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/**
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* Copyright (C) 2007 EDIT
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Patric Plitzner
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* European Distributed Institute of Taxonomy
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n.hoffmann
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.taxeditor.editor;
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import java.util.HashSet;
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import java.util.Set;
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import java.util.UUID;
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import org.eclipse.jface.resource.ImageDescriptor;
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import org.eclipse.ui.IEditorInput;
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import org.eclipse.ui.IMemento;
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import org.eclipse.ui.IPersistableElement;
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import eu.etaxonomy.cdm.api.conversation.ConversationHolder;
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import eu.etaxonomy.cdm.api.conversation.IConversationEnabled;
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import eu.etaxonomy.cdm.api.service.IClassificationService;
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import eu.etaxonomy.cdm.api.service.ITaxonNodeService;
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import eu.etaxonomy.cdm.api.service.ITaxonService;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.name.TaxonNameBase;
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import eu.etaxonomy.cdm.model.taxon.ITaxonTreeNode;
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import eu.etaxonomy.cdm.model.taxon.Synonym;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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import eu.etaxonomy.cdm.model.taxon.TaxonNode;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
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import eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap;
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import eu.etaxonomy.taxeditor.model.DataChangeBridge;
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import eu.etaxonomy.taxeditor.model.MessagingUtils;
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import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
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import eu.etaxonomy.taxeditor.store.CdmStore;
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/**
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* <p>TaxonEditorInput class.</p>
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*
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* @author n.hoffmann
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* @created 19.03.2009
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* @version 1.0
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*/
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public class TaxonEditorInput implements IEditorInput, IConversationEnabled, IPersistableElement {
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private ConversationHolder conversation;
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private TaxonNode taxonNode;
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private TaxonEditorInputDataChangeBehaviour dataChangeBehavior;
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private TaxonBase initiallySelectedTaxonBase;
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private TaxonEditorInput(TaxonNode taxonNode, ConversationHolder conversation){
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this.conversation = conversation;
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this.taxonNode = taxonNode;
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}
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/**
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* <p>NewInstance</p>
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*
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* @param taxonNodeUuid a {@link java.util.UUID} object.
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* @return a {@link eu.etaxonomy.taxeditor.editor.TaxonEditorInput} object.
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* @throws java.lang.Exception if any.
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*/
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public static TaxonEditorInput NewInstance(UUID taxonNodeUuid) throws Exception{
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try{
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ConversationHolder conversation = CdmStore.createConversation();
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return NewInstance(taxonNodeUuid, conversation);
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}catch(Exception e){
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throw e;
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}
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}
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/**
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*
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* @param taxonNodeUuid
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* @param conversation
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* @return
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*/
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private static TaxonEditorInput NewInstance(UUID taxonNodeUuid, ConversationHolder conversation){
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TaxonNode taxonNode = CdmStore.getService(ITaxonNodeService.class).load(taxonNodeUuid, null);
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if(taxonNode == null){
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MessagingUtils.warningDialog("Not yet implemented", TaxonEditorInput.class, "Selected element is not type TaxonBase.");
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return null;
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}
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return new TaxonEditorInput(taxonNode, conversation);
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}
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/**
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* <p>NewInstanceFromTaxonBase</p>
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*
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* @param taxonBaseUuid a {@link java.util.UUID} object.
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* @return a {@link eu.etaxonomy.taxeditor.editor.TaxonEditorInput} object.
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*/
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public static TaxonEditorInput NewInstanceFromTaxonBase(UUID taxonBaseUuid){
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ConversationHolder conversation = CdmStore.createConversation();
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TaxonEditorInput input = null;
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TaxonBase taxonBase = CdmStore.getService(ITaxonService.class).find(taxonBaseUuid);
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if (taxonBase != null){
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if(taxonBase.isOrphaned()) {
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MessagingUtils.warningDialog("Orphaned Taxon", TaxonEditorInput.class, "This is an orphaned taxon i.e. a taxon that is not connected to a classification and not having any taxonomic relationships. Editing of orphaned taxon is currently not supported.");
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}
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else if(taxonBase.isInstanceOf(Taxon.class)){
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Taxon taxon = CdmBase.deproxy(taxonBase, Taxon.class);
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if (taxon.getTaxonNodes().size() == 0 && taxon.isMisapplication()){
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// TODO get accepted taxon
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MessagingUtils.info("trying to open Mispplied Name ");
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Set<Taxon> acceptedTaxa = new HashSet<Taxon>();
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Set<TaxonRelationship> relations = taxon.getRelationsFromThisTaxon();
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for(TaxonRelationship relation : relations){
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if(relation.getType().equals(TaxonRelationshipType.MISAPPLIED_NAME_FOR())){
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acceptedTaxa.add(relation.getToTaxon());
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}
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}
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input = getInputForMultipleTaxa(conversation, acceptedTaxa);
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}else{
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input = getInputForMultipleNodes(conversation, taxon.getTaxonNodes());
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}
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}else if(taxonBase instanceof Synonym){
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Synonym synonym = (Synonym) taxonBase;
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Set<Taxon> taxa = synonym.getAcceptedTaxa();
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input = getInputForMultipleTaxa(conversation, taxa);
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}
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if (input != null){
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input.setInitiallySelectedTaxonBase(taxonBase);
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}
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}
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return input;
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}
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private static TaxonEditorInput getInputForMultipleNodes(ConversationHolder conversation, Set<TaxonNode> taxonNodes){
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if(taxonNodes.size() == 1){
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TaxonNode taxonNode = taxonNodes.iterator().next();
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return NewInstance(taxonNode.getUuid(), conversation);
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}else if(taxonNodes.size() > 1){
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TaxonNode taxonNode = ChooseFromMultipleTaxonNodesDialog.choose(taxonNodes);
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if(taxonNode != null){
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return NewInstance(taxonNode.getUuid(), conversation);
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}
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}else if(taxonNodes.size() == 0){
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// this is an undesired state
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MessagingUtils.warningDialog("Incorrect state", TaxonEditorInput.class, "The accepted taxon is not part of any classification. This should not have happened.");
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}
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return null;
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}
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private static TaxonEditorInput getInputForMultipleTaxa(ConversationHolder conversation, Set<Taxon> taxa){
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if(taxa.size() == 1){
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Taxon taxon = taxa.iterator().next();
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Set<TaxonNode> nodes = taxon.getTaxonNodes();
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return getInputForMultipleNodes(conversation, nodes);
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}else if(taxa.size() > 1){
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Set<TaxonNode> taxonNodes = new HashSet<TaxonNode>();
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for ( Taxon taxon : taxa ){
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taxonNodes.addAll(taxon.getTaxonNodes());
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}
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return getInputForMultipleNodes(conversation, taxonNodes);
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}else if(taxa.size() == 0){
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// this is an undesired state
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MessagingUtils.warningDialog("Incorrect state", TaxonEditorInput.class, "Trying to open accepted taxon for a synonym or misapplication but" +
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" no accepted taxa are present. This should not have happened.");
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}
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return null;
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}
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/**
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* <p>NewEmptyInstance</p>
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*
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* @param parentNodeUuid a {@link java.util.UUID} object.
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* @return a {@link eu.etaxonomy.taxeditor.editor.TaxonEditorInput} object.
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*/
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public static TaxonEditorInput NewEmptyInstance(UUID parentNodeUuid){
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ConversationHolder conversation = CdmStore.createConversation();
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TaxonNameBase<?, ?> name = PreferencesUtil.getPreferredNomenclaturalCode().getNewTaxonNameInstance(null);
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ITaxonTreeNode parentNode = CdmStore.getService(IClassificationService.class).getTreeNodeByUuid(parentNodeUuid);
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Taxon newTaxon = Taxon.NewInstance(name, parentNode.getReference());
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TaxonNode newTaxonNode = parentNode.addChildTaxon(newTaxon, parentNode.getReference(), parentNode.getMicroReference());
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// add the new taxon to the editors persistence context
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UUID newTaxonNodeUuid = CdmStore.getService(ITaxonNodeService.class).save(newTaxonNode);
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return new TaxonEditorInput(newTaxonNode, conversation);
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}
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/* (non-Javadoc)
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* @see org.eclipse.ui.IEditorInput#exists()
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*/
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/**
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* <p>exists</p>
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*
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* @return a boolean.
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*/
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@Override
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public boolean exists() {
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return taxonNode != null;
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}
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/* (non-Javadoc)
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* @see org.eclipse.ui.IEditorInput#getImageDescriptor()
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*/
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/**
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* <p>getImageDescriptor</p>
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*
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* @return a {@link org.eclipse.jface.resource.ImageDescriptor} object.
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*/
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@Override
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public ImageDescriptor getImageDescriptor() {
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return null;
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}
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/* (non-Javadoc)
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* @see org.eclipse.ui.IEditorInput#getName()
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*/
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/**
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* <p>getName</p>
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*
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* @return a {@link java.lang.String} object.
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*/
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@Override
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public String getName() {
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if(getTaxon() == null){
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return null;
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}
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TaxonNameBase<?, ?> name = getTaxon().getName();
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if (name == null || name.getTitleCache() == null) {
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return "New taxon";
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} else {
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return name.getTitleCache();
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}
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}
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/* (non-Javadoc)
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* @see org.eclipse.ui.IEditorInput#getPersistable()
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*/
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/**
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* <p>getPersistable</p>
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*
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* @return a {@link org.eclipse.ui.IPersistableElement} object.
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*/
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@Override
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public IPersistableElement getPersistable() {
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// if(CdmStore.isActive()){
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// TaxonNode test = CdmStore.getTaxonTreeService().getTaxonNodeByUuid(taxonNode.getUuid());
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// boolean isPersistable = CdmStore.getTaxonTreeService().getTaxonNodeByUuid(taxonNode.getUuid()) != null;
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// if (isPersistable) {
|
| 268 |
|
|
// return this;
|
| 269 |
|
|
// }
|
| 270 |
|
|
// }
|
| 271 |
|
|
return null;
|
| 272 |
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|
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|
}
|
| 273 |
|
|
|
| 274 |
|
|
/* (non-Javadoc)
|
| 275 |
|
|
* @see org.eclipse.ui.IEditorInput#getToolTipText()
|
| 276 |
|
|
*/
|
| 277 |
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|
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|
/**
|
| 278 |
|
|
* <p>getToolTipText</p>
|
| 279 |
|
|
*
|
| 280 |
|
|
* @return a {@link java.lang.String} object.
|
| 281 |
|
|
*/
|
| 282 |
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|
Patric Plitzner
|
@Override
|
| 283 |
|
|
public String getToolTipText() {
|
| 284 |
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|
n.hoffmann
|
return getName();
|
| 285 |
|
|
}
|
| 286 |
|
|
|
| 287 |
|
|
/* (non-Javadoc)
|
| 288 |
|
|
* @see org.eclipse.core.runtime.IAdaptable#getAdapter(java.lang.Class)
|
| 289 |
|
|
*/
|
| 290 |
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|
n.hoffmann
|
/** {@inheritDoc} */
|
| 291 |
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|
Patric Plitzner
|
@Override
|
| 292 |
|
|
public Object getAdapter(Class adapter) {
|
| 293 |
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|
n.hoffmann
|
|
| 294 |
|
|
if (adapter == Taxon.class) {
|
| 295 |
5dd980ce
|
n.hoffmann
|
return taxonNode.getTaxon();
|
| 296 |
|
|
}
|
| 297 |
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|
Patric Plitzner
|
|
| 298 |
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|
n.hoffmann
|
if (adapter == TaxonNode.class) {
|
| 299 |
|
|
return taxonNode;
|
| 300 |
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|
n.hoffmann
|
}
|
| 301 |
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|
Patric Plitzner
|
|
| 302 |
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|
n.hoffmann
|
return null;
|
| 303 |
|
|
}
|
| 304 |
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|
Patric Plitzner
|
|
| 305 |
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|
n.hoffmann
|
/**
|
| 306 |
|
|
* {@inheritDoc}
|
| 307 |
|
|
*
|
| 308 |
|
|
* Overrides equals to ensure that a taxon can only be edited by
|
| 309 |
|
|
* one editor at a time.
|
| 310 |
|
|
*/
|
| 311 |
f6a8dc56
|
Patric Plitzner
|
@Override
|
| 312 |
|
|
public boolean equals(Object obj) {
|
| 313 |
|
|
if (TaxonEditorInput.class.equals(obj.getClass())
|
| 314 |
b455bf12
|
n.hoffmann
|
&& getTaxon() != null
|
| 315 |
1d9ed6ce
|
n.hoffmann
|
&& getTaxon().equals(((TaxonEditorInput) obj).getTaxon())){
|
| 316 |
|
|
if(((TaxonEditorInput) obj).getInitiallySelectedTaxonBase() != null){
|
| 317 |
|
|
setInitiallySelectedTaxonBase(((TaxonEditorInput) obj).getInitiallySelectedTaxonBase());
|
| 318 |
|
|
}
|
| 319 |
8091dec0
|
n.hoffmann
|
return true;
|
| 320 |
1d9ed6ce
|
n.hoffmann
|
}
|
| 321 |
8091dec0
|
n.hoffmann
|
return false;
|
| 322 |
|
|
}
|
| 323 |
|
|
|
| 324 |
5dd980ce
|
n.hoffmann
|
/**
|
| 325 |
3be6ef3e
|
n.hoffmann
|
* <p>getTaxon</p>
|
| 326 |
|
|
*
|
| 327 |
5dd980ce
|
n.hoffmann
|
* @return the taxon
|
| 328 |
|
|
*/
|
| 329 |
8091dec0
|
n.hoffmann
|
public Taxon getTaxon(){
|
| 330 |
5dd980ce
|
n.hoffmann
|
return taxonNode.getTaxon();
|
| 331 |
|
|
}
|
| 332 |
f6a8dc56
|
Patric Plitzner
|
|
| 333 |
5dd980ce
|
n.hoffmann
|
/**
|
| 334 |
3be6ef3e
|
n.hoffmann
|
* <p>Getter for the field <code>taxonNode</code>.</p>
|
| 335 |
|
|
*
|
| 336 |
5dd980ce
|
n.hoffmann
|
* @return the taxonNode
|
| 337 |
|
|
*/
|
| 338 |
|
|
public TaxonNode getTaxonNode() {
|
| 339 |
|
|
return taxonNode;
|
| 340 |
8091dec0
|
n.hoffmann
|
}
|
| 341 |
f6a8dc56
|
Patric Plitzner
|
|
| 342 |
8091dec0
|
n.hoffmann
|
/*
|
| 343 |
|
|
* (non-Javadoc)
|
| 344 |
|
|
* @see eu.etaxonomy.cdm.api.conversation.IConversationEnabled#getConversationHolder()
|
| 345 |
|
|
*/
|
| 346 |
3be6ef3e
|
n.hoffmann
|
/**
|
| 347 |
|
|
* <p>getConversationHolder</p>
|
| 348 |
|
|
*
|
| 349 |
|
|
* @return a {@link eu.etaxonomy.cdm.api.conversation.ConversationHolder} object.
|
| 350 |
|
|
*/
|
| 351 |
f6a8dc56
|
Patric Plitzner
|
@Override
|
| 352 |
|
|
public ConversationHolder getConversationHolder() {
|
| 353 |
8091dec0
|
n.hoffmann
|
return conversation;
|
| 354 |
|
|
}
|
| 355 |
|
|
|
| 356 |
|
|
/*
|
| 357 |
|
|
* (non-Javadoc)
|
| 358 |
|
|
* @see eu.etaxonomy.cdm.persistence.hibernate.ICdmPostCrudObserver#update(eu.etaxonomy.cdm.persistence.hibernate.CdmCrudEvent)
|
| 359 |
|
|
*/
|
| 360 |
3be6ef3e
|
n.hoffmann
|
/** {@inheritDoc} */
|
| 361 |
f6a8dc56
|
Patric Plitzner
|
@Override
|
| 362 |
|
|
public void update(CdmDataChangeMap events) {
|
| 363 |
b455bf12
|
n.hoffmann
|
if(dataChangeBehavior == null){
|
| 364 |
|
|
dataChangeBehavior = new TaxonEditorInputDataChangeBehaviour(this);
|
| 365 |
|
|
}
|
| 366 |
f6a8dc56
|
Patric Plitzner
|
|
| 367 |
b455bf12
|
n.hoffmann
|
DataChangeBridge.handleDataChange(events, dataChangeBehavior);
|
| 368 |
8091dec0
|
n.hoffmann
|
}
|
| 369 |
|
|
|
| 370 |
|
|
/* (non-Javadoc)
|
| 371 |
|
|
* @see org.eclipse.ui.IPersistableElement#getFactoryId()
|
| 372 |
|
|
*/
|
| 373 |
3be6ef3e
|
n.hoffmann
|
/**
|
| 374 |
|
|
* <p>getFactoryId</p>
|
| 375 |
|
|
*
|
| 376 |
|
|
* @return a {@link java.lang.String} object.
|
| 377 |
|
|
*/
|
| 378 |
f6a8dc56
|
Patric Plitzner
|
@Override
|
| 379 |
|
|
public String getFactoryId() {
|
| 380 |
8091dec0
|
n.hoffmann
|
return TaxonEditorInputFactory.getFactoryId();
|
| 381 |
|
|
}
|
| 382 |
|
|
|
| 383 |
|
|
/* (non-Javadoc)
|
| 384 |
|
|
* @see org.eclipse.ui.IPersistable#saveState(org.eclipse.ui.IMemento)
|
| 385 |
|
|
*/
|
| 386 |
3be6ef3e
|
n.hoffmann
|
/** {@inheritDoc} */
|
| 387 |
f6a8dc56
|
Patric Plitzner
|
@Override
|
| 388 |
|
|
public void saveState(IMemento memento) {
|
| 389 |
8091dec0
|
n.hoffmann
|
TaxonEditorInputFactory.saveState(memento, this);
|
| 390 |
|
|
}
|
| 391 |
3fb05254
|
n.hoffmann
|
|
| 392 |
f6a8dc56
|
Patric Plitzner
|
|
| 393 |
3be6ef3e
|
n.hoffmann
|
/**
|
| 394 |
|
|
* <p>Setter for the field <code>initiallySelectedTaxonBase</code>.</p>
|
| 395 |
|
|
*
|
| 396 |
|
|
* @param taxonBase a {@link eu.etaxonomy.cdm.model.taxon.TaxonBase} object.
|
| 397 |
|
|
*/
|
| 398 |
1d9ed6ce
|
n.hoffmann
|
public void setInitiallySelectedTaxonBase(TaxonBase taxonBase) {
|
| 399 |
3fb05254
|
n.hoffmann
|
this.initiallySelectedTaxonBase = taxonBase;
|
| 400 |
|
|
}
|
| 401 |
|
|
|
| 402 |
3be6ef3e
|
n.hoffmann
|
/**
|
| 403 |
|
|
* <p>Getter for the field <code>initiallySelectedTaxonBase</code>.</p>
|
| 404 |
|
|
*
|
| 405 |
|
|
* @return a {@link eu.etaxonomy.cdm.model.taxon.TaxonBase} object.
|
| 406 |
|
|
*/
|
| 407 |
3fb05254
|
n.hoffmann
|
public TaxonBase getInitiallySelectedTaxonBase() {
|
| 408 |
|
|
return initiallySelectedTaxonBase;
|
| 409 |
|
|
}
|
| 410 |
f6a8dc56
|
Patric Plitzner
|
|
| 411 |
0af47024
|
n.hoffmann
|
@Override
|
| 412 |
|
|
public String toString() {
|
| 413 |
|
|
return String.format("%s[%s]", this.getClass().getSimpleName(), getTaxon());
|
| 414 |
|
|
}
|
| 415 |
8091dec0
|
n.hoffmann
|
}
|