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544878ef
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Patric Plitzner
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// $Id$
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/**
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* Copyright (C) 2013 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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15387df0
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Patric Plitzner
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package eu.etaxonomy.taxeditor.editor.view.dataimport.transientServices;
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544878ef
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Patric Plitzner
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import java.io.IOException;
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import java.util.Collection;
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214bf9b9
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Patric Plitzner
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import java.util.HashSet;
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544878ef
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Patric Plitzner
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import java.util.UUID;
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import org.apache.lucene.index.CorruptIndexException;
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import org.apache.lucene.queryParser.ParseException;
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7759e4de
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Andreas Müller
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import org.hibernate.LockOptions;
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544878ef
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Patric Plitzner
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import org.hibernate.Session;
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import org.hibernate.criterion.Criterion;
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import org.hibernate.envers.query.criteria.AuditCriterion;
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import org.hibernate.search.spatial.impl.Rectangle;
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import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
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import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException;
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bcdc7df3
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Katja Luther
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import eu.etaxonomy.cdm.api.service.DeleteResult;
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544878ef
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Patric Plitzner
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import eu.etaxonomy.cdm.api.service.IOccurrenceService;
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3f8e87ed
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Katja Luther
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import eu.etaxonomy.cdm.api.service.config.DeleteConfiguratorBase;
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544878ef
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Patric Plitzner
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import eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator;
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d0ba58fc
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Patric Plitzner
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import eu.etaxonomy.cdm.api.service.config.SpecimenDeleteConfigurator;
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44b88189
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Patric Plitzner
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import eu.etaxonomy.cdm.api.service.dto.FieldUnitDTO;
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62ad723f
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Andreas Müller
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import eu.etaxonomy.cdm.api.service.dto.FindByIdentifierDTO;
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44b88189
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Patric Plitzner
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import eu.etaxonomy.cdm.api.service.dto.PreservedSpecimenDTO;
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544878ef
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import eu.etaxonomy.cdm.api.service.pager.Pager;
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import eu.etaxonomy.cdm.api.service.search.SearchResult;
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import eu.etaxonomy.cdm.api.service.util.TaxonRelationshipEdge;
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import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;
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import eu.etaxonomy.cdm.model.common.Annotation;
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d3cd098b
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Patric Plitzner
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import eu.etaxonomy.cdm.model.common.CdmBase;
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7c1862cd
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Andreas Müller
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import eu.etaxonomy.cdm.model.common.DefinedTerm;
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00a62062
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Patric Plitzner
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import eu.etaxonomy.cdm.model.common.ICdmBase;
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Patric Plitzner
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import eu.etaxonomy.cdm.model.common.ISourceable;
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import eu.etaxonomy.cdm.model.common.IdentifiableSource;
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import eu.etaxonomy.cdm.model.common.LSID;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.Marker;
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import eu.etaxonomy.cdm.model.common.MarkerType;
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import eu.etaxonomy.cdm.model.common.UuidAndTitleCache;
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import eu.etaxonomy.cdm.model.description.DescriptionBase;
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44b88189
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Patric Plitzner
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import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
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abc0d35a
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import eu.etaxonomy.cdm.model.description.IndividualsAssociation;
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544878ef
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Patric Plitzner
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import eu.etaxonomy.cdm.model.location.Country;
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import eu.etaxonomy.cdm.model.media.Media;
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import eu.etaxonomy.cdm.model.media.Rights;
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5303e44d
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Patric Plitzner
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import eu.etaxonomy.cdm.model.molecular.DnaSample;
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import eu.etaxonomy.cdm.model.molecular.Sequence;
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abc0d35a
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Patric Plitzner
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import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation;
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import eu.etaxonomy.cdm.model.occurrence.DerivationEvent;
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import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
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import eu.etaxonomy.cdm.model.occurrence.DeterminationEvent;
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import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
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import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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import eu.etaxonomy.cdm.model.view.AuditEvent;
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import eu.etaxonomy.cdm.model.view.AuditEventRecord;
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import eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort;
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import eu.etaxonomy.cdm.persistence.query.Grouping;
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import eu.etaxonomy.cdm.persistence.query.MatchMode;
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import eu.etaxonomy.cdm.persistence.query.OrderHint;
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import eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy;
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import eu.etaxonomy.cdm.strategy.match.IMatchStrategy;
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import eu.etaxonomy.cdm.strategy.merge.IMergeStrategy;
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/**
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* @author pplitzner
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* @date 26.09.2013
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*
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*/
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public class TransientOccurenceService implements IOccurrenceService {
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private final IOccurrenceService defaultService;
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private final Collection<SpecimenOrObservationBase<?>> units;
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/**
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* @param defaultService
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*/
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public TransientOccurenceService(IOccurrenceService defaultService) {
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this.defaultService = defaultService;
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ab287c7e
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this.units = new HashSet<SpecimenOrObservationBase<?>>();
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544878ef
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}
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/**
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* @param t
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* @param pageSize
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* @param pageNumber
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* @param sort
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* @param propertyPaths
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* @return
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* @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
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*/
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@Override
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public Pager<AuditEventRecord<SpecimenOrObservationBase>> pageAuditEvents(SpecimenOrObservationBase t, Integer pageSize, Integer pageNumber, AuditEventSort sort, List<String> propertyPaths) {
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return defaultService.pageAuditEvents(t, pageSize, pageNumber, sort, propertyPaths);
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}
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/**
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* @param annotatedObj
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* @param status
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* @param pageSize
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* @param pageNumber
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* @param orderHints
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* @param propertyPaths
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* @return
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* @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
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*/
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@Override
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public Pager<Annotation> getAnnotations(SpecimenOrObservationBase annotatedObj, MarkerType status, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
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return defaultService.getAnnotations(annotatedObj, status, pageSize, pageNumber, orderHints, propertyPaths);
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}
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/**
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*
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* @see eu.etaxonomy.cdm.api.service.IService#clear()
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*/
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@Override
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public void clear() {
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defaultService.clear();
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}
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/**
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* @param t
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* @param lockMode
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* @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
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*/
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@Override
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7759e4de
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Andreas Müller
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public void lock(SpecimenOrObservationBase t, LockOptions lockOptions) {
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defaultService.lock(t, lockOptions);
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544878ef
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Patric Plitzner
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}
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/**
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* @param t
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* @param lockMode
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* @param propertyPaths
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* @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
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*/
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@Override
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7759e4de
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Andreas Müller
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public void refresh(SpecimenOrObservationBase t, LockOptions lockOptions, List<String> propertyPaths) {
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defaultService.refresh(t, lockOptions, propertyPaths);
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544878ef
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}
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/**
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*
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* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
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*/
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@Override
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public void updateTitleCache() {
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defaultService.updateTitleCache();
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}
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/**
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* @param t
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* @return
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* @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
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*/
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@Override
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public AuditEventRecord<SpecimenOrObservationBase> getNextAuditEvent(SpecimenOrObservationBase t) {
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return defaultService.getNextAuditEvent(t);
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}
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/**
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* @param annotatableEntity
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* @param technical
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* @param pageSize
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* @param pageNumber
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* @param orderHints
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* @param propertyPaths
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* @return
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* @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
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*/
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@Override
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public Pager<Marker> getMarkers(SpecimenOrObservationBase annotatableEntity, Boolean technical, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
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return defaultService.getMarkers(annotatableEntity, technical, pageSize, pageNumber, orderHints, propertyPaths);
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}
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/**
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* @param clazz
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* @param stepSize
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* @param cacheStrategy
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* @param monitor
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* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
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*/
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@Override
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public void updateTitleCache(Class<? extends SpecimenOrObservationBase> clazz, Integer stepSize, IIdentifiableEntityCacheStrategy<SpecimenOrObservationBase> cacheStrategy, IProgressMonitor monitor) {
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defaultService.updateTitleCache(clazz, stepSize, cacheStrategy, monitor);
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}
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/**
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* @param t
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* @return
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* @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
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*/
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@Override
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public AuditEventRecord<SpecimenOrObservationBase> getPreviousAuditEvent(SpecimenOrObservationBase t) {
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return defaultService.getPreviousAuditEvent(t);
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}
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/**
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* @param iso639
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* @return
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* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCountryByIso(java.lang.String)
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*/
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@Override
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public Country getCountryByIso(String iso639) {
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return defaultService.getCountryByIso(iso639);
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}
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/**
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* @param clazz
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* @return
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* @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
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*/
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@Override
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public int count(Class<? extends SpecimenOrObservationBase> clazz) {
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return defaultService.count(clazz);
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}
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/**
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* @param name
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* @return
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* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCountryByName(java.lang.String)
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*/
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@Override
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public List<Country> getCountryByName(String name) {
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return defaultService.getCountryByName(name);
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}
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/**
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* @param type
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* @param determinedAs
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* @param limit
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* @param start
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* @param orderHints
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* @param propertyPaths
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* @return
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* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#list(java.lang.Class, eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
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*/
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@Override
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public Pager<SpecimenOrObservationBase> list(Class<? extends SpecimenOrObservationBase> type, TaxonBase determinedAs, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
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return defaultService.list(type, determinedAs, limit, start, orderHints, propertyPaths);
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}
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/**
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* @param clazz
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* @param from
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* @param to
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* @param criteria
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* @param pageSize
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* @param pageValue
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* @param sort
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* @param propertyPaths
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* @return
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* @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
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*/
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@Override
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public Pager<AuditEventRecord<SpecimenOrObservationBase>> pageAuditEvents(Class<? extends SpecimenOrObservationBase> clazz, AuditEvent from, AuditEvent to, List<AuditCriterion> criteria, Integer pageSize, Integer pageValue, AuditEventSort sort, List<String> propertyPaths) {
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return defaultService.pageAuditEvents(clazz, from, to, criteria, pageSize, pageValue, sort, propertyPaths);
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}
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/**
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* @param lsid
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* @return
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* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
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*/
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@Override
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public SpecimenOrObservationBase find(LSID lsid) {
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return defaultService.find(lsid);
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}
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/**
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* @param persistentObject
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* @return
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* @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
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*/
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@Override
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bcdc7df3
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Katja Luther
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public DeleteResult delete(SpecimenOrObservationBase persistentObject) {
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544878ef
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Patric Plitzner
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return defaultService.delete(persistentObject);
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}
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/**
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* @param clazz
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* @param technical
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297 |
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|
* @param pageSize
|
298 |
|
|
* @param pageNumber
|
299 |
|
|
* @param propertyPaths
|
300 |
|
|
* @return
|
301 |
|
|
* @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
|
302 |
|
|
*/
|
303 |
|
|
@Override
|
304 |
|
|
public List<Object[]> groupMarkers(Class<? extends SpecimenOrObservationBase> clazz, Boolean technical, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
305 |
|
|
return defaultService.groupMarkers(clazz, technical, pageSize, pageNumber, propertyPaths);
|
306 |
|
|
}
|
307 |
|
|
|
308 |
|
|
/**
|
309 |
|
|
* @param uuid
|
310 |
|
|
* @return
|
311 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
|
312 |
|
|
*/
|
313 |
|
|
@Override
|
314 |
|
|
public boolean exists(UUID uuid) {
|
315 |
|
|
return defaultService.exists(uuid);
|
316 |
|
|
}
|
317 |
|
|
|
318 |
|
|
/**
|
319 |
|
|
* @param x
|
320 |
|
|
* @param y
|
321 |
|
|
* @return
|
322 |
|
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
|
323 |
|
|
*/
|
324 |
|
|
@Override
|
325 |
|
|
public SpecimenOrObservationBase replace(SpecimenOrObservationBase x, SpecimenOrObservationBase y) {
|
326 |
|
|
return defaultService.replace(x, y);
|
327 |
|
|
}
|
328 |
|
|
|
329 |
|
|
/**
|
330 |
|
|
* @param uuidSet
|
331 |
|
|
* @return
|
332 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
|
333 |
|
|
*/
|
334 |
|
|
@Override
|
335 |
|
|
public List<SpecimenOrObservationBase> find(Set<UUID> uuidSet) {
|
336 |
|
|
return defaultService.find(uuidSet);
|
337 |
|
|
}
|
338 |
|
|
|
339 |
|
|
/**
|
340 |
|
|
* @param t
|
341 |
|
|
* @param pageSize
|
342 |
|
|
* @param pageNumber
|
343 |
|
|
* @param propertyPaths
|
344 |
|
|
* @return
|
345 |
|
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
|
346 |
|
|
*/
|
347 |
|
|
@Override
|
348 |
|
|
public Pager<IdentifiableSource> getSources(SpecimenOrObservationBase t, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
349 |
|
|
return defaultService.getSources(t, pageSize, pageNumber, propertyPaths);
|
350 |
|
|
}
|
351 |
|
|
|
352 |
|
|
/**
|
353 |
|
|
* @param uuid
|
354 |
|
|
* @return
|
355 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
|
356 |
|
|
*/
|
357 |
|
|
@Override
|
358 |
|
|
public SpecimenOrObservationBase find(UUID uuid) {
|
359 |
|
|
return defaultService.find(uuid);
|
360 |
|
|
}
|
361 |
|
|
|
362 |
|
|
/**
|
363 |
|
|
* @param id
|
364 |
|
|
* @return
|
365 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#find(int)
|
366 |
|
|
*/
|
367 |
|
|
@Override
|
368 |
|
|
public SpecimenOrObservationBase find(int id) {
|
369 |
|
|
return defaultService.find(id);
|
370 |
|
|
}
|
371 |
|
|
|
372 |
|
|
/**
|
373 |
|
|
* @param t
|
374 |
|
|
* @param pageSize
|
375 |
|
|
* @param pageNumber
|
376 |
|
|
* @param propertyPaths
|
377 |
|
|
* @return
|
378 |
|
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
|
379 |
|
|
*/
|
380 |
|
|
@Override
|
381 |
|
|
public Pager<Rights> getRights(SpecimenOrObservationBase t, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
382 |
|
|
return defaultService.getRights(t, pageSize, pageNumber, propertyPaths);
|
383 |
|
|
}
|
384 |
|
|
|
385 |
|
|
/**
|
386 |
|
|
* @param clazz
|
387 |
|
|
* @param technical
|
388 |
|
|
* @return
|
389 |
|
|
* @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
|
390 |
|
|
*/
|
391 |
|
|
@Override
|
392 |
|
|
public int countMarkers(Class<? extends SpecimenOrObservationBase> clazz, Boolean technical) {
|
393 |
|
|
return defaultService.countMarkers(clazz, technical);
|
394 |
|
|
}
|
395 |
|
|
|
396 |
|
|
/**
|
397 |
|
|
* @param occurence
|
398 |
|
|
* @param pageSize
|
399 |
|
|
* @param pageNumber
|
400 |
|
|
* @param propertyPaths
|
401 |
|
|
* @return
|
402 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getMedia(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List)
|
403 |
|
|
*/
|
404 |
|
|
@Override
|
405 |
|
|
public Pager<Media> getMedia(SpecimenOrObservationBase occurence, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
406 |
|
|
return defaultService.getMedia(occurence, pageSize, pageNumber, propertyPaths);
|
407 |
|
|
}
|
408 |
|
|
|
409 |
|
|
/**
|
410 |
|
|
* @param idSet
|
411 |
|
|
* @return
|
412 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
|
413 |
|
|
*/
|
414 |
|
|
@Override
|
415 |
|
|
public List<SpecimenOrObservationBase> findById(Set<Integer> idSet) {
|
416 |
|
|
return defaultService.findById(idSet);
|
417 |
|
|
}
|
418 |
|
|
|
419 |
|
|
/**
|
420 |
|
|
* @param clazz
|
421 |
|
|
* @param idInSource
|
422 |
|
|
* @param idNamespace
|
423 |
|
|
* @return
|
424 |
|
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
|
425 |
|
|
*/
|
426 |
|
|
@Override
|
427 |
|
|
public ISourceable getSourcedObjectByIdInSource(Class clazz, String idInSource, String idNamespace) {
|
428 |
|
|
return defaultService.getSourcedObjectByIdInSource(clazz, idInSource, idNamespace);
|
429 |
|
|
}
|
430 |
|
|
|
431 |
|
|
/**
|
432 |
|
|
* @return
|
433 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#getSession()
|
434 |
|
|
*/
|
435 |
|
|
@Override
|
436 |
|
|
public Session getSession() {
|
437 |
|
|
return defaultService.getSession();
|
438 |
|
|
}
|
439 |
|
|
|
440 |
|
|
/**
|
441 |
|
|
* @return
|
442 |
|
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
|
443 |
|
|
*/
|
444 |
|
|
@Override
|
445 |
|
|
public List<UuidAndTitleCache<SpecimenOrObservationBase>> getUuidAndTitleCache() {
|
446 |
|
|
return defaultService.getUuidAndTitleCache();
|
447 |
|
|
}
|
448 |
|
|
|
449 |
|
|
/**
|
450 |
|
|
* @param clazz
|
451 |
|
|
* @param limit
|
452 |
|
|
* @param start
|
453 |
|
|
* @param groups
|
454 |
|
|
* @param propertyPaths
|
455 |
|
|
* @return
|
456 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
457 |
|
|
*/
|
458 |
|
|
@Override
|
459 |
|
|
public List<Object[]> group(Class<? extends SpecimenOrObservationBase> clazz, Integer limit, Integer start, List<Grouping> groups, List<String> propertyPaths) {
|
460 |
|
|
return defaultService.group(clazz, limit, start, groups, propertyPaths);
|
461 |
|
|
}
|
462 |
|
|
|
463 |
|
|
/**
|
464 |
|
|
* @param occurence
|
465 |
|
|
* @param taxonBase
|
466 |
|
|
* @param pageSize
|
467 |
|
|
* @param pageNumber
|
468 |
|
|
* @param propertyPaths
|
469 |
|
|
* @return
|
470 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDeterminations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
|
471 |
|
|
*/
|
472 |
|
|
@Override
|
473 |
|
|
public Pager<DeterminationEvent> getDeterminations(SpecimenOrObservationBase occurence, TaxonBase taxonBase, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
474 |
|
|
return defaultService.getDeterminations(occurence, taxonBase, pageSize, pageNumber, propertyPaths);
|
475 |
|
|
}
|
476 |
|
|
|
477 |
|
|
/**
|
478 |
|
|
* @param clazz
|
479 |
|
|
* @param queryString
|
480 |
|
|
* @param matchmode
|
481 |
|
|
* @param criteria
|
482 |
|
|
* @param pageSize
|
483 |
|
|
* @param pageNumber
|
484 |
|
|
* @param orderHints
|
485 |
|
|
* @param propertyPaths
|
486 |
|
|
* @return
|
487 |
|
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
488 |
|
|
*/
|
489 |
|
|
@Override
|
490 |
|
|
public Pager<SpecimenOrObservationBase> findByTitle(Class<? extends SpecimenOrObservationBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
491 |
|
|
return defaultService.findByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
|
492 |
|
|
}
|
493 |
|
|
|
494 |
|
|
/**
|
495 |
|
|
* @param occurence
|
496 |
|
|
* @param pageSize
|
497 |
|
|
* @param pageNumber
|
498 |
|
|
* @param propertyPaths
|
499 |
|
|
* @return
|
500 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivationEvents(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List)
|
501 |
|
|
*/
|
502 |
|
|
@Override
|
503 |
|
|
public Pager<DerivationEvent> getDerivationEvents(SpecimenOrObservationBase occurence, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
504 |
|
|
return defaultService.getDerivationEvents(occurence, pageSize, pageNumber, propertyPaths);
|
505 |
|
|
}
|
506 |
|
|
|
507 |
|
|
/**
|
508 |
|
|
* @param type
|
509 |
|
|
* @param limit
|
510 |
|
|
* @param start
|
511 |
|
|
* @param orderHints
|
512 |
|
|
* @param propertyPaths
|
513 |
|
|
* @return
|
514 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
515 |
|
|
*/
|
516 |
|
|
@Override
|
517 |
ee385ff9
|
Andreas Müller
|
public <S extends SpecimenOrObservationBase> List<S> list(Class<S> type, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
518 |
544878ef
|
Patric Plitzner
|
return defaultService.list(type, limit, start, orderHints, propertyPaths);
|
519 |
|
|
}
|
520 |
|
|
|
521 |
|
|
/**
|
522 |
|
|
* @param clazz
|
523 |
|
|
* @param query
|
524 |
|
|
* @param pageSize
|
525 |
|
|
* @param pageNumber
|
526 |
|
|
* @param orderHints
|
527 |
|
|
* @param propertyPaths
|
528 |
|
|
* @return
|
529 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
530 |
|
|
*/
|
531 |
|
|
@Override
|
532 |
|
|
public Pager<SpecimenOrObservationBase> search(Class<? extends SpecimenOrObservationBase> clazz, String query, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
533 |
|
|
return defaultService.search(clazz, query, pageSize, pageNumber, orderHints, propertyPaths);
|
534 |
|
|
}
|
535 |
|
|
|
536 |
|
|
/**
|
537 |
|
|
* @param configurator
|
538 |
|
|
* @return
|
539 |
|
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
|
540 |
|
|
*/
|
541 |
|
|
@Override
|
542 |
|
|
public Pager<SpecimenOrObservationBase> findByTitle(IIdentifiableEntityServiceConfigurator<SpecimenOrObservationBase> configurator) {
|
543 |
|
|
return defaultService.findByTitle(configurator);
|
544 |
|
|
}
|
545 |
|
|
|
546 |
|
|
/**
|
547 |
|
|
* @param clazz
|
548 |
|
|
* @param queryString
|
549 |
|
|
* @param matchmode
|
550 |
|
|
* @param criteria
|
551 |
|
|
* @return
|
552 |
|
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
|
553 |
|
|
*/
|
554 |
|
|
@Override
|
555 |
|
|
public Integer countByTitle(Class<? extends SpecimenOrObservationBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria) {
|
556 |
|
|
return defaultService.countByTitle(clazz, queryString, matchmode, criteria);
|
557 |
|
|
}
|
558 |
|
|
|
559 |
|
|
/**
|
560 |
|
|
* @param uuid
|
561 |
|
|
* @return
|
562 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
|
563 |
|
|
*/
|
564 |
|
|
@Override
|
565 |
|
|
public SpecimenOrObservationBase load(UUID uuid) {
|
566 |
|
|
return defaultService.load(uuid);
|
567 |
|
|
}
|
568 |
|
|
|
569 |
|
|
/**
|
570 |
|
|
* @param uuid
|
571 |
|
|
* @param propertyPaths
|
572 |
|
|
* @return
|
573 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
|
574 |
|
|
*/
|
575 |
|
|
@Override
|
576 |
|
|
public SpecimenOrObservationBase load(UUID uuid, List<String> propertyPaths) {
|
577 |
|
|
return defaultService.load(uuid, propertyPaths);
|
578 |
|
|
}
|
579 |
|
|
|
580 |
|
|
/**
|
581 |
|
|
* @param configurator
|
582 |
|
|
* @return
|
583 |
|
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
|
584 |
|
|
*/
|
585 |
|
|
@Override
|
586 |
|
|
public Integer countByTitle(IIdentifiableEntityServiceConfigurator<SpecimenOrObservationBase> configurator) {
|
587 |
|
|
return defaultService.countByTitle(configurator);
|
588 |
|
|
}
|
589 |
|
|
|
590 |
|
|
/**
|
591 |
|
|
* @return
|
592 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getFieldUnitUuidAndTitleCache()
|
593 |
|
|
*/
|
594 |
|
|
@Override
|
595 |
|
|
public List<UuidAndTitleCache<FieldUnit>> getFieldUnitUuidAndTitleCache() {
|
596 |
|
|
return defaultService.getFieldUnitUuidAndTitleCache();
|
597 |
|
|
}
|
598 |
|
|
|
599 |
|
|
/**
|
600 |
|
|
* @return
|
601 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivedUnitUuidAndTitleCache()
|
602 |
|
|
*/
|
603 |
|
|
@Override
|
604 |
|
|
public List<UuidAndTitleCache<DerivedUnit>> getDerivedUnitUuidAndTitleCache() {
|
605 |
|
|
return defaultService.getDerivedUnitUuidAndTitleCache();
|
606 |
|
|
}
|
607 |
|
|
|
608 |
|
|
/**
|
609 |
|
|
* @param transientObject
|
610 |
|
|
* @return
|
611 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
|
612 |
|
|
*/
|
613 |
|
|
@Override
|
614 |
|
|
public SpecimenOrObservationBase merge(SpecimenOrObservationBase transientObject) {
|
615 |
|
|
return defaultService.merge(transientObject);
|
616 |
|
|
}
|
617 |
|
|
|
618 |
|
|
/**
|
619 |
|
|
* @param derivedUnit
|
620 |
|
|
* @param propertyPaths
|
621 |
|
|
* @return
|
622 |
|
|
* @throws DerivedUnitFacadeNotSupportedException
|
623 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivedUnitFacade(eu.etaxonomy.cdm.model.occurrence.DerivedUnit, java.util.List)
|
624 |
|
|
*/
|
625 |
|
|
@Override
|
626 |
|
|
public DerivedUnitFacade getDerivedUnitFacade(DerivedUnit derivedUnit, List<String> propertyPaths) throws DerivedUnitFacadeNotSupportedException {
|
627 |
|
|
return defaultService.getDerivedUnitFacade(derivedUnit, propertyPaths);
|
628 |
|
|
}
|
629 |
|
|
|
630 |
|
|
/**
|
631 |
|
|
* @param clazz
|
632 |
|
|
* @param queryString
|
633 |
|
|
* @param matchmode
|
634 |
|
|
* @param criteria
|
635 |
|
|
* @param pageSize
|
636 |
|
|
* @param pageNumber
|
637 |
|
|
* @param orderHints
|
638 |
|
|
* @param propertyPaths
|
639 |
|
|
* @return
|
640 |
|
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
641 |
|
|
*/
|
642 |
|
|
@Override
|
643 |
|
|
public List<SpecimenOrObservationBase> listByTitle(Class<? extends SpecimenOrObservationBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
644 |
|
|
return defaultService.listByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
|
645 |
|
|
}
|
646 |
|
|
|
647 |
|
|
/**
|
648 |
|
|
* @param description
|
649 |
|
|
* @param propertyPaths
|
650 |
|
|
* @return
|
651 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listDerivedUnitFacades(eu.etaxonomy.cdm.model.description.DescriptionBase, java.util.List)
|
652 |
|
|
*/
|
653 |
|
|
@Override
|
654 |
|
|
public List<DerivedUnitFacade> listDerivedUnitFacades(DescriptionBase description, List<String> propertyPaths) {
|
655 |
|
|
return defaultService.listDerivedUnitFacades(description, propertyPaths);
|
656 |
|
|
}
|
657 |
|
|
|
658 |
|
|
/**
|
659 |
|
|
* @param type
|
660 |
|
|
* @param pageSize
|
661 |
|
|
* @param pageNumber
|
662 |
|
|
* @param orderHints
|
663 |
|
|
* @param propertyPaths
|
664 |
|
|
* @return
|
665 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
666 |
|
|
*/
|
667 |
|
|
@Override
|
668 |
ee385ff9
|
Andreas Müller
|
public <S extends SpecimenOrObservationBase> Pager<S> page(Class<S> type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
669 |
544878ef
|
Patric Plitzner
|
return defaultService.page(type, pageSize, pageNumber, orderHints, propertyPaths);
|
670 |
|
|
}
|
671 |
|
|
|
672 |
|
|
/**
|
673 |
|
|
* @param type
|
674 |
|
|
* @param includeRelationships
|
675 |
|
|
* @param associatedTaxon
|
676 |
|
|
* @param maxDepth
|
677 |
|
|
* @param pageSize
|
678 |
|
|
* @param pageNumber
|
679 |
|
|
* @param orderHints
|
680 |
|
|
* @param propertyPaths
|
681 |
|
|
* @return
|
682 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listByAssociatedTaxon(java.lang.Class, java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
683 |
|
|
*/
|
684 |
|
|
@Override
|
685 |
|
|
public <T extends SpecimenOrObservationBase> List<T> listByAssociatedTaxon(Class<T> type, Set<TaxonRelationshipEdge> includeRelationships, Taxon associatedTaxon, Integer maxDepth, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
686 |
|
|
return defaultService.listByAssociatedTaxon(type, includeRelationships, associatedTaxon, maxDepth, pageSize, pageNumber, orderHints, propertyPaths);
|
687 |
|
|
}
|
688 |
|
|
|
689 |
|
|
/**
|
690 |
|
|
* @param persistentObject
|
691 |
|
|
* @return
|
692 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
|
693 |
|
|
*/
|
694 |
|
|
@Override
|
695 |
|
|
public UUID refresh(SpecimenOrObservationBase persistentObject) {
|
696 |
|
|
return defaultService.refresh(persistentObject);
|
697 |
|
|
}
|
698 |
|
|
|
699 |
|
|
/**
|
700 |
|
|
* @param clazz
|
701 |
|
|
* @param queryString
|
702 |
|
|
* @param matchmode
|
703 |
|
|
* @param criteria
|
704 |
|
|
* @param pageSize
|
705 |
|
|
* @param pageNumber
|
706 |
|
|
* @param orderHints
|
707 |
|
|
* @param propertyPaths
|
708 |
|
|
* @return
|
709 |
|
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
710 |
|
|
*/
|
711 |
|
|
@Override
|
712 |
|
|
public List<SpecimenOrObservationBase> listByReferenceTitle(Class<? extends SpecimenOrObservationBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
713 |
|
|
return defaultService.listByReferenceTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
|
714 |
|
|
}
|
715 |
|
|
|
716 |
|
|
/**
|
717 |
|
|
* @param tableName
|
718 |
|
|
* @param limit
|
719 |
|
|
* @param start
|
720 |
|
|
* @return
|
721 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
|
722 |
|
|
*/
|
723 |
|
|
@Override
|
724 |
|
|
public List<SpecimenOrObservationBase> rows(String tableName, int limit, int start) {
|
725 |
|
|
return defaultService.rows(tableName, limit, start);
|
726 |
|
|
}
|
727 |
|
|
|
728 |
|
|
/**
|
729 |
|
|
* @param newInstances
|
730 |
|
|
* @return
|
731 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
|
732 |
|
|
*/
|
733 |
|
|
@Override
|
734 |
|
|
public Map<UUID, SpecimenOrObservationBase> save(Collection<SpecimenOrObservationBase> newInstances) {
|
735 |
a14ee477
|
Patric Plitzner
|
for(SpecimenOrObservationBase unit:newInstances){
|
736 |
|
|
save(unit);
|
737 |
|
|
}
|
738 |
|
|
return null;
|
739 |
544878ef
|
Patric Plitzner
|
}
|
740 |
|
|
|
741 |
|
|
/**
|
742 |
|
|
* @param type
|
743 |
|
|
* @param includeRelationships
|
744 |
|
|
* @param associatedTaxon
|
745 |
|
|
* @param maxDepth
|
746 |
|
|
* @param pageSize
|
747 |
|
|
* @param pageNumber
|
748 |
|
|
* @param orderHints
|
749 |
|
|
* @param propertyPaths
|
750 |
|
|
* @return
|
751 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#pageByAssociatedTaxon(java.lang.Class, java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
752 |
|
|
*/
|
753 |
|
|
@Override
|
754 |
|
|
public <T extends SpecimenOrObservationBase> Pager<T> pageByAssociatedTaxon(Class<T> type, Set<TaxonRelationshipEdge> includeRelationships, Taxon associatedTaxon, Integer maxDepth, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
755 |
|
|
return defaultService.pageByAssociatedTaxon(type, includeRelationships, associatedTaxon, maxDepth, pageSize, pageNumber, orderHints, propertyPaths);
|
756 |
|
|
}
|
757 |
|
|
|
758 |
|
|
/**
|
759 |
|
|
* @param newInstance
|
760 |
|
|
* @return
|
761 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
|
762 |
|
|
*/
|
763 |
|
|
@Override
|
764 |
|
|
public UUID save(SpecimenOrObservationBase newInstance) {
|
765 |
|
|
units.add(newInstance);
|
766 |
|
|
return null;
|
767 |
|
|
}
|
768 |
|
|
|
769 |
|
|
/**
|
770 |
|
|
* @param transientObject
|
771 |
|
|
* @return
|
772 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
|
773 |
|
|
*/
|
774 |
|
|
@Override
|
775 |
|
|
public UUID saveOrUpdate(SpecimenOrObservationBase transientObject) {
|
776 |
|
|
units.add(transientObject);
|
777 |
|
|
return null;
|
778 |
|
|
}
|
779 |
|
|
|
780 |
|
|
/**
|
781 |
|
|
* @param transientObjects
|
782 |
|
|
* @return
|
783 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
|
784 |
|
|
*/
|
785 |
|
|
@Override
|
786 |
|
|
public Map<UUID, SpecimenOrObservationBase> saveOrUpdate(Collection<SpecimenOrObservationBase> transientObjects) {
|
787 |
a14ee477
|
Patric Plitzner
|
for(SpecimenOrObservationBase unit:transientObjects){
|
788 |
|
|
saveOrUpdate(unit);
|
789 |
|
|
}
|
790 |
|
|
return null;
|
791 |
544878ef
|
Patric Plitzner
|
}
|
792 |
|
|
|
793 |
|
|
/**
|
794 |
|
|
* @param clazz
|
795 |
|
|
* @param queryString
|
796 |
|
|
* @param boundingBox
|
797 |
|
|
* @param languages
|
798 |
|
|
* @param highlightFragments
|
799 |
|
|
* @param pageSize
|
800 |
|
|
* @param pageNumber
|
801 |
|
|
* @param orderHints
|
802 |
|
|
* @param propertyPaths
|
803 |
|
|
* @return
|
804 |
|
|
* @throws CorruptIndexException
|
805 |
|
|
* @throws IOException
|
806 |
|
|
* @throws ParseException
|
807 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#findByFullText(java.lang.Class, java.lang.String, org.hibernate.search.spatial.impl.Rectangle, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
808 |
|
|
*/
|
809 |
|
|
@Override
|
810 |
|
|
public Pager<SearchResult<SpecimenOrObservationBase>> findByFullText(Class<? extends SpecimenOrObservationBase> clazz, String queryString, Rectangle boundingBox, List<Language> languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) throws CorruptIndexException, IOException, ParseException {
|
811 |
|
|
return defaultService.findByFullText(clazz, queryString, boundingBox, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths);
|
812 |
|
|
}
|
813 |
|
|
|
814 |
|
|
/**
|
815 |
|
|
* @param transientObject
|
816 |
|
|
* @return
|
817 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
|
818 |
|
|
*/
|
819 |
|
|
@Override
|
820 |
|
|
public UUID update(SpecimenOrObservationBase transientObject) {
|
821 |
|
|
return defaultService.update(transientObject);
|
822 |
|
|
}
|
823 |
|
|
|
824 |
|
|
/**
|
825 |
|
|
* @param example
|
826 |
|
|
* @param includeProperties
|
827 |
|
|
* @param limit
|
828 |
|
|
* @param start
|
829 |
|
|
* @param orderHints
|
830 |
|
|
* @param propertyPaths
|
831 |
|
|
* @return
|
832 |
|
|
* @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
833 |
|
|
*/
|
834 |
|
|
@Override
|
835 |
|
|
public List<SpecimenOrObservationBase> list(SpecimenOrObservationBase example, Set<String> includeProperties, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
836 |
|
|
return defaultService.list(example, includeProperties, limit, start, orderHints, propertyPaths);
|
837 |
|
|
}
|
838 |
|
|
|
839 |
|
|
/**
|
840 |
|
|
* @param clazz
|
841 |
|
|
* @param matchStrategy
|
842 |
|
|
* @param mergeStrategy
|
843 |
|
|
* @return
|
844 |
|
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
|
845 |
|
|
*/
|
846 |
|
|
@Override
|
847 |
|
|
public int deduplicate(Class<? extends SpecimenOrObservationBase> clazz, IMatchStrategy matchStrategy, IMergeStrategy mergeStrategy) {
|
848 |
|
|
return defaultService.deduplicate(clazz, matchStrategy, mergeStrategy);
|
849 |
|
|
}
|
850 |
|
|
|
851 |
|
|
/**
|
852 |
|
|
* @param clazz
|
853 |
|
|
* @param queryString
|
854 |
|
|
* @param pageSize
|
855 |
|
|
* @param pageNumber
|
856 |
|
|
* @param orderHints
|
857 |
|
|
* @param matchMode
|
858 |
|
|
* @return
|
859 |
|
|
* @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
|
860 |
|
|
*/
|
861 |
|
|
@Override
|
862 |
|
|
public Pager<SpecimenOrObservationBase> findTitleCache(Class<? extends SpecimenOrObservationBase> clazz, String queryString, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, MatchMode matchMode) {
|
863 |
|
|
return defaultService.findTitleCache(clazz, queryString, pageSize, pageNumber, orderHints, matchMode);
|
864 |
|
|
}
|
865 |
|
|
|
866 |
|
|
/**
|
867 |
|
|
* @return
|
868 |
|
|
*/
|
869 |
ab287c7e
|
Patric Plitzner
|
public Collection<SpecimenOrObservationBase<?>> getUnits() {
|
870 |
544878ef
|
Patric Plitzner
|
return units;
|
871 |
|
|
}
|
872 |
|
|
|
873 |
d00b84de
|
Patric Plitzner
|
/* (non-Javadoc)
|
874 |
a35762a8
|
Patric Plitzner
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getFieldUnits(java.util.UUID)
|
875 |
d00b84de
|
Patric Plitzner
|
*/
|
876 |
|
|
@Override
|
877 |
a35762a8
|
Patric Plitzner
|
public Collection<FieldUnit> getFieldUnits(UUID derivedUnitUuid) {
|
878 |
|
|
return defaultService.getFieldUnits(derivedUnitUuid);
|
879 |
d00b84de
|
Patric Plitzner
|
}
|
880 |
|
|
|
881 |
63ce1315
|
Andreas Kohlbecker
|
/* (non-Javadoc)
|
882 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#pageByAssociatedTaxon(java.lang.Class, java.util.Set, java.lang.String, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
883 |
|
|
*/
|
884 |
|
|
@Override
|
885 |
|
|
public <T extends SpecimenOrObservationBase> Pager<T> pageByAssociatedTaxon(Class<T> type,
|
886 |
|
|
Set<TaxonRelationshipEdge> includeRelationships, String taxonUUID, Integer maxDepth, Integer pageSize,
|
887 |
|
|
Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
888 |
|
|
return defaultService.pageByAssociatedTaxon(type, includeRelationships, taxonUUID,
|
889 |
|
|
maxDepth, pageSize, pageNumber, orderHints, propertyPaths);
|
890 |
|
|
}
|
891 |
|
|
|
892 |
5303e44d
|
Patric Plitzner
|
/* (non-Javadoc)
|
893 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#moveDerivate(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.occurrence.DerivedUnit)
|
894 |
|
|
*/
|
895 |
|
|
@Override
|
896 |
|
|
public boolean moveDerivate(SpecimenOrObservationBase<?> from, SpecimenOrObservationBase<?> to, DerivedUnit derivate) {
|
897 |
|
|
return defaultService.moveDerivate(from, to, derivate);
|
898 |
|
|
}
|
899 |
|
|
|
900 |
|
|
/* (non-Javadoc)
|
901 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#moveSequence(eu.etaxonomy.cdm.model.molecular.DnaSample, eu.etaxonomy.cdm.model.molecular.DnaSample, eu.etaxonomy.cdm.model.molecular.Sequence)
|
902 |
|
|
*/
|
903 |
|
|
@Override
|
904 |
|
|
public boolean moveSequence(DnaSample from, DnaSample to, Sequence sequence) {
|
905 |
|
|
return defaultService.moveSequence(from, to, sequence);
|
906 |
|
|
}
|
907 |
|
|
|
908 |
3f8e87ed
|
Katja Luther
|
@Override
|
909 |
a53be09c
|
Katja Luther
|
public DeleteResult isDeletable(SpecimenOrObservationBase object,
|
910 |
3f8e87ed
|
Katja Luther
|
DeleteConfiguratorBase config) {
|
911 |
e331654f
|
Patric Plitzner
|
return defaultService.isDeletable(object, config);
|
912 |
3f8e87ed
|
Katja Luther
|
}
|
913 |
|
|
|
914 |
a3391409
|
Patric Plitzner
|
/* (non-Javadoc)
|
915 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#countDeterminations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.taxon.TaxonBase)
|
916 |
|
|
*/
|
917 |
|
|
@Override
|
918 |
|
|
public int countDeterminations(SpecimenOrObservationBase occurence, TaxonBase taxonbase) {
|
919 |
|
|
return defaultService.countDeterminations(occurence, taxonbase);
|
920 |
|
|
}
|
921 |
|
|
|
922 |
ad1fb316
|
Cherian Mathew
|
@Override
|
923 |
|
|
public SpecimenOrObservationBase findWithoutFlush(UUID uuid) {
|
924 |
|
|
return defaultService.findWithoutFlush(uuid);
|
925 |
|
|
}
|
926 |
|
|
|
927 |
8c64fe31
|
Patric Plitzner
|
@Override
|
928 |
|
|
public Collection<SpecimenOrObservationBase> listFieldUnitsByAssociatedTaxon(Taxon associatedTaxon,
|
929 |
|
|
List<OrderHint> orderHints, List<String> propertyPaths) {
|
930 |
|
|
return defaultService.listFieldUnitsByAssociatedTaxon(associatedTaxon, orderHints, propertyPaths);
|
931 |
|
|
}
|
932 |
|
|
|
933 |
|
|
@Override
|
934 |
|
|
public Pager<SpecimenOrObservationBase> pageFieldUnitsByAssociatedTaxon(
|
935 |
|
|
Set<TaxonRelationshipEdge> includeRelationships, Taxon associatedTaxon, Integer maxDepth, Integer pageSize,
|
936 |
|
|
Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
937 |
|
|
return defaultService.pageFieldUnitsByAssociatedTaxon(includeRelationships, associatedTaxon, maxDepth, pageSize, pageNumber, orderHints, propertyPaths);
|
938 |
|
|
}
|
939 |
|
|
|
940 |
6b71d584
|
Patric Plitzner
|
|
941 |
44b88189
|
Patric Plitzner
|
/* (non-Javadoc)
|
942 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#assembleFieldUnitDTO(eu.etaxonomy.cdm.model.occurrence.FieldUnit, java.util.UUID)
|
943 |
|
|
*/
|
944 |
|
|
@Override
|
945 |
|
|
public FieldUnitDTO assembleFieldUnitDTO(FieldUnit fieldUnit, UUID associatedTaxonUuid) {
|
946 |
|
|
return defaultService.assembleFieldUnitDTO(fieldUnit, associatedTaxonUuid);
|
947 |
|
|
}
|
948 |
|
|
|
949 |
|
|
/* (non-Javadoc)
|
950 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#assemblePreservedSpecimenDTO(eu.etaxonomy.cdm.model.occurrence.DerivedUnit)
|
951 |
|
|
*/
|
952 |
|
|
@Override
|
953 |
|
|
public PreservedSpecimenDTO assemblePreservedSpecimenDTO(DerivedUnit derivedUnit) {
|
954 |
|
|
return defaultService.assemblePreservedSpecimenDTO(derivedUnit);
|
955 |
|
|
}
|
956 |
6b71d584
|
Patric Plitzner
|
|
957 |
01d8bfed
|
Patric Plitzner
|
@Override
|
958 |
00a62062
|
Patric Plitzner
|
public Collection<ICdmBase> getNonCascadedAssociatedElements(SpecimenOrObservationBase<?> specimen) {
|
959 |
|
|
return defaultService.getNonCascadedAssociatedElements(specimen);
|
960 |
01d8bfed
|
Patric Plitzner
|
}
|
961 |
|
|
|
962 |
463e5920
|
Patric Plitzner
|
/* (non-Javadoc)
|
963 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#deleteDerivateHierarchy(eu.etaxonomy.cdm.model.common.ICdmBase)
|
964 |
|
|
*/
|
965 |
|
|
@Override
|
966 |
d3cd098b
|
Patric Plitzner
|
public DeleteResult deleteDerivateHierarchy(CdmBase from, SpecimenDeleteConfigurator config) {
|
967 |
d0ba58fc
|
Patric Plitzner
|
return defaultService.deleteDerivateHierarchy(from, config);
|
968 |
|
|
}
|
969 |
|
|
|
970 |
|
|
/* (non-Javadoc)
|
971 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#delete(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.api.service.config.SpecimenDeleteConfigurator)
|
972 |
|
|
*/
|
973 |
|
|
@Override
|
974 |
|
|
public DeleteResult delete(SpecimenOrObservationBase<?> specimen, SpecimenDeleteConfigurator config) {
|
975 |
|
|
return defaultService.delete(specimen, config);
|
976 |
463e5920
|
Patric Plitzner
|
}
|
977 |
|
|
|
978 |
b0ab81b7
|
Patric Plitzner
|
/* (non-Javadoc)
|
979 |
abc0d35a
|
Patric Plitzner
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listIndividualsAssociations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
980 |
b0ab81b7
|
Patric Plitzner
|
*/
|
981 |
|
|
@Override
|
982 |
abc0d35a
|
Patric Plitzner
|
public Collection<IndividualsAssociation> listIndividualsAssociations(SpecimenOrObservationBase<?> specimen,
|
983 |
|
|
Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
984 |
|
|
return defaultService.listIndividualsAssociations(specimen, limit, start, orderHints, propertyPaths);
|
985 |
b0ab81b7
|
Patric Plitzner
|
}
|
986 |
|
|
|
987 |
46be9511
|
Patric Plitzner
|
/* (non-Javadoc)
|
988 |
abc0d35a
|
Patric Plitzner
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listTypeDesignations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
989 |
46be9511
|
Patric Plitzner
|
*/
|
990 |
|
|
@Override
|
991 |
abc0d35a
|
Patric Plitzner
|
public Collection<SpecimenTypeDesignation> listTypeDesignations(SpecimenOrObservationBase<?> specimen,
|
992 |
|
|
Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
993 |
|
|
return defaultService.listTypeDesignations(specimen, limit, start, orderHints, propertyPaths);
|
994 |
46be9511
|
Patric Plitzner
|
}
|
995 |
|
|
|
996 |
69c08a27
|
Patric Plitzner
|
/* (non-Javadoc)
|
997 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listDescriptionsWithDescriptionSpecimen(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
|
998 |
|
|
*/
|
999 |
|
|
@Override
|
1000 |
|
|
public Collection<DescriptionBase<?>> listDescriptionsWithDescriptionSpecimen(
|
1001 |
|
|
SpecimenOrObservationBase<?> specimen, Integer limit, Integer start, List<OrderHint> orderHints,
|
1002 |
|
|
List<String> propertyPaths) {
|
1003 |
|
|
return defaultService.listDescriptionsWithDescriptionSpecimen(specimen, limit, start, orderHints, propertyPaths);
|
1004 |
|
|
}
|
1005 |
62ad723f
|
Andreas Müller
|
|
1006 |
7c1862cd
|
Andreas Müller
|
@Override
|
1007 |
62ad723f
|
Andreas Müller
|
public <S extends SpecimenOrObservationBase> Pager<FindByIdentifierDTO<S>> findByIdentifier(Class<S> clazz, String identifier, DefinedTerm identifierType, MatchMode matchmode, boolean includeEntity, Integer pageSize, Integer pageNumber, List<String> propertyPaths){
|
1008 |
|
|
return defaultService.findByIdentifier(clazz, identifier, identifierType, matchmode, includeEntity, pageSize, pageNumber, propertyPaths);
|
1009 |
7c1862cd
|
Andreas Müller
|
}
|
1010 |
69c08a27
|
Patric Plitzner
|
|
1011 |
44b88189
|
Patric Plitzner
|
/* (non-Javadoc)
|
1012 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCharacterDataForSpecimen(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase)
|
1013 |
|
|
*/
|
1014 |
|
|
@Override
|
1015 |
|
|
public Collection<DescriptionElementBase> getCharacterDataForSpecimen(SpecimenOrObservationBase<?> arg0) {
|
1016 |
|
|
return defaultService.getCharacterDataForSpecimen(arg0);
|
1017 |
|
|
}
|
1018 |
|
|
|
1019 |
|
|
/* (non-Javadoc)
|
1020 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCharacterDataForSpecimen(java.util.UUID)
|
1021 |
|
|
*/
|
1022 |
|
|
@Override
|
1023 |
|
|
public Collection<DescriptionElementBase> getCharacterDataForSpecimen(UUID arg0) {
|
1024 |
|
|
return getCharacterDataForSpecimen(arg0);
|
1025 |
|
|
}
|
1026 |
|
|
|
1027 |
5b0aaa3c
|
Patric Plitzner
|
/* (non-Javadoc)
|
1028 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getMostSignificantIdentifier(eu.etaxonomy.cdm.model.occurrence.DerivedUnit)
|
1029 |
|
|
*/
|
1030 |
|
|
@Override
|
1031 |
|
|
public String getMostSignificantIdentifier(DerivedUnit derivedUnit) {
|
1032 |
|
|
return defaultService.getMostSignificantIdentifier(derivedUnit);
|
1033 |
|
|
}
|
1034 |
|
|
|
1035 |
87cd03a1
|
Patric Plitzner
|
/* (non-Javadoc)
|
1036 |
|
|
* @see eu.etaxonomy.cdm.api.service.IOccurrenceService#countOccurrences(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
|
1037 |
|
|
*/
|
1038 |
|
|
@Override
|
1039 |
|
|
public int countOccurrences(IIdentifiableEntityServiceConfigurator<SpecimenOrObservationBase> config) {
|
1040 |
|
|
return defaultService.countOccurrences(config);
|
1041 |
|
|
}
|
1042 |
|
|
|
1043 |
2cc2ab44
|
Patric Plitzner
|
/**
|
1044 |
|
|
* {@inheritDoc}
|
1045 |
|
|
*/
|
1046 |
|
|
@Override
|
1047 |
|
|
public List<DerivedUnit> getAllChildDerivatives(SpecimenOrObservationBase<?> specimen) {
|
1048 |
|
|
return defaultService.getAllChildDerivatives(specimen);
|
1049 |
|
|
}
|
1050 |
|
|
|
1051 |
|
|
/**
|
1052 |
|
|
* {@inheritDoc}
|
1053 |
|
|
*/
|
1054 |
|
|
@Override
|
1055 |
|
|
public List<SpecimenOrObservationBase<?>> getAllHierarchyDerivatives(SpecimenOrObservationBase<?> specimen) {
|
1056 |
|
|
return defaultService.getAllHierarchyDerivatives(specimen);
|
1057 |
|
|
}
|
1058 |
|
|
|
1059 |
544878ef
|
Patric Plitzner
|
}
|