|
1
|
/**
|
|
2
|
* Copyright (C) 2017 EDIT
|
|
3
|
* European Distributed Institute of Taxonomy
|
|
4
|
* http://www.e-taxonomy.eu
|
|
5
|
*
|
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
|
8
|
*/
|
|
9
|
package eu.etaxonomy.taxeditor.editor.workingSet.matrix;
|
|
10
|
|
|
11
|
import java.util.Collection;
|
|
12
|
|
|
13
|
import eu.etaxonomy.cdm.api.service.IOccurrenceService;
|
|
14
|
import eu.etaxonomy.cdm.hibernate.HibernateProxyHelper;
|
|
15
|
import eu.etaxonomy.cdm.model.description.SpecimenDescription;
|
|
16
|
import eu.etaxonomy.cdm.model.location.NamedArea;
|
|
17
|
import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
|
|
18
|
import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
|
|
19
|
import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
|
|
20
|
import eu.etaxonomy.cdm.model.taxon.Taxon;
|
|
21
|
import eu.etaxonomy.cdm.model.taxon.TaxonBase;
|
|
22
|
import eu.etaxonomy.taxeditor.model.MessagingUtils;
|
|
23
|
import eu.etaxonomy.taxeditor.store.CdmStore;
|
|
24
|
|
|
25
|
/**
|
|
26
|
* @author pplitzner
|
|
27
|
* @since Dec 14, 2017
|
|
28
|
*
|
|
29
|
*/
|
|
30
|
public class RowWrapper {
|
|
31
|
|
|
32
|
private SpecimenDescription description;
|
|
33
|
|
|
34
|
private Taxon associatedTaxon;
|
|
35
|
private FieldUnit fieldUnit;
|
|
36
|
private String identifier;
|
|
37
|
private NamedArea country;
|
|
38
|
|
|
39
|
public RowWrapper(SpecimenDescription description) {
|
|
40
|
this.description = description;
|
|
41
|
|
|
42
|
IOccurrenceService occurrenceService = CdmStore.getService(IOccurrenceService.class);
|
|
43
|
SpecimenOrObservationBase<?> specimen = HibernateProxyHelper.deproxy(description.getDescribedSpecimenOrObservation(), SpecimenOrObservationBase.class);
|
|
44
|
if(specimen!=null){
|
|
45
|
Collection<TaxonBase<?>> associatedTaxa = occurrenceService.listAssociatedTaxa(specimen, null, null, null, null);
|
|
46
|
if(associatedTaxa!=null){
|
|
47
|
associatedTaxon = (Taxon) associatedTaxa.iterator().next();
|
|
48
|
}
|
|
49
|
Collection<FieldUnit> fieldUnits = occurrenceService.getFieldUnits(specimen.getUuid());
|
|
50
|
if(fieldUnits.size()!=1){
|
|
51
|
MessagingUtils.error(RowWrapper.class, "More than one or no field unit found for specimen", null);
|
|
52
|
}
|
|
53
|
else{
|
|
54
|
fieldUnit = fieldUnits.iterator().next();
|
|
55
|
}
|
|
56
|
if(specimen instanceof DerivedUnit){
|
|
57
|
identifier = occurrenceService.getMostSignificantIdentifier(HibernateProxyHelper.deproxy(specimen, DerivedUnit.class));
|
|
58
|
}
|
|
59
|
if(fieldUnit!=null && fieldUnit.getGatheringEvent()!=null){
|
|
60
|
country = fieldUnit.getGatheringEvent().getCountry();
|
|
61
|
}
|
|
62
|
}
|
|
63
|
}
|
|
64
|
|
|
65
|
public SpecimenDescription getSpecimenDescription() {
|
|
66
|
return description;
|
|
67
|
}
|
|
68
|
|
|
69
|
public Taxon getAssociatedTaxon() {
|
|
70
|
return associatedTaxon;
|
|
71
|
}
|
|
72
|
|
|
73
|
public FieldUnit getFieldUnit() {
|
|
74
|
return fieldUnit;
|
|
75
|
}
|
|
76
|
|
|
77
|
public String getIdentifier() {
|
|
78
|
return identifier;
|
|
79
|
}
|
|
80
|
|
|
81
|
public NamedArea getCountry() {
|
|
82
|
return country;
|
|
83
|
}
|
|
84
|
|
|
85
|
}
|