fix merge problem
Improve ABCD import report
Revert "getUuidAndTitleCache of classificationservice does not need the excluded taxa"
This reverts commit 1b553592f0055e0fec1ab3878236fa0ecad1bd17.
getUuidAndTitleCache of classificationservice does not need the excluded taxa
Remove generics from Reference in cdmlib (except for cdmlib-model) #5830
Remove bidirectionality for supplemental data #5743
add query to ABCDImportConfigurator
Fix potential NPE
Show complete stacktrace in import report
Fix counting of specimens created in ABCD import report
Parse spatial data for gathering event in ABCD import #5169
Set Unit/Notes and Gathering/Notes in ABCD import #5168
Import missing parameters for ggbn ABCD import
Refactored import return type from boolean to ImportResult
Move import report to import state super class
#5297 Add cancel and waitForFeedback functionality
Correct work units
#5297 Refactor ProgressMonitorController, Add Remoting Progress monitor
#5297 Add progress monitor service, Add test services
#5297 Add monit import method
#5297 Update no. of work units
#5297 Add new thread class for remoting monitors
#5297 Add owner field to monitor thread and user checks in service...
Fix NPE in ABCD import collection matching
Add stack trace to import report
Enhance ABCD import report
Refine rank parsing
Enhance ignored import due to already existing specimens
#5130 Extend cdmlib import architecture to allow for remoting and Add import methods to IOService
Add support for ABCD 2.0.6 in UnitAssociationParser
Log ignored specimens in import report
Add two new test files
Enhance name parsing
Error logging for name parsing
Remove parseNameAutomatically flag
Refactor ABCD import
Fix taxon existance check
Add import report logging to utility methods
Catch exception instead of throwing them
Lets the methods return
Error loggind during import
Add exception during import to report
Fix classification handling for new and exisiting taxa
Exception handling
Handle default classification in state object
Fix classification handling in ABCD import
Log exceptions during import in the report file
Reset prefix after importing associated units
Do not close system.out
Soften association type matching.
Map preparation material to derivation event description
Evaluate unit association type in ABCD import
Check if primer or amplification already exist
Evaluate UnitAssociationType during import
Current rule for the relation between the imported unit and its associated units:
Parse sample designation in ABCD GGBN import
Move up name parsing
Import associated units
Import associated units via BioCase query
Move prefix parsing to utility method and import state
Move unit parsing to utility class
Import associated units in ABCD import
Worked on the order of importing units especially when associated units are present. Adapted test.
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Adapt to method parameter change
First changes
Moved class variables to import state
Rename NonViralName.xxxAuthorTeam to xxxAuthorship #4968
moving UuidAndTitleCache from model to persistence. #4799