between terms and added relationships between TDWG Named Areas
BookSection parsing and formatting
parser tests for whitespace and booksection
Attempting to commit something small to the cdm-repository as a test
parser bugfixing2
nomCode valid representation -> "valid" rankless parsing and empty parsing
AuthorCache protected and NameCache protected
Parser enhancement
parser update
test for isMisapliedName
GeoService URL removed from model Distribution class
Distribution Test
TimePeriod -> jodaTime
casting
SpecimenTest
Load predefined terms StatisticalMeasure and DerivationEventType
Assigned continents to ISO 3166 countries using TDWG scheme
Distribution geoService Url updated
update geoServiceUrl creation
colors for PresenceAbsence & DistributionUrl
Fixed makeEmpty()
Changed locality from type String to type LanguageStringBase
change GatheringEvent: addCollectingArea instead of setCollectingArea (Set of NamedArea)
Implemented methods getFullTitleCache() and getDatabaseType() for Taxonomic Editor.
Refactored JAXB package from cdmlib-model to cdmlib-io. Activator added to app-import.
Marshall TextData/MultiLanguageText for one entry in Map
parser test updated
Opportunity to omit term loading during DB initialization. Use @Qualifier to fix bean creation error.
Tested some options to retrieve taxa flat
CLOSED - #360: DIPTERA type information for synonymous genera is missing
Deserialize Cichorieae reference database
Refactored DataSet
Performed project cleanup.
Temporarily use getStrUuid method to annotate field uuid as XML ID until we migrate to JAXB 2.1. Retrieve fields relatedTo, relatedFrom and type for taxon and synonym relationships.
switched to featureTree implementation for displaying descriptions
UUIDUserType
Changed synonyms to Set
Set up roundtrip test: Init DB with sample, Serialize, Deserialize
Serializing from DB to XML tested with sample taxonomic names and references
Store sample data set in DB
Roundtrip marshalling - unmarshalling with sample data set
Improved JAXB annotations for sample DataSet
JAXB marshaling: Added Synonym Relationships
Added constructor parameter "infraGenericEpithet" to BotanicalName/ZoologicalName instantiations
Reorganize DataSetTest/CdmDocumentBuilderTest